Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16826 LG4 29045229 29048370 homeobox-leucine zipper protein HDG11-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 29045238 synonymous_variant p.Pro711Pro
C/A 29045394 missense_variant p.Arg659Ser
C/T 29045490 synonymous_variant p.Ser627Ser
C/A 29045502 synonymous_variant p.Gly623Gly
T/C 29045526 synonymous_variant p.Pro615Pro
A/G 29045598 synonymous_variant p.Asn591Asn
G/C 29045630 intron_variant
C/T 29045633 intron_variant
A/G 29045670 intron_variant
A/G 29045680 intron_variant
G/A 29045688 intron_variant
G/C 29045765 synonymous_variant p.Pro575Pro
A/G 29045848 intron_variant
T/C 29045871 intron_variant
C/A 29045893 intron_variant
G/A 29045929 stop_gained p.Arg548*
G/A 29045989 missense_variant p.Arg528Cys
T/C 29046094 missense_variant p.Thr493Ala
T/C 29046166 missense_variant p.Lys469Glu
T/A 29046202 intron_variant
A/G 29046213 intron_variant
A/T 29046219 intron_variant
G/A 29046220 intron_variant
C/G 29046280 missense_variant p.Asp459His
G/A 29046377 synonymous_variant p.Tyr426Tyr
T/A 29046410 synonymous_variant p.Thr415Thr
G/A 29046481 intron_variant
C/G 29046493 intron_variant
C/A 29046617 synonymous_variant p.Ser369Ser
A/C 29046620 synonymous_variant p.Val368Val
A/T 29046752 intron_variant
G/A 29046780 intron_variant
G/T 29046789 intron_variant
G/A 29046804 intron_variant
C/G 29046815 splice_region_variant&intron_variant
A/C 29046817 splice_region_variant&intron_variant
C/A 29046818 splice_region_variant&intron_variant
G/T 29046898 synonymous_variant p.Thr307Thr
G/A 29046941 intron_variant
A/G 29047153 synonymous_variant p.Thr256Thr
A/T 29047301 missense_variant p.Phe207Tyr
A/T 29047340 missense_variant p.Leu194His
T/G 29047346 missense_variant p.Asp192Ala
A/T 29047349 missense_variant p.Leu191His
C/T 29047390 synonymous_variant p.Gly177Gly
G/A 29047438 synonymous_variant p.Leu161Leu
G/A 29047462 synonymous_variant p.Tyr153Tyr
G/A 29047499 splice_region_variant&intron_variant
T/C 29047537 intron_variant
T/C 29047600 splice_region_variant&intron_variant
C/A 29047627 missense_variant p.Leu134Phe
A/C 29047634 missense_variant p.Leu132Trp
C/T 29047642 synonymous_variant p.Glu129Glu
C/T 29047756 synonymous_variant p.Arg91Arg
C/A 29047848 intron_variant
C/T 29048022 missense_variant p.Arg47His
A/G 29048072 intron_variant
A/G 29048100 intron_variant
A/C 29048149 intron_variant
C/A 29048150 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16826.1
MEYGSGSPGDLHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRQENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFASQGLGGPSLDLDLLPGSSSAMPNVPPFQPACLSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKGPDGRDVLDLDTYERMFPKANGHMKNPNVHVEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTVVTIARTIEVISSGMMGGHSGCLELMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDLPNGYSKVTWIEHVEVEDKTPVHRLYRNMIYSGIAFGAQRWLTTLQRMCERIACLMVTSNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLSGSGMNEIGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGAHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQGEQDGGGASSSTSSGRVMGGSGGSLITVAFQILVSSLPSAKLNFESVTTVNSLIGNTVQQIKAALNCPSS*


CDS Sequence:
>Vu_16826.1
ATGGAGTATGGAAGTGGGTCTCCTGGTGATCTCCATCATCACCATGATGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCCAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAACGGATGCAGTTAAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCTGATAATTCTGCACTCCGGCAAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAGGCCTTGAAAAACGTTATCTGCCCTTCTTGTGGTGGTCCTCCCATCAATGACGATTGTTATTTTGATGAGCAAAAGTTGAGATTGGAGAATGCTCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATCGGAAGGCCAATTTCTCAGCTCCCACCTGTTCAACCTATTCATATATCTTCTCTGGACTTGTCAATGGGGAGTTTTGCAAGCCAAGGGTTGGGTGGTCCTTCACTTGATCTTGATCTTCTCCCTGGGAGTTCCTCGGCCATGCCGAATGTGCCTCCTTTCCAACCCGCATGTCTTTCGGACATGGATAAGTCCCTCATGTCGGACATTGCCTCAAATGCCATGGAAGAAATGATCAGGCTACTGCAAACAAATGAGCCCTTGTGGATGAAAGGTCCTGATGGGAGGGATGTCCTTGATCTTGATACTTATGAAAGAATGTTCCCCAAGGCTAATGGTCACATGAAGAACCCCAATGTTCACGTTGAAGCGTCAAGAGATTCAGGAGTTGTCATTATGAATGGCTTAACTCTGGTTGACATGTTCATGGACCCGAACAAGTGGATGGAGCTGTTTCCCACCGTTGTCACAATAGCAAGAACGATTGAGGTTATATCTTCTGGAATGATGGGGGGTCATAGCGGTTGTTTGGAACTGATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACCAGAGAGTTCTACTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAGTAGATGTTTCGTATGATTTTCCTCAAGACAACCAATTTGCTCCTCAGTTTCGATCTCATCGTCTGCCTTCTGGTGTCTTTATTCAAGACTTGCCTAATGGATATTCCAAGGTTACCTGGATTGAACATGTAGAGGTTGAAGACAAAACACCAGTTCACAGGCTCTACAGAAACATGATTTACAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGAATTGCTTGTCTTATGGTGACTAGCAATTCCACCCGCGATCTTGGGGGAGTGATTCCCTCACCTGAGGGAAAGAGAAGCATGATGAAACTTGCACAAAGAATGGTCACCAATTTTTGTGCAAGCATCAGTGCATCAGCTGGACACCGATGGACCACACTCTCTGGTAGTGGGATGAATGAGATTGGAGTGAGAGTCACTGTGCATAAGAGCACAGACCCTGGCCAACCTAATGGTGTCGTGCTAAGCGCAGCCACCACCATTTGGCTCCCAATCCCTCCACAAACAGTGTTCAATTTCTTCAAAGACGAAAAGAAAAGACCTCAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGGGCACACCCCGGTAACTGCATATCTGTGCTTCGGGCTTTCAACACAAGTCAAAACAATATGCTGATCCTGCAAGAGAGCTGTGTGGACTCATCAGGGTCCCTAGTGGTGTATTGTCCAGTTGATCTTCCAGCCATAAACATAGCAATGAGTGGGGAAGATCCTTCGTACATTCCGCTCCTTCCATCAGGGTTCACGATTTCACCAGATGGACAAGGTGAGCAAGACGGTGGAGGAGCCTCAAGCAGCACAAGCTCAGGTAGGGTGATGGGGGGGTCTGGGGGATCACTGATAACTGTTGCATTCCAAATCCTAGTTAGCAGCTTACCATCTGCGAAACTGAACTTTGAGTCTGTGACGACTGTTAATAGCCTCATCGGCAACACTGTCCAGCAAATAAAAGCTGCCTTGAATTGTCCAAGTTCCTGA


Promoter Sequence:
>Vu_16826::LG4:29048370-29050370(-)
TATAATAATATAACAAGTTTAATTTTAGTGTTCTATTAATATAAAACAAAATTAGGCACCCAATCAGTACAAAATCATTATTTTTAAATGCCATTATTTATAAAGAAGTTTATAATTGAATTACAATATTTCCTCTATTAGTATATACACCATTTATTACTCATATCAAATAATTGATTGTTTAATAATTTTGTAGCATACTGAATAATTTTCTTAAAGGAGTTATCTTAAATCATATATATCAAATAGAAAAAAACAATCTCAACTCCCAATCATGTCCTAAATATAGAAAAAATATTAATTATACAGCTAATCATTAAATATATATCATAATTTAATTGATTTAGCTCCTTAAATCTTAATTAGGCCTCCTAATTATCACAATAGGTCAATTTCATCTGTGTATTCGAATTCATATTCTAATGCAAATGAGTGAAAATGCACAATTATGATATTTAAAGAACCAATTAACATAATTAGAAATGAGAGTAGCTGAAATAATATATTTATGATATGAAAAAATTCAATTAATACAATTAAAACATAAATTTTTTTTATCACACAATGATAATATATATTTAATGAGGCAAACATAACTTCAACAGAAAATAGAAAAAAAGAAGTATTAGTGACGTTTAATAGTCAGAAATTTAATTAAGATGCATAAAATCATAAATTCTAATTTTAATGTTCATTAAGATAAAAAAGAAAACTCTAGAATTTTGATTTTCACTGTAAGCAACATGCATTGGTTGGTTTCATGTGGGTAAATTTGAAAGGTGCCAATCTCGCATCGCATGATTCTAATCCTTAACTCCGCCAATGGGATACCAACGTTTGACTTTTGACACCCCTCTCAGCATGTGTGTGACCTCAGAATGGAAAACCAAGAGAGAGAAGACTCAAGGGCATGCATAACCATAAATGAAGAGAGAGAGAAAGAGGGTGGCAAAAACCAAAACCCCCGCCACGTGCAGCCGAACCAGGGCGGTGCTCCGGCTGCCCGGAAACCGGTTCCTCATTAAAGGCTCCACTGGGGCACACCCTGGTGGTGTGGCTGTACCACTCTAGGAGAGAGAGAAAGTGAGTTAGTCTGTATTGTTATTGATATTATTATTATGATTATGATGATGTAGAAGTAGTAGTGTAGTGCAGTGTGTGAGTGTAGATAGATAGAGATTAGATAGCACCTCTTTAAGTCTCTTCCTTTCTTTCTCCGCGTTTTCTCTCACAAAGCCAACGACGCTTTAAAAGCCCCTCCATCAGTTACGCTTTCTTTTCACTTTGTGACACCATATCATCAATATACACATACATATATAATATATAATATTATATTATACTATACTTTAAAAGGGTACAAGTAAGAGTGTTCATTCATTCATTCATTCATAGGTGCAAACACAGACAAGAGTTTATAGAGAGAGAAGAAGAGAAGAAGAGGTGGTGAGGCATGGTGCTGTGTTGGTGAGTGAATGTTTTTTTTTTTTCTTTTGGTTTTTCTTGGTTGATTATTAGATCAGCAACAGCAGCAGCAGCTTCTGTATTGAGCATCCCTTGAGATTTGCCATAACTCACTCTCTCTCTCTCTCTCTCTCTCAAATCATGCCGCTATCTTTGATGGTCACAGCCGTTTCAGAATAATATATAATTAATAAAATTATATATGTTGTTTTGATTGTTGATGTTATCATGTTATTGTATTTGCCATTTTGCTTTGCTTCTCAAAACACACACAGCATAATAGCCACATAGCCTTGTAGCCTTACCCATCAAAATCACATCACAAAAAGTTCTCTCTCTTTTTTCACACCCACTTTCCAAATTCCCTTGTTTCTTCTTCTTTTTCTTGTTTCTTAAGCTTTTTTCTTTGTTTCTTCTGTCTTTTCTTTTGTTTCTCAATGGCTATGATGTCATGGGAGTAGCTGATTCAGTAGAGAGATAGTGGTGGTGGTGAGAGTGATCAAGAGAGAGAATTAGAAAGAGAGGAAGAGACAAAA


Gene Sequence:
>Vu_16826(-)
ATGGAGTATGGAAGTGGGTCTCCTGGTGATCTCCATCATCACCATGATGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCCAACCAGATTCAGAGGCTTGAATCGTAAGAACCATTATTTTTTTCATTCATTTCCTTTCAAAGTTTTGCTGTTTTCATTTCTTTGTTTCATGTGATGTCTTTTTGCATTCCTTGTTTCTGAGGTTGCTTCTTCATGAACAGTTTAAAAAAACTCATTTGCACCCTTCTAATTTTGTGGTCCCTCTCTCTCTCTCTCTCCCTTTTCCTTTCTGCTTGTTTGGTGTTTTTCCAGGATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAACGGATGCAGTTAAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGTAATATTATGTTCTTTAATTTTTTTCTCTTTGGATCATAGAAAAGTTTAGTTTTTTTGTGTGGTTATGTATTTGAACGTTTCATTCATGGTGATAAGACTGTTTTTTTGGTAAATTCAACAACAATTCAGGCTCAGCATGAGAGAGCTGATAATTCTGCACTCCGGCAAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAGGCCTTGAAAAACGTTATCTGCCCTTCTTGTGGTGGTCCTCCCATCAATGACGATTGTTATTTTGATGAGCAAAAGTTGAGATTGGAGAATGCTCAACTCAAAGAGGAGGTACACAGGCTTTCTAATTCACGAATTCTTTGTTTAGATTTATGAATGTGAATATATATATGGCTATTTTGATACTGTTGTCCATTGAAAGATTGGTTCAATTCGCAGCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATCGGAAGGCCAATTTCTCAGCTCCCACCTGTTCAACCTATTCATATATCTTCTCTGGACTTGTCAATGGGGAGTTTTGCAAGCCAAGGGTTGGGTGGTCCTTCACTTGATCTTGATCTTCTCCCTGGGAGTTCCTCGGCCATGCCGAATGTGCCTCCTTTCCAACCCGCATGTCTTTCGGACATGGATAAGTCCCTCATGTCGGACATTGCCTCAAATGCCATGGAAGAAATGATCAGGCTACTGCAAACAAATGAGCCCTTGTGGATGAAAGGTCCTGATGGGAGGGATGTCCTTGATCTTGATACTTATGAAAGAATGTTCCCCAAGGCTAATGGTCACATGAAGAACCCCAATGTTCACGTTGAAGCGTCAAGAGATTCAGGAGTTGTCATTATGAATGGCTTAACTCTGGTTGACATGTTCATGGACCCGGTTAGTACTTTTTGATAATCTTTTTTATGTTTTAGATTGCCGGCAAATGAAACCTTCAATTCAATTCTCTAAATTACTCAAACGTCGTGATTTGTTTTGCAGAACAAGTGGATGGAGCTGTTTCCCACCGTTGTCACAATAGCAAGAACGATTGAGGTTATATCTTCTGGAATGATGGGGGGTCATAGCGGTTGTTTGGAACTGGTATGTCGAAAGTTTGTCCAAATTATCTTCTTACAGTTTTTCCATTCTTGTTTTGTTCCACTGTTATTTTTGATATTTTTTTTGGGATGATGTAGATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACCAGAGAGTTCTACTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAGTAGATGTTTCGTATGATTTTCCTCAAGACAACCAATTTGCTCCTCAGTTTCGATCTCATCGTCTGCCTTCTGGTGTCTTTATTCAAGACTTGCCTAATGGATATTCCAAGGTAACCTTAAACACTATTTTGTTAGCCCTTTACGTGCAATTTTGTTCACTCTTCTTTGTTATCATGTAGGTTACCTGGATTGAACATGTAGAGGTTGAAGACAAAACACCAGTTCACAGGCTCTACAGAAACATGATTTACAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGAATTGCTTGTCTTATGGTGACTAGCAATTCCACCCGCGATCTTGGGGGAGGTATACAAATTGCACTGTTACAATCTCACTTGTGTTTAATTTTCTAGCTATGATTTGAAGATATTATAATTTTTTTTTTCAGTGATTCCCTCACCTGAGGGAAAGAGAAGCATGATGAAACTTGCACAAAGAATGGTCACCAATTTTTGTGCAAGCATCAGTGCATCAGCTGGACACCGATGGACCACACTCTCTGGTAGTGGGATGAATGAGATTGGAGTGAGAGTCACTGTGCATAAGAGCACAGACCCTGGCCAACCTAATGGTGTCGTGCTAAGCGCAGCCACCACCATTTGGCTCCCAATCCCTCCACAAACAGTGTTCAATTTCTTCAAAGACGAAAAGAAAAGACCTCAGGTTGTGACAGTTTGACCGAGTTGTCTTATCTGATGTTTTAATTTTGAGAAATGTTTTAACATTTCCTTTTGTTGTCTTAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGGGCACACCCCGGTAACTGCATATCTGTGCTTCGGGTAAGCCATGGTTTTTTTCTCTCCATTATGTTAATTTGAATTGTTGTGAATCCTTAAAGATAATAGAATGTTGGTAAAAAAAAGCATCATATGCCTTTGTCCTTGATGTTCTATTGTAGGCTTTCAACACAAGTCAAAACAATATGCTGATCCTGCAAGAGAGCTGTGTGGACTCATCAGGGTCCCTAGTGGTGTATTGTCCAGTTGATCTTCCAGCCATAAACATAGCAATGAGTGGGGAAGATCCTTCGTACATTCCGCTCCTTCCATCAGGGTTCACGATTTCACCAGATGGACAAGGTGAGCAAGACGGTGGAGGAGCCTCAAGCAGCACAAGCTCAGGTAGGGTGATGGGGGGGTCTGGGGGATCACTGATAACTGTTGCATTCCAAATCCTAGTTAGCAGCTTACCATCTGCGAAACTGAACTTTGAGTCTGTGACGACTGTTAATAGCCTCATCGGCAACACTGTCCAGCAAATAAAAGCTGCCTTGAATTGTCCAAGTTCCTGA