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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17134 LG4 32341348 32341824 hypothetical protein LR48
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Annotations  
category   relationship type   keyword
Biological Process   involved in   secondary metabolic process, aging, oxoacid metabolic process, oxoacid metabolic process
Cellular Component   is active in   cellular_component
Molecular Function   enables   molecular_function
SNP Position Effect Amino acid change
C/T 32341389 missense_variant p.Asp146Asn
T/C 32341516 synonymous_variant p.Leu103Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17134.1
MAEGSSSDAGKGKNIVEDKDYEREFQYKDEMQLEFVFNVGHVKDFELSMPYRAQLTNDKWNLFLRGPYFEDILLQFLKEEEDVKEGLPVTVYDKGGHEFPMMLKKFDKDSITYYVLNRGWFNFCDQKRLQENDVVALRTFRHAITDELSFVVTFTKMR*


CDS Sequence:
>Vu_17134.1
ATGGCAGAGGGTTCATCAAGTGATGCAGGGAAGGGGAAAAACATCGTTGAAGACAAAGATTATGAGAGAGAGTTTCAGTACAAGGATGAGATGCAGTTGGAGTTCGTGTTCAATGTTGGCCATGTTAAAGACTTCGAGTTGAGCATGCCATATAGGGCACAATTGACCAACGACAAGTGGAATCTTTTTCTACGTGGGCCCTACTTCGAAGATATCCTCCTGCAGTTCCTCAAAGAGGAAGAAGATGTGAAAGAGGGACTCCCAGTGACAGTGTATGACAAAGGGGGACATGAGTTCCCAATGATGCTAAAAAAATTTGACAAAGATTCCATCACTTACTATGTGCTCAATCGAGGGTGGTTCAACTTTTGCGACCAAAAACGGTTGCAGGAAAACGATGTTGTTGCACTGCGAACTTTTCGACATGCAATAACTGACGAGTTATCCTTTGTTGTTACTTTTACAAAAATGAGGTGA


Promoter Sequence:
>Vu_17134::LG4:32341824-32343824(-)
GTATGACTTTTGTTTAAAATTTTCAAAGAGTAAAGTTGGATGGTTTTATTATTTGTAAGAGGGTAGAGATAAAAAAATAAAAATACATTTTTCGTTCACATTTTTTTTTTAATTAGGAACTACTGATAATAATAGTCGAATTATCCAACTATATATAGAGATAAAATTATATTCATAACTAAAACCAAGTGTAAGTCATATTTAACTTTATATTTACTACTGTATTATATATAATTAAATGCGTTATACTTTCATTATGTTAATTTGTATTATATTGCATTATGCATCGATACTGTCATAATATTAACTCGTAATAAATATCTTTTAGTCAATGCTAAAATCAATAAATAATGTACATAGTGTAATAGCTAAAATAAAAAATGTAATATAATAAACCGAAAAAAATAAAGGAAAATATAAAAGTAAATAAACATGTCTCATCTACATTCTGAAATAATTACTTATGGGTAAAAATGAAATACAATGTAAGTTATAAGAAGTTAAATACTTGAGATATCTTGTAAAAAAAGACTGCAAGTTGATAAAAAAAAACAATTGTATATAAAAACCTACTAATATACTGAACAAGTTTTCAGTTTGTTAAAAAAAAGGTTAAAAAATAGTTAAAATATTTAACCAATATACTAATGAATTATTTCGGTTCTTATTAAAAAAAATATGTTTTTTTAGTTTTTCTTATTTTGTAAGCATATCAATTAATAATATTTCTATCTTGAATATATTATAAAATACGAAATCAATTGAACAAAATTTTAGTTTAAATAATATAAATTTAAAAGAAATTAGTATTATATTAATCTGAAGAAACTACGCATTATGTTGATGCTATTAGTCTCTTCACTCCCCTGCCTATTCAAAAATAAAATCAAATAAGGTTTTTAAACTCTAAAGTTGGTCCATATATTTAAATTAATTAACACTTCTAATTTTGTTAACATTTTTATATTTAGCATTCAATAAATAATAATTTGATCTTTACCATTATCTTATTATCGTTCACATAATTTTAACATGTTAAATGTCCATTTTTATTGAATTAAATTATTTCCTTAAGAAAAACATTAAATTAATATTTGACTCATAAATTCATGCATTTAAATTTTTATTAAAAAAATTGCAATTCGAGATCTCCTTATAACAAATATGCGATCTATGTTATATGTGAATGAAATGAATTACTCTTTTTTACATGTGATATTGAATGAATTACAAATAGAAAACAATTTAAAGTTATTTAATTATTAAAGTTTAATTAACAATTTTGAAAATCAAAACTAACCTAAAAAAAGGATGAAAAATGTTTTAACATCTCAAGATTTATAAACACTGCCCAATATAAGAGATAAAATATGACAAAAGTATGCCATTAAAATATGATTTTTATTTTTATATAAAACTAATTTTCTGCTTAATAAACAGGGTCATCTTGTTGTTTCAAACTTTTTTAAATGGTATTATTTTTTTACCTCCAATACATTTTTACATACACTTTATATTTACTATTGATACTCTAATACATATAAATCATATAAATTTTTTACATTTATTTTACATATTATTTTCTTTTTAAAAAATATAAAAAAATATTTTTTATCATCATTTTATCTTTATGTATTAAACAAATGTAAATATGTATTACTTTTTAAAAAAAATTGACAACGTTCATGCATAACATTAATTATCCTGAAGGTTAGTCAAAACTTATATAGGACGAACATTACAACATCACAATATCATTTATTAATACACAATATACCTTTATTTGATTGTGTTTCTTGTTCAGTTTTTGACAAGTGCATGTTTCTAGATTTATAAGCTGATAAGGAAAGACGCATATCAGTTGGCTGGAACAGAATCTACCAATGACAAGATATTGATCAAACACTAAAAGTGAGAGGTAGATCATGTATATATATGTTGCCAATGTTCCACAACCTACACATTGTTTCACCAAACACTTGTGTTTCTCTAAGAAAACA


Gene Sequence:
>Vu_17134(-)
ATGGCAGAGGGTTCATCAAGTGATGCAGGGAAGGGGAAAAACATCGTTGAAGACAAAGATTATGAGAGAGAGTTTCAGTACAAGGATGAGATGCAGTTGGAGTTCGTGTTCAATGTTGGCCATGTTAAAGACTTCGAGTTGAGCATGCCATATAGGGCACAATTGACCAACGACAAGTGGAATCTTTTTCTACGTGGGCCCTACTTCGAAGATATCCTCCTGCAGTTCCTCAAAGAGGAAGAAGATGTGAAAGAGGGACTCCCAGTGACAGTGTATGACAAAGGGGGACATGAGTTCCCAATGATGCTAAAAAAATTTGACAAAGATTCCATCACTTACTATGTGCTCAATCGAGGGTGGTTCAACTTTTGCGACCAAAAACGGTTGCAGGAAAACGATGTTGTTGCACTGCGAACTTTTCGACATGCAATAACTGACGAGTTATCCTTTGTTGTTACTTTTACAAAAATGAGGTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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