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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17133 LG4 32336783 32337337 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 32336939 synonymous_variant p.Val133Val
C/T 32336957 missense_variant p.Met127Ile
G/T 32336971 missense_variant p.His123Asn
A/G 32337322 missense_variant p.Ser6Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17133.1
MAGSSSNSGRAKSVVEGNKHAKEIQFNDELHLEFILDAGIVKDCELSLPYGVQLTNDKWNLFLPLLGFEETLIGFLKEEENVRKGIEVKVYDKGCHEYEMMLLKEKEDVRKGIEVKVYDRGGHEFEMMLKKWVIDSNQFYVLNRGWFSFCNEHGLGQGDLVALRAFRHSITDMLCFVVTFRRMR*


CDS Sequence:
>Vu_17133.1
ATGGCAGGGAGTTCATCAAACTCGGGGAGGGCGAAAAGCGTGGTTGAAGGAAACAAACACGCAAAGGAAATCCAATTCAACGACGAGTTGCATCTGGAGTTCATACTCGATGCAGGAATCGTGAAAGACTGCGAACTGAGTTTGCCGTACGGGGTGCAATTGACGAATGACAAGTGGAACTTGTTCTTGCCATTGTTAGGGTTTGAAGAAACCCTAATAGGGTTTTTGAAGGAAGAAGAAAATGTGAGAAAAGGGATCGAAGTGAAGGTGTACGATAAAGGATGCCATGAATATGAAATGATGCTTTTGAAGGAAAAAGAAGATGTGAGAAAAGGGATCGAAGTGAAGGTGTACGACAGAGGAGGCCATGAATTCGAAATGATGCTGAAAAAATGGGTGATAGACTCAAATCAGTTCTACGTGCTCAACAGAGGCTGGTTCAGTTTCTGCAACGAACATGGTTTGGGACAAGGAGATCTCGTAGCTTTGCGTGCTTTTCGTCATTCCATAACTGATATGTTATGTTTTGTTGTCACTTTCAGAAGAATGAGGTAA


Promoter Sequence:
>Vu_17133::LG4:32337337-32339337(-)
GTGGATCTCCTTTTTATTTAATTAATAATATTTATTTTCGTTCAAATCCAATCTTAAAAACCGATATAGTTTAGATAAACTTCCAGTTTTAGACTTATTTTTCTTTGAATAGTATTTAATAATGACAAAATATATAATAGATTCCACAACAAATTTAAAGTTAACCTATATCATTTGTAAGCCATTGAATAGTCCTAATCTTTTTTTAATATATATAGTTAAAATGGCTTTAGTACATTTGACCCAATCAATTTTTTACTCTCTAAAATAACTAAATTTCGTATTTAATACTTCATACAAAAAATAGTTATTCAAAAAAGTTCCATCTTCATCCTCAATCTAATTTGATTAGTTGACATAAGAAAAAATATATGTTTTATTTATAATGAAATCATTAATTACACGTGTACGAGAAATAGACATTTATATTAATTAATTTATGAATAAAAAATCTACATATGATAACATTTTTGTAAATAAAATAAAATAATTATGTCATATATATATTTTTTTCCAACATAAAATAAATAATGTTATGTCAAACATTATAAAGCTTGACATAAATAATTTTTTTTACGTATTCCAAAATGATGTTTGACATAAATGTTTTTCTATATATCATAAAAATGTTCCTCCTCATTCTTTATTGACTTTGTTTAGTTGTTGAGGTTTTTTTTTTTCATTTGTGATGGTAAGTGCGTAGCAAAACCTTTATAGAAATATATAGAAACTTCTGGATACCAAATATATAACATATATTAAAATAAAATAAAAATTAAATTATACATTAATTGCATCAACGTCTCATTTGTTTTTTATTTTGCGATTTTTAGTTATAAAAGTATGTAGGCATTGTTTGTAAAAACACATTAATAAAAAAAACTTCAATTTTTTTTACTGACATTTAAAACCAAAATCAATTCTCTCTTTGGTTCATTTCCACCATTAAATAAAAAAATATATATTAAAATGTGTATTCTTAAGCTTATTTATATTTGAAATATTATTTATCAGAAGAAAGAATTTCTTATAAAATTAGAAATGAATTGGTGAACAAGACAAAAGTTGAGTCATTCTAGAAGATTAAGTTCAACAAATTAAAGGATACCAAGTTTTAAAAGGTAATAAATACCTTGAACTTATACAACTTAATTTACTTTTGGTGTAATCTAACCTTTTTTTTATAATTTTAGCATCTTTATTCACTATTTCTTCTTCAATTTTATCAAAATTATCAAAATCCTTCATTTAATATGCAATATATTAAATTAAAAATGTTCATATCAACGTAACTTTTTTATTGGTTATCAATTTTTTTTTTATCAGACCATACTAGGTCCAACATAATATTGTGCTTTTATGTTAGATACGTGAAAATGTGACAAAAATTTATGTCAGATAGTATCAATTCTAACGTTAACTTTAAGTCGAACACTACCCGACATAAATATACGTCGTGCAGTTTTTATGTATCATAAATTTATGTGTTTTGCAATAACTTTAGACATTTCTCTAATGTAAAATAGTAAAAAAAATAACTTACATAAGCAACTTTCTTGTTATCGTGTTAGTGATTTTATGATTATTTTCTCCATGCTATTTTTCAAAGGATTAAAAATAAATGTATTTTTTGGATGAGTAATTTCTTCAAAATTTAAAGGGATAAAAAAAATAATTATATGAATTTTAAAATCCAAAACATTTTTAATTCTTAAATATATATCATTGAAAATAAAATAATATCTTTAAACTAAAAAAATGCCCAGCAAAAATGATTGAATTGGTAACGGTTGACATTAAAGAGAAAAATAAATATCTAAAATAAAAATAATACTTTAAATTCAAAGATCTTAAAAATGGTTACTTTATAAAACCCATTATAGTCTCTATAGTATTCAAATCCTCACAATAGTTATTCACGTGGTCATGAGGAAGATCCTAGTTCATCAAGAATAACCTAAAATTCGCAGAAAGAATCGTGATTTTCTGCAAAAACATTG


Gene Sequence:
>Vu_17133(-)
ATGGCAGGGAGTTCATCAAACTCGGGGAGGGCGAAAAGCGTGGTTGAAGGAAACAAACACGCAAAGGAAATCCAATTCAACGACGAGTTGCATCTGGAGTTCATACTCGATGCAGGAATCGTGAAAGACTGCGAACTGAGTTTGCCGTACGGGGTGCAATTGACGAATGACAAGTGGAACTTGTTCTTGCCATTGTTAGGGTTTGAAGAAACCCTAATAGGGTTTTTGAAGGAAGAAGAAAATGTGAGAAAAGGGATCGAAGTGAAGGTGTACGATAAAGGATGCCATGAATATGAAATGATGCTTTTGAAGGAAAAAGAAGATGTGAGAAAAGGGATCGAAGTGAAGGTGTACGACAGAGGAGGCCATGAATTCGAAATGATGCTGAAAAAATGGGTGATAGACTCAAATCAGTTCTACGTGCTCAACAGAGGCTGGTTCAGTTTCTGCAACGAACATGGTTTGGGACAAGGAGATCTCGTAGCTTTGCGTGCTTTTCGTCATTCCATAACTGATATGTTATGTTTTGTTGTCACTTTCAGAAGAATGAGGTAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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