Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16804 LG4 28782147 28783916 PREDICTED: TMV resistance protein N-like isoform X4
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 28782148 start_lost p.Met1?
G/A 28782149 start_lost p.Met1?
T/A 28782152 synonymous_variant p.Ala2Ala
C/A 28782162 missense_variant p.Pro6Thr
A/T 28782175 missense_variant p.Tyr10Phe
T/C 28782191 synonymous_variant p.Phe15Phe
C/T 28782206 synonymous_variant p.Gly20Gly
C/T 28782208 missense_variant p.Ser21Leu
C/T 28782229 missense_variant p.Thr28Ile
T/C 28782234 missense_variant p.Tyr30His
T/A 28782253 missense_variant p.Leu36His
G/A 28782255 missense_variant p.Asp37Asn
A/C 28782258 missense_variant p.Ser38Arg
T/G 28782265 missense_variant p.Ile40Ser
A/G 28782270 missense_variant p.Ile42Val
T/C 28782273 missense_variant p.Phe43Leu
A/T 28782276 missense_variant p.Ile44Phe
G/A 28782296 synonymous_variant p.Gln50Gln
C/A 28782316 missense_variant p.Pro57Gln
G/A 28782327 missense_variant p.Glu61Lys
G/T,A 28782336 stop_gained p.Glu64*
C/T 28782353 synonymous_variant p.Ala69Ala
G/C 28782362 synonymous_variant p.Val72Val
A/T 28782409 missense_variant p.Glu88Val
A/T 28782411 missense_variant p.Ile89Leu
A/C 28782413 synonymous_variant p.Ile89Ile
C/A 28782422 missense_variant p.Asp92Glu
T/C 28782427 missense_variant p.Phe94Ser
A/G 28782429 missense_variant p.Lys95Glu
A/C 28782436 missense_variant p.Lys97Thr
A/C 28782437 missense_variant p.Lys97Asn
A/G 28782438 missense_variant p.Lys98Glu
T/A 28782455 synonymous_variant p.Pro103Pro
C/G 28782478 missense_variant p.Ser111Cys
T/A 28782496 missense_variant p.Leu117Gln
G/A 28782499 missense_variant p.Gly118Glu
T/C 28782503 synonymous_variant p.Ser119Ser
G/A 28782508 missense_variant p.Gly121Glu
A/T 28782533 missense_variant p.Glu129Asp
C/A 28782540 missense_variant p.His132Asn
T/G 28782545 missense_variant p.His133Gln
A/C 28782548 missense_variant p.Lys134Asn
T/G 28782550 missense_variant p.Met135Arg
A/G 28782552 missense_variant p.Lys136Glu
T/A 28782557 missense_variant p.Asn137Lys
A/T 28782565 missense_variant p.Lys140Met
G/A 28782569 synonymous_variant p.Ala141Ala
A/G 28782578 synonymous_variant p.Glu144Glu
A/G 28782585 missense_variant p.Asn147Asp
C/A 28782588 missense_variant p.His148Asn
A/G,T 28782589 missense_variant p.His148Arg
T/C 28782590 synonymous_variant p.His148His
A/C 28782601 missense_variant p.His152Pro
G/T 28782608 missense_variant p.Glu154Asp
T/C 28782617 synonymous_variant p.Tyr157Tyr
G/C 28782618 missense_variant p.Ala158Pro
A/C,* 28782638 splice_region_variant&synonymous_variant p.Val164Val
G/T 28782639 splice_donor_variant&intron_variant
T/A 28782644 splice_region_variant&intron_variant
T/C 28782647 downstream_gene_variant
A/G 28782654 downstream_gene_variant
T/C 28782659 downstream_gene_variant
T/G 28782664 downstream_gene_variant
C/G 28782666 downstream_gene_variant
G/A 28782684 downstream_gene_variant
A/G 28782687 downstream_gene_variant
C/A,* 28782699 downstream_gene_variant
T/G 28782705 downstream_gene_variant
G/A 28782710 downstream_gene_variant
G/C 28782723 downstream_gene_variant
A/T 28782729 downstream_gene_variant
A/G 28782735 downstream_gene_variant
A/C 28782756 downstream_gene_variant
A/G 28782807 downstream_gene_variant
A/G 28782816 downstream_gene_variant
G/C 28782818 downstream_gene_variant
G/A 28782832 downstream_gene_variant
G/A,T 28782843 downstream_gene_variant
T/C 28782847 downstream_gene_variant
G/A 28782850 downstream_gene_variant
T/C 28782854 downstream_gene_variant
T/G,C 28782856 downstream_gene_variant
G/A 28782861 downstream_gene_variant
A/T 28782866 downstream_gene_variant
A/G 28782898 splice_region_variant&intron_variant
A/C 28782902 splice_region_variant&intron_variant
C/G 28782903 splice_region_variant&intron_variant
C/T 28782907 missense_variant&splice_region_variant p.Ala165Val
A/T 28782908 splice_region_variant&synonymous_variant p.Ala165Ala
A/T 28782910 missense_variant p.Gln166Leu
G/A 28782919 missense_variant p.Arg169Lys
C/G 28782923 missense_variant p.Asn170Lys
G/A 28782930 missense_variant p.Asp173Asn
C/T 28782952 missense_variant p.Ala180Val
A/G 28782965 synonymous_variant p.Gly184Gly
A/G 28782986 synonymous_variant p.Val191Val
G/A 28782996 missense_variant p.Ala195Thr
A/C 28783008 splice_region_variant&synonymous_variant p.Arg199Arg
G/A 28783009 missense_variant&splice_region_variant p.Arg199Lys
T/C 28783028 downstream_gene_variant
T/G 28783074 downstream_gene_variant
A/C 28783078 downstream_gene_variant
T/G 28783085 downstream_gene_variant
A/G 28783103 downstream_gene_variant
C/G 28783125 missense_variant p.Leu201Val
T/C 28783154 synonymous_variant p.Ser210Ser
G/C 28783158 missense_variant p.Glu212Gln
G/A 28783193 synonymous_variant p.Lys223Lys
A/T 28783198 missense_variant p.Lys225Met
A/G 28783236 missense_variant p.Lys238Glu
A/C 28783244 missense_variant p.Leu240Phe
T/G 28783247 missense_variant p.His241Gln
G/T 28783249 missense_variant p.Gly242Val
T/C 28783262 synonymous_variant p.Ser246Ser
C/G 28783263 missense_variant p.Pro247Ala
A/T 28783268 missense_variant p.Glu248Asp
C/A 28783280 synonymous_variant p.Pro252Pro
G/C 28783281 missense_variant p.Gly253Arg
G/A 28783287 missense_variant p.Val255Ile
T/C,G 28783288 missense_variant p.Val255Ala
C/T 28783329 missense_variant p.His269Tyr
T/C 28783337 synonymous_variant p.Val271Val
G/T 28783353 missense_variant p.Val277Leu
G/A 28783368 missense_variant p.Glu282Lys
T/G 28783372 missense_variant p.Ile283Arg
A/C 28783373 synonymous_variant p.Ile283Ile
A/G 28783383 missense_variant p.Lys287Glu
A/C 28783392 missense_variant p.Lys290Gln
A/G 28783408 missense_variant p.Lys295Arg
G/A,* 28783413 missense_variant p.Glu297Lys
G/A 28783416 missense_variant p.Glu298Lys
A/G 28783419 missense_variant p.Ile299Val
G/A 28783434 missense_variant p.Asp304Asn
T/G 28783436 missense_variant p.Asp304Glu
G/A 28783451 synonymous_variant p.Gln309Gln
T/C 28783466 synonymous_variant p.Ala314Ala
C/A 28783544 synonymous_variant p.Ile340Ile
C/A 28783548 missense_variant p.Gln342Lys
C/T 28783553 synonymous_variant p.Tyr343Tyr
A/C 28783560 missense_variant p.Ile346Leu
C/A 28783586 synonymous_variant p.Ile354Ile
G/A 28783610 synonymous_variant p.Leu362Leu
T/A 28783615 missense_variant p.Val364Glu
G/T 28783670 missense_variant p.Leu382Phe
C/T 28783672 missense_variant p.Ser383Leu
G/T 28783695 missense_variant p.Ala391Ser
C/T 28783696 missense_variant p.Ala391Val
A/G 28783707 missense_variant p.Asn395Asp
C/T 28783709 synonymous_variant p.Asn395Asn
C/T 28783712 synonymous_variant p.Cys396Cys
G/A 28783715 missense_variant p.Met397Ile
G/A,* 28783718 synonymous_variant p.Lys398Lys
C/T 28783726 missense_variant p.Thr401Ile
A/G,T 28783730 synonymous_variant p.Gly402Gly
C/T 28783734 synonymous_variant p.Leu404Leu
G/C,A 28783740 missense_variant p.Glu406Lys
G/A 28783745 synonymous_variant p.Lys407Lys
A/T 28783756 missense_variant p.Lys411Met
G/T 28783757 missense_variant p.Lys411Asn
A/T,G 28783758 missense_variant p.Ile412Val
C/T 28783764 missense_variant p.His414Tyr
A/T 28783765 missense_variant p.His414Leu
T/A 28783766 missense_variant p.His414Gln
A/C,G 28783768 missense_variant p.Asp415Ala
A/G 28783771 missense_variant p.Glu416Gly
A/T 28783775 missense_variant p.Arg417Ser
A/T 28783786 missense_variant p.His421Leu
G/A 28783813 missense_variant p.Arg430Lys
G/A 28783835 synonymous_variant p.Pro437Pro
G/C 28783842 missense_variant p.Ala440Pro
A/C 28783851 synonymous_variant p.Arg443Arg
A/G 28783853 synonymous_variant p.Arg443Arg
C/A 28783869 missense_variant p.Gln449Lys
T/C 28783890 synonymous_variant p.Leu456Leu
A/C 28783916 stop_lost&splice_region_variant p.Ter464Cysext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16804.1
MAVTSPSQAYSYDVFLNFRGSDTRQGFTGYLYKALLDSGIHIFIDDEGIQSGKIITPELKEAIEKSRIAITVLSTNYASSSFCLDELEIILDCFKRKKLLVLPVFYKVPPSHVRHQLGSYGEALARLEEGLHHKMKNWKKALKEVANHSGFHFEDGYASSPIFVAQEIRNLLDVGDDDGANMIGIHGMGGVGKSALARRVLGMKEINLASEEQGISIIKNRLKRKKVLLILDDVDKHKQLHGIVGSPEWFGPGSVVIITTRDKQLLASHEVKRTHEVKELNEIDALKLLKFKAFKMEEIDPSYDEVLNQVVTYASGIPLALEVIGSNLFGKSVQEWESAIKQYKRIPNNKILEILKVSFDSLGVEEKSVFLDIACCFKGYKLSEIEEKLRALYDNCMKYHTGVLVEKSLIKISHDERVTFHDLIEDMGKRIDRQQSPREAGKRRRLWLQEDIIQVLKDKSVSE*


CDS Sequence:
>Vu_16804.1
ATGGCTGTAACATCACCTTCCCAAGCATACAGCTACGATGTGTTTCTCAATTTCAGAGGCTCAGACACACGCCAAGGTTTTACTGGCTATCTCTACAAAGCTCTACTTGACAGTGGAATCCACATTTTCATTGATGATGAGGGCATTCAGAGTGGAAAGATAATAACACCAGAACTCAAGGAGGCAATTGAAAAGTCCAGGATTGCCATCACTGTGCTCTCTACAAACTATGCTTCTTCTTCCTTCTGTTTAGATGAACTTGAAATAATTCTTGACTGCTTCAAAAGGAAAAAACTCTTGGTGTTGCCTGTCTTTTACAAGGTGCCTCCTTCTCATGTCAGACACCAGCTAGGAAGTTATGGAGAAGCATTGGCCAGACTAGAGGAAGGGCTCCACCATAAAATGAAGAATTGGAAGAAGGCGCTGAAAGAAGTAGCTAACCATTCTGGCTTTCATTTCGAGGATGGGTATGCCTCTTCACCAATCTTTGTAGCACAAGAAATAAGAAACCTTTTGGATGTTGGAGATGATGATGGTGCCAACATGATAGGAATCCACGGAATGGGCGGTGTAGGGAAATCAGCACTTGCCCGCAGAGTACTTGGAATGAAGGAAATCAACTTAGCAAGTGAGGAACAAGGAATTTCAATAATAAAAAATAGGCTCAAGCGAAAGAAGGTTCTCTTAATTCTGGATGATGTAGACAAGCACAAGCAATTACATGGAATTGTTGGAAGTCCTGAATGGTTTGGTCCCGGCAGCGTAGTCATCATCACCACTCGGGACAAACAACTTCTAGCATCTCATGAGGTTAAAAGAACACATGAGGTGAAGGAATTGAATGAGATAGATGCTCTTAAGTTGCTTAAATTTAAAGCTTTTAAAATGGAAGAAATTGATCCAAGTTACGATGAGGTATTGAATCAGGTAGTAACTTATGCTTCCGGTATTCCACTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTTCAAGAATGGGAATCTGCTATCAAACAATACAAAAGAATTCCTAATAATAAAATCCTAGAGATCCTTAAAGTAAGCTTTGATTCATTGGGAGTAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATTGTCAGAGATTGAAGAGAAACTTCGTGCTCTTTATGATAACTGCATGAAGTACCATACTGGAGTGCTAGTTGAAAAGTCTCTCATAAAGATTAGTCATGATGAAAGAGTCACATTTCATGACTTGATTGAGGACATGGGTAAAAGAATTGACCGTCAACAATCACCGAGAGAGGCAGGGAAGAGAAGGAGATTATGGTTACAGGAAGATATTATTCAAGTTTTGAAAGACAAATCGGTGAGTGAGTGA


Promoter Sequence:
>Vu_16804::LG4:28780147-28782147(+)
TGTTGGGAGAGAAAGTTTAGTTGTTGTGCATAGTGTACAAGATTTTGGATACTTGGAGTTAGCTTGTTGTTTTTGCAAAAGGAAGTGGATCACTCATTATACAAATGTTGAAAGGGTTCCTAGCTTTAAAGTTGGGCATTATGTTAGGTTTCAAACTGGTTTGGTTGAACCAAGGTGGGCTGGAGAAGAGCTCAGTCTGAATCTCAAGGGGTTATAACTAGTATTCATGTTGATGGAGAAGTCATGGTCGCATTTTTTGGTCTTCCAGAATTGTCGATAGGAGATCCTTCAGAACTTGATATTGAACAAATGTTTGAAGTGGAAGAGTGGGTGAGGTTGCCAAAAAAATGCAAATAATTGGAAATCAATTGGACCAGGTAGTGTTGGTGTTGTTCCAATAATAGGGTATGAAGGAGATGAATCGGACAAAGCAAAATACAAGTCGGCAAAAGCAAAGAATAAGTCCGCCAGCATTACTGAGAAGTTGTCCACAATGAAAAACAAGTTGGTCATGAACCCAATTGTTACTGTTAATTAAAGGAGTCATTTTGACATGGGTTGATGCAGGAAGAAAGATGAAAGAAAGAAAAATTTAAGTTTATGGAGGAGTTTTGTAGGAATAAACTTTAGATATTTAGGAAAGGTATATCATTAAATCGAATCTGACAAAACAGAGGAAACTGAAAATAAAATCTTAAACTGTTAAAGTATTTAGAAAAGTCCCCGACAAAAACAGAGGCCTTCTGTCCATGTCTTAATACTTGAAATTTGTATGGTCAAGGTTAGCAAGAATTTTAACGTTAAATCATTAGAGAAGGTAAAACTAACTCCAAGAAAAATTATGAAGTAAAATGCATACAAATTTCTGTGCGAAACTTTTGGAAAAAAAATTCTCTCTTTCTAATTTGCTTTACTTTTGATCAATCCTGACCATTGTCATTCATTTCATAAAGATTATACACTGCAAAATCACATAATTAACTTAGTTGGTTGTTTTCCTTTATTTTCACATCTTAATTGGAAATGTGTAGTGATATTTTTGACAACTATATTTCCTGCAACATAAAAATTTGTTTCTGCATCAGTGGTATGCTAAGACTAATTGTGAATTTTTCTCACATTTATCATATACCTTTTTTTTCTCAATCACAGTCTCTTTTCTCGCGTGTATTCTAATGGCTATCAGTTTGCCATTTCATGATTCATGATTAATTTTCAGTCAATTTAAAAGTTAATTATGATTTTTTTTCCCCAATTTTATTCCGTGCCAAAGTGCAACGTCTTTGCCTTCTGCATCCATTGCCAATTTTGTGCAATAAACTATAACAGTATAAACAAGTATACATACATTGCTTTTACTGTTACTTAATATAGATTTTTTGTAATGAAAACAATGAAACCAAGTTAACAAAAAAGGGAAGTCAAATATAAATGATTAATTCATATTCTTTTCCGTATTAATAAAAACAGAATAAATAAATAAAGTATAAGTATATTTTTGCTGTAATTTTTAGTTGTTGTGCTTTTAGATATTAAAGTGAAATGGTTTTAATTTCAATAAACTATTATCTTATCAAAAAATCATTATTGTTCATTTTCATTTTTCATAATACAATAATCTTATAATAGTCATAACATAAGGGATTTGTGAATGTATTCTTGAAAACTCCGTCCTTGCAGGATCTTGACATTGGACCATTAACTCAGGAAGGTGGGAATTATTTTTTAAACTAAACATGGCTCCAATGTTACATAGTTATGTAATAAATAAGTGAATATTTATTGAAGTTTTCTCCAAGATAGTGTTAATAACTAAACTAAGCACGGCTCCAGCTTGTTACATAGTCATGTAATAAATAAGCGAATATTCATTGAAGTTTCGGCCAGGAGTGTTAATATATAAACTAAACATAGCTCCAATGTTACATAGTTATGTAATATATAAGTGCATATTCATTGAAGTTTGGTTCAAGAGTGTTAATAAGTAAACTTTCTTCTTA


Gene Sequence:
>Vu_16804(+)
ATGGCTGTAACATCACCTTCCCAAGCATACAGCTACGATGTGTTTCTCAATTTCAGAGGCTCAGACACACGCCAAGGTTTTACTGGCTATCTCTACAAAGCTCTACTTGACAGTGGAATCCACATTTTCATTGATGATGAGGGCATTCAGAGTGGAAAGATAATAACACCAGAACTCAAGGAGGCAATTGAAAAGTCCAGGATTGCCATCACTGTGCTCTCTACAAACTATGCTTCTTCTTCCTTCTGTTTAGATGAACTTGAAATAATTCTTGACTGCTTCAAAAGGAAAAAACTCTTGGTGTTGCCTGTCTTTTACAAGGTGCCTCCTTCTCATGTCAGACACCAGCTAGGAAGTTATGGAGAAGCATTGGCCAGACTAGAGGAAGGGCTCCACCATAAAATGAAGAATTGGAAGAAGGCGCTGAAAGAAGTAGCTAACCATTCTGGCTTTCATTTCGAGGATGGGTATGCCTCTTCACCAATCTTTGTAGTTTCTGTTGGATTAAATTTTATTTTTCATTAGATTGGACTCTTTGAAATTCTAAGAGAACATATTTTTTTGGTTGACGTGTGTGTCAAGACATTGATGGATACAACACAAGGCTTTAAGTTTGACTTGGTTGAACTTTTTGTTTGAAGCAGAAAAGAATATGAGCACAAGCTTATTAAGAAGATTGTTGAGCGTGTCTTCAGCGTTATTAGTAATGTTGAAGAAAGATTGCATGTTGCAGATTACCCAGTTGGACTAGAGTCACAGGCACAAGAAATAAGAAACCTTTTGGATGTTGGAGATGATGATGGTGCCAACATGATAGGAATCCACGGAATGGGCGGTGTAGGGAAATCAGCACTTGCCCGCAGAGTTTATAATTTGATTACTCATCAATTTGAAGGTTCGTGTTTTCTTCAAAATGTAAGAGAAGAATCAAACAAACATGGGTTAAAACACCTTCAAAGCATCATTCTTTCACAGGTACTTGGAATGAAGGAAATCAACTTAGCAAGTGAGGAACAAGGAATTTCAATAATAAAAAATAGGCTCAAGCGAAAGAAGGTTCTCTTAATTCTGGATGATGTAGACAAGCACAAGCAATTACATGGAATTGTTGGAAGTCCTGAATGGTTTGGTCCCGGCAGCGTAGTCATCATCACCACTCGGGACAAACAACTTCTAGCATCTCATGAGGTTAAAAGAACACATGAGGTGAAGGAATTGAATGAGATAGATGCTCTTAAGTTGCTTAAATTTAAAGCTTTTAAAATGGAAGAAATTGATCCAAGTTACGATGAGGTATTGAATCAGGTAGTAACTTATGCTTCCGGTATTCCACTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTTCAAGAATGGGAATCTGCTATCAAACAATACAAAAGAATTCCTAATAATAAAATCCTAGAGATCCTTAAAGTAAGCTTTGATTCATTGGGAGTAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATTGTCAGAGATTGAAGAGAAACTTCGTGCTCTTTATGATAACTGCATGAAGTACCATACTGGAGTGCTAGTTGAAAAGTCTCTCATAAAGATTAGTCATGATGAAAGAGTCACATTTCATGACTTGATTGAGGACATGGGTAAAAGAATTGACCGTCAACAATCACCGAGAGAGGCAGGGAAGAGAAGGAGATTATGGTTACAGGAAGATATTATTCAAGTTTTGAAAGACAAATCGGTGAGTGAGTGA