Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17182 LG4 32780943 32782205 PREDICTED: transcription factor MYB36-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 32781065 synonymous_variant p.Leu41Leu
C/A 32781066 missense_variant p.Pro42Thr
C/A 32781068 synonymous_variant p.Pro42Pro
T/A 32781096 downstream_gene_variant
T/C 32781141 downstream_gene_variant
A/T 32781172 downstream_gene_variant
G/C 32781185 downstream_gene_variant
C/T 32781198 downstream_gene_variant
C/G 32781226 downstream_gene_variant
T/G 32781230 downstream_gene_variant
A/G 32781233 downstream_gene_variant
A/G 32781241 downstream_gene_variant
C/A 32781243 downstream_gene_variant
G/A 32781244 downstream_gene_variant
T/C 32781247 downstream_gene_variant
T/C 32781258 downstream_gene_variant
C/T,* 32781264 downstream_gene_variant
A/G 32781271 downstream_gene_variant
G/C 32781287 downstream_gene_variant
T/G,* 32781320 downstream_gene_variant
C/A 32781325 downstream_gene_variant
T/G 32781331 downstream_gene_variant
A/G 32781358 downstream_gene_variant
C/T 32781368 downstream_gene_variant
A/T 32781372 downstream_gene_variant
T/G 32781378 downstream_gene_variant
A/G 32781392 downstream_gene_variant
G/T 32781411 downstream_gene_variant
A/G 32781527 missense_variant p.Asn77Ser
G/A 32781621 downstream_gene_variant
G/T 32781677 missense_variant p.Cys96Phe
T/C 32781695 missense_variant p.Met102Thr
G/C 32781742 missense_variant p.Glu118Gln
G/T 32781775 missense_variant p.Ala129Ser
G/C 32781858 missense_variant p.Leu156Phe
G/A 32781965 missense_variant p.Arg192His
A/G 32781990 synonymous_variant p.Leu200Leu
A/C 32782067 missense_variant p.Asn226Thr
T/C 32782070 missense_variant p.Met227Thr
C/G 32782119 missense_variant p.Cys243Trp
A/C 32782171 missense_variant p.Ile261Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17182.1
MGRAPCCDKSIVKKGPWSPDEDVTLRNYLEKHGTAGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYGNIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLGGNTGSSTVATSYNNGTVSGATSSDQFSSSTIQPQVDAFVLNQKLNSAWFDSYNNLNLEQTPISVPLPMPQELVSFNYSAPPSNEISLPTFNAASLAQQNEDIQWFGYEYAEENDPNLLAFVLDDLLMNHGSASSDHIASSCVDNQDSFYSSKA*


CDS Sequence:
>Vu_17182.1
ATGGGAAGGGCTCCTTGCTGTGACAAATCTATCGTGAAAAAAGGGCCATGGTCTCCTGATGAAGATGTCACCCTCAGAAACTACCTTGAGAAACATGGCACTGCTGGAAATTGGATAGCTCTCCCCAAGAAAGCAGGGCTTAAACGTTGTGGAAAGAGCTGTCGTCTGAGATGGCTGAACTATCTCAGGCCTCATATAAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATTATCTGCACCCTTTATGGCAATATTGGAAGCAGGTGGTCCCTCATAGCAGCTCAACTGCCCGGAAGAACAGACAATGATGTCAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTTCTAGGAGGAAACACTGGTAGTAGTACTGTTGCCACAAGCTACAACAATGGCACTGTCAGCGGTGCTACTTCTTCTGACCAATTCTCATCTTCTACTATTCAACCTCAAGTTGATGCCTTTGTCTTGAATCAGAAACTGAACTCAGCTTGGTTTGACTCCTACAATAATCTGAATCTGGAACAAACACCAATTTCAGTTCCTCTTCCAATGCCTCAGGAATTAGTATCGTTTAATTATAGTGCACCACCCTCTAATGAAATTTCATTGCCAACTTTCAATGCAGCTTCATTAGCACAGCAGAATGAAGATATACAATGGTTTGGCTATGAATATGCAGAGGAAAATGATCCAAATTTACTTGCTTTTGTGCTTGATGATCTGCTGATGAATCATGGGTCAGCATCTTCTGATCACATTGCTTCGTCATGTGTGGATAACCAAGACTCGTTCTACTCATCAAAAGCTTGA


Promoter Sequence:
>Vu_17182::LG4:32778943-32780943(+)
AAAGTCAATAAAAATTTTAGTTACTTTAATTGTTAATGCGTAATAAATGAAATCATTTATCTTTTTACCTAAATCATGTATTTATAAATATTAGAATGAACTTCAGATGGTTTAATTATGACTCAATTTATACTAATCATGTTTTATCGTAAACTAATTACTATCAGACTTAATCATTAGTTATGAATGACTGCTCGGTCTGTGAGTTGTGATAGCTCGATTTCTTGGATTATCGCGGTGATCGTTGTTAACTATATGAACCGTTTGATTCAGAGTTGACCGGGAGATCCTTCGATACACAACTCATTAGTATTAATTTTTGCAATGTTTTTTTTTCGAAAAAAACTAACCTCACAATTCCAATACTCTTCAATGCAGAATCAAGAAAAAGGTGCACGAGATAAGAGTTGTGTATGTGATGATTTGTTGATTTGTAGTTGTGGTGATTGTTAGAGTGTTTTCAATTTTTGAAGGGGAATTTTTCAGACTTGAATAATATAAGTTGAATCTTTTGATTAACATTTTGTTAAGAGAATAAAGATTTTTTGTTCTGAGAATAAATGTAAAGAAGGAGGTCGCTGTCTAGAGAGTGTATACATAGTCTCCAAAGTGAGAGTTTGGTAGCATCCTGAGTAGAGGGAAAACTGTTGGTTGTGTGGCAACAGGTTTGTTTGGAATATAATAATGTTACTAATACCATGAATTATTAAACAACAGACAAGATGAAAGAGGTTGTGCCATTTTGGGGATAAGATGCTGATGGAATTGACTAATACCACCGTACAATAATGAAACTCAAAACACTTTCATGTATTGTGTGTTATTATTATTATTATATATATATATGATTCAACGTTAGAAGAGAGTTTTCAAATCTAATCAAACTTACAAAATCACAAAATCACAAAATCAATTTATAAGATGAGATTTGTATCCACTTATAAATTATAAATTAGTCTTATATCGGGTAAACGTGGAACTTTCAACACTAAATATGCAAATATTACTTCTAAAACTGCTTTCACATATTCACGTACAGAGAGATTGAAAAAACATGTTCGGTTTTTGAGGGGCCAACCAAGAATCCGATTCTATCTGGGTCTGAACTTTTGCCCTGTAATATTTTTCTATTGGGCTACAAACATGAAAATGTAATGGGGTTTTCTTTTTGCATCCCCAGGTTTACTTCCTACACTATTTAAGTCTCTATATTTAATAAATAAATAAATGGATTCATTTTCGTTGAACTAACATTAAATGTCTTTTGATATGACAAATGACAAATCAAATAGATGCATTATACAATTTATTCTCCTATCAAAGTCTTAAAAGATCAGTATGATTCACTCTTTGTCACATATTTTATAAAGATGAATACCTAACAAAATCAAAGTTTAAACCATAAATAAAATAAATAAATAGCATCATAGTTTCTTAACAAAAACATATTTAACTATAAATAAATAAATAAACTTAAGGTGAAAAGAGTTAGAGGAACCTATTCTTATGCTATAAATCAAAGAGATCACACATATGCAGGACAATACAGTTGCTCCTGTGAATGAATATTTGTCACTGTCTGCTTAACTCTTCTATTAAAGGTCTGTCTTCCCCTCACTATATTTTGTACCATTACATTACATGAGGTTAATTCATGGATCAACAAATATGTTAATTCACTACATTTTGAATGGCCTCATTACTGACTGTTTCTTTCATCAGCTTTTACCATTCTTCCACAGAAACACACTAGGCACAGGGATTGAAAGTAAGGAGAGGGGCAGGTATAAGCTAACCAAAATGGAAACAAAGAAAAGAGGCAAGTGAGACAAAGTCAAGCATTCAAAAGTTGCAATCCATCACACTGTGTTCTTATAATGACATCTTTTGTGCTCTCTTTTGACATCTTCTCTAAGCCAAATACATTCACTTTCTCTTTTTCTCTCTGCCATTGATCAATCCTGGTGGTATACTCAGTTCACCAGTGGCCAAGTAGGCCA


Gene Sequence:
>Vu_17182(+)
ATGGGAAGGGCTCCTTGCTGTGACAAATCTATCGTGAAAAAAGGGCCATGGTCTCCTGATGAAGATGTCACCCTCAGAAACTACCTTGAGAAACATGGCACTGCTGGAAATTGGATAGCTCTCCCCAAGAAAGCAGGTTTCTTTTTTCATCAATCATCACTGTCTGTCTGTGTTATCTCTTCATTCAGTCATTTACATTAAGAATTTTGCCTTGATTACACTATAATGTATGGTGTTTATAAGTGAACATTAAGACTCAAACTCAAATTATAAGATTTATTCTCACATAAAATCTTACATCGACTAAAAATAAGATAATTTCATGTTGATAAGATTCCTGTTTAGTGTTGGAAAATTTTCAAAGTCATGATTTATCATACTTCCGAATTAGTTAGAATGCATTCTTTATGTCTCTAAATGACTACCGTAAATAGTTAAATTTAAAATCTATTTCTTAATAAAAAAAAAGTTATAATGTTGTGGTTTTAGGGCTTAAACGTTGTGGAAAGAGCTGTCGTCTGAGATGGCTGAACTATCTCAGGCCTCATATAAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATTATCTGCACCCTTTATGGCAATATTGGAAGCAGGCAAGTTCTTGTTTTTTTATTATATGAACGTTACCATAAAGTTAAGTTGCATGATATATGTGCATTATTATATGTGTGAATTTGGCTTCAGGTGGTCCCTCATAGCAGCTCAACTGCCCGGAAGAACAGACAATGATGTCAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTTCTAGGAGGAAACACTGGTAGTAGTACTGTTGCCACAAGCTACAACAATGGCACTGTCAGCGGTGCTACTTCTTCTGACCAATTCTCATCTTCTACTATTCAACCTCAAGTTGATGCCTTTGTCTTGAATCAGAAACTGAACTCAGCTTGGTTTGACTCCTACAATAATCTGAATCTGGAACAAACACCAATTTCAGTTCCTCTTCCAATGCCTCAGGAATTAGTATCGTTTAATTATAGTGCACCACCCTCTAATGAAATTTCATTGCCAACTTTCAATGCAGCTTCATTAGCACAGCAGAATGAAGATATACAATGGTTTGGCTATGAATATGCAGAGGAAAATGATCCAAATTTACTTGCTTTTGTGCTTGATGATCTGCTGATGAATCATGGGTCAGCATCTTCTGATCACATTGCTTCGTCATGTGTGGATAACCAAGACTCGTTCTACTCATCAAAAGCTTGA