Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16839 LG4 29221800 29223899 PREDICTED: transcriptional activator Myb
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 29222086 intron_variant
T/A 29222193 intron_variant
A/T 29222194 intron_variant
C/G 29222222 intron_variant
C/A 29222259 intron_variant
T/C 29222403 synonymous_variant p.Phe47Phe
T/A 29222598 stop_gained p.Tyr112*
A/T 29222605 stop_gained p.Lys115*
A/G 29222763 splice_region_variant&synonymous_variant p.Pro167Pro
C/A 29222777 intron_variant
T/C 29222813 intron_variant
C/A 29222877 intron_variant
A/T 29222897 intron_variant
A/T 29222912 intron_variant
T/G,C 29222936 intron_variant
T/C 29222940 intron_variant
C/A 29222953 intron_variant
G/A 29222978 intron_variant
T/C 29222985 intron_variant
C/T 29222992 intron_variant
C/T 29222995 intron_variant
T/G 29222999 intron_variant
T/A 29223014 intron_variant
T/C 29223045 intron_variant
T/C 29223050 intron_variant
A/T 29223067 intron_variant
T/C 29223147 intron_variant
T/A 29223161 intron_variant
T/G 29223229 intron_variant
T/A 29223270 intron_variant
A/C 29223386 intron_variant
G/A 29223526 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16839.1
MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYNTKQPLFPPNLDTNFETNSIPSFVDKYYEKFTHTPFHFPNTFHFQHPTSASTLPPEKSQSVEFYDFLQVNTDSNKSEVTDIARRDEEEVSQDAVELKNIGVPFIDFLSSGAY*


CDS Sequence:
>Vu_16839.1
ATGTGCAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAGCTTCGAGAACTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTTCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTTAATCAATTGGACCCGAGAATAAACAGAAGTCCTTTTACGGAGGAAGAAGAAGAGAGGCTTCTTGCTTCTCACAGGATTCATGGAAACAGATGGGCTGTGATAGCAAGACACTTCCCAGGAAGAACTGATAACGCAGTGAAAAACCATTGGCATGTGATGATGGCAAGGATTCGGAGAGAAAGATCCAAAGTTTATAACACCAAACAGCCACTTTTTCCTCCAAACCTTGACACCAATTTTGAGACTAATTCTATCCCTTCTTTTGTTGACAAGTATTATGAAAAGTTCACACACACCCCTTTTCACTTTCCCAACACCTTTCACTTTCAACATCCAACTTCTGCTTCCACACTGCCTCCAGAGAAGAGTCAATCAGTAGAGTTCTATGATTTTCTTCAAGTGAATACCGATTCCAATAAAAGTGAAGTGACAGACATAGCCAGAAGAGACGAAGAGGAAGTGAGTCAAGATGCTGTGGAACTGAAGAACATTGGTGTTCCATTCATTGATTTTTTGTCTTCTGGAGCATACTAA


Promoter Sequence:
>Vu_16839::LG4:29219800-29221800(+)
TATTTTCATACTTTTGTACCATTCTGAAAGAAAATGGATAAAACGTGATGTAATTTTTCTAAAATAATGCTTGACATCATCATACAATTACTCTGTGTAATATTTAATTAGATAGAGAAAGAGATAGATTTCTAATTTTTTTAAATAAATACAAGCATTATTTACTAACAAACATAGTTATTAAATATGAATTAATAAGATTTCCTCATTTATTATAGCTTATGTCTAACCATATTGATATTATATTAATGTGAATCTATATGTTTTGATATAAAATTTATATATAAAAAGAAATATGTGTTATCTATATTTGTTTTAAAATTTTGTAAAATAAACGATCTGTGGTATAGTCATATTTCTTTTTCGTTTTAAAATTTTATAATCTCTACTTTTAGTTGTTAAATGAATGAATTTATATTCATGTAGGTAATTTTTAAAAAATTTGAAAATCACTATCTTGTCCTTGACACTCAACATAAATTGATGATCGCTAATAATCTTAATTTTTTTAGAATTTTTGTTTATTAATATTAAAGAACAAACTCTATATCATTGAAAACATTGTTTAACCTCTGGATAACACACAGAGAATAATTAACTGTTCGCATAATTTAAATTAAAAACAGTGATTTTCTATTTTAGAGGATAAAAAAATACAAAAATATAATAAAAAATAATTTATTTTACAAGAATAAAAACATTAAGTTTTATTTTTCTATTTATTGCTACTAATAATTAGTTACAAAATATAATTATATATATGAAAAAGAATTTCTAAAATCTTTTGTAGGTGAAAGGAAGAGAATTTTTTTTATTAGTTATCTAGAAGATAATTGAATCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTATATTTTTATGTGGGTTAGGAGACAAAGAGAGGGTAGACCAGATGTTTGACTCAAAAGAAAATAAAGTTAATTATTAAATGATGGAATAATCTTGAACACGTGCACATGTATATATGTAAGGATTCCAAAGCCAAATAATGTAGTTAGTTATGTCCCACAAAAGTTAATCAAATCAAACCTGAAACATATCCATCTCTATGCATATAACTTCCAAATATAGCCTAACAACAACACCAAACTCTCCCAAAGATTAATTTTTTTCATGTAAAAATATTAAACATTCCTCCAAATTGTTATTGTTTTGCATGTCACACAAACAAAACCTAGTCATTTGTATATGTCAAAACTACTTTTCTTAGGTGAATACCATGTATCTGTCCCTAGGGTTGAATTTTCCACGTACATGCACGGCTAAAATTATTAAACCATTATTCATTTTATTCTCTCGAAAAGCACTTTTTAGTCTCGATGGCAAAGTGATTCACGTTTTATCTTCATTGTCGTCGTGTATATAAGACATGCCCATTTTGTGGAAAATTGAAAACCGTATCCCATGTCAATGAAAATTCCATTAGCAAATACATAAAATATGGAAAAATAAGCACGATTGGTGGGTTATAAGTAGACGTTGTAGGTTAGAAACTTGGAAAGATGTTGAAAGCAGAACCAAACTCGCTTCTCTAAGCAACCTCTTTTCTTTCGCTCACATCATATATATATATATACATATATGTATATATAAATTATAATATATTGTTTTGTTTTGTTTATTTGTGTGTTTGAGTGTTACTTATAAGAGGGTTTGTTAGCCAAAACGTTTGCATCAGTCGCAGGTGTAAGAGGTTTGTCCAATCCCTCCAACTCTCTAACGGAAAACACTTTCCCATCTTCCCCCACCATTATTCTCTTCTTCTGTCTCTTTCTACTGCCTTGTCTTTATTCTTATTTTCTTATCTCTCTCTCTCTTATACCTTCAATATTCCTTGCTCATCATAGTTTAGGGAGAGGAAGATATAAAGATCTTCACACAAGAGGGGTGGAG


Gene Sequence:
>Vu_16839(+)
GGAGCAAAAGGGTAGGGAAAATAACATACCCTATTCTTCAATTAGGGTTTTTTTTTCCTCTTTCTGTTCTTTCTTTCTGTTTTAGCTTCTGGAGCCAAGTAATATGTGCAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAGCTTCGAGAACTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTTCGAGGAAGATCAGGTGAAAGATCAAACACCTTATTTCATTACAAAATAGTAAGGTTTAGCGATCTAGCAAAAGATGAAAAGCTAGCACAACCTAACTGGTTTAACTTTGCTGTAGCCAGTGATTATTATCACAGTATATTTTGGTACTCGTAATAGAGTAAAATTTTCTTGGGATGAAGAAATTATGTTATTCTGTTTGAGAAACCCATTAGGGTTACACAGAAAAGATTAATCTTCTAGGGTTGATTAAAGATCTGTTAAACAGTAAGATCTCTGTTACACACTAACATGTATGTAAGTATAGAAAGTAAGATGTGTGGTTAATTAGATAGTGGTGTGAAAGTGTATAGTGATGATGATGATTGTTGTGCAGGGAAAAGCTGTAGGTTGAGATGGTTTAATCAATTGGACCCGAGAATAAACAGAAGTCCTTTTACGGAGGAAGAAGAAGAGAGGCTTCTTGCTTCTCACAGGATTCATGGAAACAGATGGGCTGTGATAGCAAGACACTTCCCAGGAAGAACTGATAACGCAGTGAAAAACCATTGGCATGTGATGATGGCAAGGATTCGGAGAGAAAGATCCAAAGTTTATAACACCAAACAGCCACTTTTTCCTCCAAACCTTGACACCAATTTTGAGACTAATTCTATCCCTTCTTTTGTTGACAAGTATTATGAAAAGTTCACACACACCCCTTTTCACTTTCCCAACACCTTTCACTTTCAACATCCAACTTCTGCTTCCACACTGCCTCCAGGTATTGCATTTCCTGCTTTCTGCAACTTCATTCAATACTTTCTTTCTTTATGTATATGTATAAAATTATAATAAGGATATGCTTGATGAAGCTGATTTACAAATGAAGAGATCAAATTATTACTTTGTTCATAAAGAAACATATTTAAAATATAATTTATGAATGAGAAATTATATATATTTTTCACACACTAAATTTTCATATTCATTTCACGTTATTCTTTTTTACTTCTTATTTTCATATTTTTTTTAAAAATACAAAAATTCATTTATTTATTGAGTATTTTACTCTTGTGTTAAATAAATGTAAAACTGTATTATCTTCCTGGTACTCGTTATGAAATTACTAATCTAAATAACTTATATATAAATTAACTTTAAAATTACCAAAATAAACTCGTATATCAAACAAATTTGTTTCACTCAAATCGGCTCATAAACTACGTGAAATCCTATATTCACAATTTTGTCTTTTAAATGACATGTCAAAGATTTATAAGAAAATGTGTTTTTAAATTGTTCAAAACAAGAAGTATATGAAAATATGTTCTCTATATTTATATCCAACCAAGAAGTATATGAAGACATATTCTATATATTTATATAGGGTTGTTCTAAGTACAAAGTAGAATCTCATAGTTTTCAATGCAACTTTTTTCTTTTTGTCTTATTATGTGTCCTTAGGGTACTGAAACTAATATTTCTGTTCTTGCACGAATCATGCGTTGAAGTGAATAGTGATATTTTGGCATTGGGTGATGAGTTAATAATGAAAATCTTGGTCTGATATAATGTTGCAGAGAAGAGTCAATCAGTAGAGTTCTATGATTTTCTTCAAGTGAATACCGATTCCAATAAAAGTGAAGTGACAGACATAGCCAGAAGAGACGAAGAGGAAGTGAGTCAAGATGCTGTGGAACTGAAGAACATTGGTGTTCCATTCATTGATTTTTTGTCTTCTGGAGCATACTAACATAATTGCCAACGCACAACAACTGCAACAACCTTAATTACCCATTATTCCTATGATCGTTTCAACCTGACCATCGAGAACAATATCTCGACTTTAGAGCCATTCATGTAACCTCCTTCTGTATTCACAACGTATTTAATATACATGTACATTTATAACATGT