Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_17056	LG4	31693009	31695222	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/C	31693072	synonymous_variant	p.Glu717Glu
T/C	31693078	synonymous_variant	p.Val715Val
A/G	31693410	missense_variant	p.Tyr605His
G/C	31693610	stop_gained	p.Ser538*
G/A	31693632	missense_variant	p.Pro531Ser
G/A	31693679	missense_variant	p.Pro515Leu
C/T	31693765	synonymous_variant	p.Pro486Pro
T/C	31694077	synonymous_variant	p.Ala382Ala
G/T	31694129	missense_variant	p.Ala365Glu
G/C	31694149	synonymous_variant	p.Pro358Pro
C/A	31694152	synonymous_variant	p.Pro357Pro
A/G	31694349	synonymous_variant	p.Leu292Leu
T/C	31694353	synonymous_variant	p.Gly290Gly
G/T	31694363	missense_variant	p.Ala287Glu
C/A	31694485	synonymous_variant	p.Pro246Pro
T/A	31694583	missense_variant	p.Thr214Ser
G/A	31694677	synonymous_variant	p.Leu182Leu
G/A	31694720	missense_variant	p.Pro168Leu
C/T	31694729	missense_variant	p.Gly165Asp
A/G	31694752	synonymous_variant	p.His157His
A/G	31694758	synonymous_variant	p.Leu155Leu
C/T	31694769	missense_variant	p.Asp152Asn
G/C	31694796	missense_variant	p.Leu143Val
T/C	31694800	synonymous_variant	p.Gly141Gly
G/A	31694803	synonymous_variant	p.Ala140Ala
G/A	31694804	missense_variant	p.Ala140Val
C/T	31694866	synonymous_variant	p.Pro119Pro
G/T	31694867	missense_variant	p.Pro119Gln
G/A	31694878	synonymous_variant	p.Val115Val
C/T	31694880	missense_variant	p.Val115Ile
C/T	31694901	missense_variant	p.Asp108Asn
T/C	31694927	missense_variant	p.Asn99Ser
A/G	31695046	synonymous_variant	p.Phe59Phe
C/T	31695064	synonymous_variant	p.Leu53Leu
G/A	31695091	synonymous_variant	p.Ala44Ala
G/A	31695100	synonymous_variant	p.Asp41Asp
G/A	31695103	synonymous_variant	p.Thr40Thr
T/C	31695117	missense_variant	p.Asn36Asp
T/A	31695119	missense_variant	p.His35Leu
G/A	31695122	missense_variant	p.Ser34Phe
A/G	31695160	synonymous_variant	p.Val21Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_17056.1

MRKKTYSFHFSLSLSLSLFVVVLLQSLCASEGISHNGPLTDAEATYIKQRQLLYYKDEFGDRGEKVTVDPSFRFENDRLRNAYIALQAWKQAILSDPKNLTLNWVGPDVCNYTYVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALLHINTNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPDVVLRLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCVPAGIGNMKGLNEIILMNNAFRSCFPAEIGLLKNLTVFDVSFNQLLGPLPDAIGGAVSLEQLNVAHNLLSGKIPESICKLPNLQNFTFSYNFFTGEPPRCLALPAADDRRNCLPARPFQRSAGQCKSFLSHPVDCKSFRCKPFVPTLPPPPPPSPPLPSPPPSPVYVPRSPPPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPPPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPVYCVRSPPPPSPPPPSPPPPPSPVFSPPPPVQYYYSPPPPPQHSPPPPPPHSPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPPPCIEPPPPPPSPPPCEEHSPPPPSPHPAPYLPPPSPSPPPPPVQYSSPPPPSSPPVYYYNSPPPPPPSSPPPAPVYEGPLPPVIGVSYASPPPPPFY*

CDS Sequence:
>Vu_17056.1

ATGAGGAAGAAAACCTATTCCTTCCACTTCTCACTCTCACTCTCTCTTTCTCTCTTCGTCGTTGTGCTTTTGCAGTCACTCTGTGCCTCTGAAGGAATCTCCCACAATGGGCCTCTCACCGACGCGGAAGCCACCTACATCAAGCAGCGCCAGCTTCTGTACTACAAGGACGAGTTTGGTGACAGAGGAGAAAAAGTAACCGTAGATCCCTCTTTCCGCTTCGAGAACGACCGTTTGAGAAACGCTTACATAGCGTTACAGGCATGGAAGCAGGCCATTCTCTCTGATCCCAAAAACCTCACGCTAAACTGGGTGGGGCCCGATGTCTGCAACTACACCTACGTCTTCTGCGCTCCGGCACTTGACAACCCTAAGATCCGCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATATCTCCCCGAGGAGCTCGGCTTGCTCACTGACCTTGCGCTTCTCCATATCAACACCAACCGCTTCTGCGGCACCGTGCCGCACAAGTTCGACAAGCTCAAACTCCTCTTCGAGCTGGATCTCAGCAACAACCGATTCGCTGGAAAGTTCCCCGACGTGGTGCTGCGTCTGCCGCAGCTCAAGTTCCTAGATCTGAGGTTCAACGAATTCGAAGGCACGGTCCCCAAGGAGCTCTTCGACAAGGACCTCGACGCCATTTTCATCAACGACAACCGCTTCGTGTTCGACCTGCCGGATAACTTTGGCAACTCGCCGGTGTCCGTGATCGTGCTGGCCAACAACCGCTTCCATGGCTGCGTGCCGGCTGGAATCGGCAACATGAAGGGGTTGAACGAGATTATTCTGATGAACAACGCTTTCAGGTCGTGCTTCCCCGCGGAGATAGGATTGTTGAAGAACTTGACGGTGTTCGATGTGAGCTTCAACCAGTTGTTAGGTCCTTTGCCTGACGCCATCGGAGGTGCCGTGAGTTTGGAGCAGCTCAATGTGGCTCATAATTTACTCTCTGGGAAGATTCCCGAGAGCATTTGCAAGCTTCCCAATCTCCAGAACTTTACTTTCTCTTACAACTTCTTCACCGGCGAGCCGCCCCGGTGTCTCGCTTTGCCGGCGGCTGACGACCGCCGCAACTGCCTACCGGCCAGGCCCTTCCAGCGCTCCGCAGGACAATGCAAGTCGTTTTTGTCACACCCTGTCGATTGCAAGTCTTTTAGGTGTAAGCCTTTTGTTCCTACCTTGCCTCCTCCTCCTCCACCATCACCACCATTGCCGTCACCGCCACCGTCGCCTGTTTATGTCCCCCGTTCCCCTCCGCCCCCACCACCGGTGTACTCGCCACCACCACCACCTCCAGTGTATTCGCCTCCTCCACCACCTCCAGTGTATTCGCCTCCACCGCCGCCGCCACCGCCTCCACCTCCGCCACCTTCACCACCTCCGCCTTCACCGCCCCCGCCAGTCTATTCTCCACCTCCGCCCCCACCTTCACCGCCACCACCATCACCACCTCCGCCATCCCCTCCACCGCCAGTCTATTCGCCACCTCCTCCTCCCCCATCCCCGCCACCACCAGTCTATTCGCCACCTCCTCCTCCACCTTCACCGCCGCCACCTTCCCCGCCACCGCCCTCACCGGTTTATTGTGTAAGGTCTCCGCCACCACCTTCACCACCTCCGCCATCACCTCCACCTCCACCAAGTCCTGTATTCTCCCCACCACCACCTGTTCAATACTACTACAGTCCACCACCGCCACCACAACACTCGCCTCCCCCGCCCCCACCACACTCACCACCGCCACCACATTCACCGCCGCCTCCAGTTTATCCCTATCTGTCACCGCCCCCACCTCCTCCTGTTCACTCTCCACCTCCACCGGTCCATTCACCACCACCACCATCTCCTCCACCATGTATAGAACCGCCACCACCACCTCCCCCCTGTATAGAACCGCCTCCACCTCCGCCATCACCACCGCCTTGTGAAGAGCATTCGCCACCACCACCATCACCACATCCTGCACCTTACCTGCCACCGCCATCGCCATCACCACCACCTCCTCCAGTTCAATACAGTTCTCCTCCACCACCATCGTCGCCACCTGTTTATTATTACAACTCACCGCCGCCCCCACCTCCTTCGTCTCCACCACCAGCCCCTGTATATGAAGGGCCTTTGCCACCCGTCATAGGAGTCTCATATGCATCTCCTCCTCCACCTCCCTTTTATTGA

Promoter Sequence:
>Vu_17056::LG4:31695222-31697222(-)

TTGTTACTTTTGTTATTTTGAAACAAGGAGTCTCACATTTTTTTTATTTATTTTTAACTCCCTCGATTTCTTTTACACCATTAAAAAAAGATTTAGTGAAACGCAGAACCTATTATAAAATTATTTATCTTAAATGATTCCAATTAATATTTTCTCCAAGTTAATTAAAACTCCGCGTCTCTAATCAAACGACTTTCATTATAGAATATATTTACAATATATAAGCTTTTAAGTACATTATTAGTAAGATATCTTATGCACACACTTTAATTAAATTTAATCTACTTAATGAATGATGAATAAAATGTTAAAAATCTTATCAAATATGTATTCTATATTAATGTCATTAATTATTTTACAAAGGATTAACTATTTAAAAACTGGATTCAGTGGTCTTTCTTCACATGTAATGGATGACCCGATGGAAAATTCAAATAAAGTATTATTAAAAAGCGAAAAAGAAGATAAATAATTAATAATGATGTATATACAATTAATAAATATATCAGAGGATACAATATTCTTAAATAAACGAGAGGAAGTTAATTAATAAATTATTAAAGTTTATTATAATTGTGTTTATTTACAAATTATTATTGGTATACATTTTTAAAGCAATAATCATTAAAGTGAATCAATTCACGGTGATGATAGTACATGTGTTTTTTTAATTTCATTAAAAAAAAAGAAAAAAAAAAGGAAACGGTGGAATCTATTAACCAGAAAAAGCCATTAGTTAGAAAGGCGAAAGTCCGTCCAGAAGTTATCGCCATCACGGGAATTGAATTACGGAAAAAGCTCAAGAGGTGTGAGTGCGTGACATTAAATATTACGTATTACGTATTACGTATTTTAATCAGCACTCTACTCGTATACGTATTACGTATTTTATAATCAAATAAATCTCATTCTGTACAATACGAAATTAAATTAGCAACAAAATATATTATTCTCTTATTTTTTTATTAATGGAAATAAAGTTACGGCCATTTAATTTAGTTAGAGAGGTGTTTGATTTGACAGTGGTCACCGACACAGAGGAACAGCTCTCGGATTATGAATCAGCAAAACAAAAATTCTATAGTTAAATTAAATTTGTGGCAATCACAATTTCCACATCATCGTGCTAACGGTTTATAATTACTTTTTAAGCCTAAATCATCTGTCAAATAGAGAGGCGCGTTATAATTTGATGGATGCAACAACTACTGCTACATCACGTCTGTCTTCATAAAATATAACGGAAACAATCATTAGGAAAACCACCTTAGTTTTCAAAAAATATTTTTATTATATCAATTTTCACTAATATTATCGTGAATCTTATTAGTAATAGAAATATAGGGAAGAAATTAGAGTATGTAAAAATATCGATTAATTAATTATTAAGTTTATTTCCTGAAAAGAACGTATTAAATTAATGCATGTTTGGTGGGAATGGTCTAATCTCTCTCTCTTGCCATTCCATCTCTCCGCGTAAACCACTTTATTCAAAGCGTAAGCGAGTGAGTGCCAACTAAGTTTTTTAAAAAAGCAATAATAAAAATAAAAATAATAATGAACTTGTTGCGTCTCGCAAGGAAGGAGCCAGAAAATACCGAAAAAAAAAAAGAAGTAGAAAATGAATTTTGGAAAATATAGAAAAATGAATAAAGAAAAGGAAAAGCGAGTGCGGAAGAGAAGAAGGATAGAGAATCTGGTGGGCTTTGAGCTGTGATTTAGCTGTCCTTTTGATGAATTATTAAATTGTTTTTATTTAATTTTGATTTAAATTTAATTTAAATTATAATTTAACCTCACACATTCCTCTCTCTTCACAGACTCTTATACGCTCCTTCAGGGGTTCTCTCTGGCACTCTTCCTAAATCCCTAGAAAGAAACACAGTGAGTCGCTGACGCGCATTGAGAGCAATCGAGGTGCAGTAGTATTTGAAGCAGATCTGAGAGAAGGGTGGAAGAAATCGCGTGTTGAATTGGGTTGTTCAGATGCGGCATGTGAG

Gene Sequence:

>Vu_17056(-)