Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_17176	LG4	32723409	32724677	PREDICTED: leucine-rich repeat extensin-like protein 4	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/C	32723675	missense_variant	p.Ile335Val
G/A	32723706	synonymous_variant	p.Ala324Ala
G/A	32723775	synonymous_variant	p.Phe301Phe
A/G	32723823	synonymous_variant	p.Pro285Pro
T/A	32723921	missense_variant	p.Asn253Tyr
C/T	32723958	synonymous_variant	p.Leu240Leu
A/G	32724036	synonymous_variant	p.Pro214Pro
G/A	32724054	synonymous_variant	p.Tyr208Tyr
G/A	32724060	synonymous_variant	p.Phe206Phe
C/T	32724161	missense_variant	p.Val173Met
T/C	32724170	missense_variant	p.Arg170Gly
G/A	32724180	synonymous_variant	p.Pro166Pro
A/T	32724307	missense_variant	p.Phe124Tyr
A/G	32724369	synonymous_variant	p.Asn103Asn
T/C	32724387	synonymous_variant	p.Glu97Glu
T/A	32724409	missense_variant	p.Glu90Val
A/G	32724411	synonymous_variant	p.Thr89Thr
A/G	32724480	synonymous_variant	p.Pro66Pro
A/T	32724585	synonymous_variant	p.Val31Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_17176.1

MENSCILAFLIFILHSSTTKAVFSVGGGVGVGVGVGVGVGVGVGNGNGGGNGGMVWVGGGINSPEPPGYSVPKPEGAYTALQAWKSAITEDPLNVLESWVGPNVCSYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNTNRFTGSVPDTFRELVFLEELDLSNNQLSGPFPYATLYMPGLIYLDLRFNYFSGALPEELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDIVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPRPLVCGSMAVSNSKHIDP*

CDS Sequence:
>Vu_17176.1

ATGGAGAATAGCTGCATTCTAGCCTTTCTCATCTTCATTCTACATTCAAGTACAACGAAAGCTGTCTTCAGTGTTGGTGGTGGTGTTGGTGTTGGTGTAGGTGTAGGTGTAGGCGTTGGTGTTGGTGTTGGCAATGGAAATGGGGGTGGCAATGGTGGAATGGTTTGGGTTGGAGGAGGGATTAACAGCCCAGAGCCTCCTGGATATTCAGTGCCAAAGCCTGAAGGAGCTTACACAGCTCTCCAAGCTTGGAAATCTGCAATCACTGAGGACCCTCTTAATGTTTTAGAAAGTTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAGCTTTCCCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACTCTCGTCAAAGAGCTGTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACACGAACAGATTCACGGGTTCTGTTCCCGATACATTCAGAGAGCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTTATGCTACTTTGTACATGCCAGGCCTCATCTACTTAGACCTAAGATTCAACTACTTCTCTGGGGCCCTTCCTGAGGAACTTTTCAGCAAGAATCTGGATGCAATATTTCTCAATAACAACCAGTTTGAAGGTGAAATTCCCCAAAACTTGGGTAGCTCCCCAGCCTCGGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTGGGCTTCATGGGGTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGTTGCATCCCTGAAGGAGTGGGGCTATTCACAGAGATGCAAGTTTTGGATGTGAGCTTCAACTCACTTATGGGTCATTTGCCAGACACGCTGTCATGCCTTCAAGACATTGAAGTTCTGAACTTGGCCCATAACAAGCTCTCTGGGGAGTTATCAGACATAGTGTGCTCTTTGAGAAGTCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCGGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAATGCTCTGTCATCCCAGGTGGTAGCCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAACTCTAAGCACATTGATCCTTGA

Promoter Sequence:
>Vu_17176::LG4:32724677-32726677(-)

GAATGTAACAGATACACATTGATTTCCCTAATATCATTATGCCTTACCCTTTTGCATTTGGCAATAAATAACATCTTCCATTTCACTAAGTTTTAGATTCATATAGCTTTACAATTTTGGAATTATATAATGCTTAGTTTGAGTATGACCTGTCATATTACTCAACCACAGACTGTGTTGTGTCACTTTCTCAGTTTCTTTGATTAATTGTGTACTGATAGAACAAAGAGTTTCATGAATAAATTATGTTATAGGCTTCAAGAATTGATTTTCTTTTTATATTTTTAAAACAAGCACTTTAGTTCTTATATTTCTAAAATATGGTAATTCTTTCTTAGATCTTGTACTATATTTGATCAAGGGACTGACTGTAACACACTTTAAAAGATACAAAAATGAAAAGTCATTATTAAGACCAAATCTTAGGTTTTTGTGGAATAATCTAAGTGTAAATCTAAATGTCACTTAGGAATAATCTGAGTATACTTAAGTTCTGGTGGCTATGATTTGAAAATTCAATCAGTTCCACTTGTGTTGCAGAAGATCTGAACAAGAGGAATCTTACCCTTTATTTGTTTTATAATTGGAACGAATATGTTGATGACCAGCCATAGAACTTGGAAGCTAGCTGCTTTTGACTAGTAATCAGAATGGCGTGCGCTACCTTTTTCTCCTCTCAGTTTTCAAACCAGACTTCCTCTGCCTAATGATTGGTTGCTGGAGCATGTTCTCATCATTTAGAAAAGAGAACTGAACACTGAATGTCACTAACTTTTGCTGAACTTTAGAAATTGCCATTGTATAGTATAAATCTGGGAGCATACTTCACTCACAGAATCATTTAAAAACAAGAAATTCCTCCACACTGCTGGGAAAGTTTCTGTACCCTGATGCCTCATGATATTCAATGTCCCCTTTTGCTGATACCCTTTTGATTATTTTAATTTTTCTCCAAGATTTACACTTTCTCAGTTAGGAAATGTTCAATTTTGCTGTTTATTTCAGCAGACTAATTTGTCATTATTGCAAGTTGAGAACTAGAAAGTAAAGGGGTTGTTCCTGCAATAAAGAGCTATTTATTGGGAATAGTTTGATTAGGGCTATTCTAAGAGTAAATGAAAGTTAATTAGTGTTTTCAAAAAATTCTTATGCAGCAATGGAGTAGGCACGGATATTTGGTAGCTAGTAGCTACCAACTGGCAACCATTCATCAGAAATTAAATTCCCTCTACCAGCTCCTTAGTTTAAAAGTACCTTGTGTTTTTTCATCCTTTTGTTTTTCTCCTTATTGCTTGGTACAAAATGAGTTAGCACAGTATCAAATCTCTTAAATGTTTTAGAGTTTCCAAAAGGACGAAAGAGTGTGAACTAAGTTACATGCTCTAATGCTCATACACAGTCATGCCAAGTACACATCAACTTGGCCCTTCTTCTGCTTTCTGGAGATGATTACAAGTGGCAAACACCTTTTCATTTTCACTAATGACATCAACTTTCTTAAATTACAATAGCCAAAATCTTGTTTAGATGCTATGTGTATCATGTGAATGCTTATTAATGCGATCATTTTATTTCAACTAATGATCTTAAATTCAAGTGACCCTTAGAAAAATTTATCCATCGCCCTATGGTTAACTAATTATGTGTTACTGTTATTTTCTATTATTTGCTAGCATGCAGCCACTGATAATAAGATCTATAAAAGTTGTGGCAATTAGTGATTAGTGAGACCATCTCACCTTACCACACTGTTCTGACACTGAAATTTTCACTCAAAGAAGTCAACATCTGTACAGAAAAAGGTGTACAAAGGTATGCCTCAAACAAACGCATTACATAAACTAAAAAGAAAATGGGAAAAAAGAAAGGGAGCATAATCAGCCCCACCACCACCAGTCCACCACTCTCTCTTCAATGTAGCAGCCTTATTTGGGTTTTGGGCAAGCTTAGTTAAGAATCATATCCTCTTGAATTAAGCATTTTGGCATCTTCAGCTAAAA

Gene Sequence:

>Vu_17176(-)