Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16801 LG4 28756582 28758563 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108344036
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 28756582 splice_region_variant&synonymous_variant p.???484???
T/C 28756583 splice_region_variant&synonymous_variant p.Leu483Leu
G/C 28756587 missense_variant p.Ser482Cys
C/T 28756593 stop_retained_variant p.Ter480Ter
T/A 28756619 missense_variant p.Arg471Ser
A/G 28756626 missense_variant p.Ile469Thr
A/T 28756649 missense_variant p.Ser461Arg
T/A 28756654 missense_variant p.Asn460Tyr
G/A 28756655 synonymous_variant p.Leu459Leu
C/T 28756659 missense_variant&splice_region_variant p.Gly458Asp
T/C 28756661 splice_acceptor_variant&intron_variant
C/T 28756662 splice_region_variant&intron_variant
A/T,* 28756665 splice_region_variant&intron_variant
A/C 28756668 upstream_gene_variant
A/T 28756670 upstream_gene_variant
A/C 28756672 upstream_gene_variant
C/T 28756676 upstream_gene_variant
C/A 28756683 upstream_gene_variant
T/C 28756685 upstream_gene_variant
C/A,* 28756696 upstream_gene_variant
G/C 28756716 upstream_gene_variant
A/G 28756721 upstream_gene_variant
C/T 28756730 splice_donor_variant&intron_variant
G/A 28756734 missense_variant p.His457Tyr
A/G 28756748 missense_variant p.Phe452Ser
A/T 28756751 missense_variant p.Leu451His
T/A 28756760 missense_variant p.Gln448Leu
T/C 28756769 missense_variant p.Glu445Gly
A/T 28756771 missense_variant p.Phe444Leu
C/T 28756778 missense_variant p.Arg442Lys
G/A 28756793 missense_variant p.Thr437Met
C/T 28756796 missense_variant p.Cys436Tyr
C/T 28756803 missense_variant p.Gly434Ser
T/A 28756810 missense_variant p.Arg431Ser
T/C 28756848 missense_variant p.Ile419Val
A/T 28756850 missense_variant p.Phe418Tyr
G/T 28756853 missense_variant p.Ala417Asp
G/C 28756870 synonymous_variant p.Thr411Thr
G/A 28756871 missense_variant p.Thr411Ile
G/C 28756878 missense_variant p.Leu409Val
T/C 28756881 missense_variant p.Ile408Val
C/G,T 28756889 missense_variant p.Cys405Ser
T/C 28756902 missense_variant p.Thr401Ala
C/T 28756977 missense_variant p.Ala376Thr
A/G 28756990 synonymous_variant p.Phe371Phe
A/G 28756992 missense_variant p.Phe371Leu
T/C 28757023 splice_region_variant&intron_variant
A/G 28757044 upstream_gene_variant
G/T 28757047 intron_variant
A/T 28757069 intron_variant
A/T 28757071 intron_variant
C/A 28757078 intron_variant
T/A 28757085 intron_variant
A/C 28757090 intron_variant
T/C 28757129 intron_variant
C/G 28757152 intron_variant
T/C 28757156 intron_variant
T/A 28757164 intron_variant
A/C 28757169 intron_variant
A/T 28757170 intron_variant
T/A 28757176 intron_variant
A/C 28757177 intron_variant
T/C 28757180 intron_variant
G/A 28757195 intron_variant
T/G 28757202 intron_variant
A/T 28757214 intron_variant
C/G 28757227 splice_region_variant&intron_variant
G/A 28757232 splice_region_variant&synonymous_variant p.Asp361Asp
C/A 28757238 missense_variant p.Glu359Asp
C/T 28757240 missense_variant p.Glu359Lys
G/T 28757241 missense_variant p.Asn358Lys
T/A 28757243 missense_variant p.Asn358Tyr
G/T 28757250 missense_variant p.His355Gln
T/C 28757251 missense_variant p.His355Arg
G/C 28757262 missense_variant p.Ile351Met
T/G 28757288 missense_variant p.Asn343His
T/C 28757294 missense_variant p.Asn341Asp
T/C 28757296 missense_variant p.Gln340Arg
A/G 28757302 missense_variant p.Ile338Thr
C/T 28757311 missense_variant p.Arg335His
T/C 28757326 missense_variant p.Gln330Arg
C/T 28757339 missense_variant p.Ala326Thr
C/T 28757357 missense_variant p.Asp320Asn
A/T 28757376 stop_gained p.Cys313*
G/A,C 28757383 missense_variant p.Ser311Leu
T/G 28757393 missense_variant p.Lys308Gln
C/A 28757403 missense_variant p.Met304Ile
T/A 28757428 missense_variant p.Asp296Val
A/C 28757449 missense_variant p.Leu289Trp
C/T 28757452 missense_variant p.Gly288Glu
A/C 28757460 missense_variant p.Asn285Lys
T/C 28757462 missense_variant p.Asn285Asp
G/T,A 28757464 missense_variant p.Thr284Ile
T/A 28757470 missense_variant p.Tyr282Phe
A/T 28757471 missense_variant p.Tyr282Asn
A/T 28757473 missense_variant p.Phe281Tyr
C/A,T 28757477 missense_variant p.Asp280Tyr
T/C,G 28757479 missense_variant p.Tyr279Cys
C/T 28757481 synonymous_variant p.Leu278Leu
A/G 28757483 synonymous_variant p.Leu278Leu
T/C,* 28757493 synonymous_variant p.Lys274Lys
C/G,* 28757502 missense_variant p.Leu271Phe
A/T 28757504 missense_variant p.Leu271Met
G/C 28757509 missense_variant p.Pro269Arg
T/A 28757521 missense_variant p.Asn265Ile
G/C 28757536 missense_variant p.Ser260Cys
T/C 28757542 missense_variant p.Glu258Gly
C/G 28757543 missense_variant p.Glu258Gln
A/G 28757565 synonymous_variant p.Phe250Phe
G/A,* 28757600 missense_variant p.His239Tyr
T/C 28757605 missense_variant p.Lys237Arg
T/C 28757606 missense_variant p.Lys237Glu
T/A 28757610 missense_variant p.Glu235Asp
A/T 28757614 missense_variant p.Met234Lys
C/T 28757623 missense_variant p.Gly231Glu
G/A 28757636 synonymous_variant p.Leu227Leu
T/A 28757668 missense_variant p.Tyr216Phe
A/G 28757703 synonymous_variant p.Leu204Leu
C/T 28757716 missense_variant p.Ser200Asn
C/T 28757718 synonymous_variant p.Val199Val
C/T 28757720 missense_variant p.Val199Met
T/G 28757726 missense_variant p.Lys197Gln
T/A 28757728 missense_variant p.Asn196Ile
C/T 28757734 missense_variant p.Arg194His
A/T 28757766 missense_variant p.Phe183Leu
C/T 28757797 missense_variant p.Ser173Asn
C/G 28757806 missense_variant p.Arg170Thr
T/C 28757807 missense_variant p.Arg170Gly
G/T 28757808 missense_variant p.His169Gln
G/T 28757810 missense_variant p.His169Asn
T/C 28757830 missense_variant p.Asn162Ser
C/A 28757840 missense_variant p.Asp159Tyr
T/C 28757846 missense_variant p.Met157Val
C/T 28757849 missense_variant p.Asp156Asn
T/G 28757859 synonymous_variant p.Thr152Thr
T/C 28757862 synonymous_variant p.Leu151Leu
C/G 28757874 missense_variant p.Trp147Cys
C/A 28757875 missense_variant p.Trp147Leu
G/T 28757877 missense_variant p.Asp146Glu
C/T 28757879 missense_variant p.Asp146Asn
T/C 28757884 missense_variant p.Asn144Ser
C/A 28757886 missense_variant p.Leu143Phe
G/T 28757893 missense_variant p.Thr141Asn
C/G 28757903 missense_variant p.Glu138Gln
A/G 28757914 splice_region_variant&intron_variant
G/A 28757940 intron_variant
A/G 28757961 intron_variant
G/C 28757970 intron_variant
T/A 28757972 intron_variant
A/G 28757974 intron_variant
T/C 28758003 synonymous_variant p.Ser133Ser
C/G 28758017 missense_variant p.Gly129Arg
A/C 28758030 synonymous_variant p.Pro124Pro
G/T 28758043 missense_variant p.Thr120Lys
C/T 28758123 synonymous_variant p.Pro93Pro
A/G 28758201 synonymous_variant p.Asn67Asn
T/C 28758269 missense_variant p.Lys45Glu
C/G 28758293 intron_variant
C/A 28758309 intron_variant
G/C 28758320 intron_variant
G/A 28758344 intron_variant
A/G 28758358 intron_variant
G/A 28758371 intron_variant
C/A 28758383 intron_variant
G/A 28758384 intron_variant
A/C 28758387 intron_variant
C/T 28758393 intron_variant
A/C 28758403 intron_variant
A/G 28758411 intron_variant
G/C 28758419 intron_variant
A/T 28758423 intron_variant
A/C 28758424 intron_variant
C/T 28758432 intron_variant
T/C 28758436 splice_region_variant&intron_variant
G/C 28758449 missense_variant p.His39Asp
T/C 28758471 synonymous_variant p.Lys31Lys
T/G 28758496 missense_variant p.Lys23Thr
T/C 28758519 synonymous_variant p.Gln15Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16801.1
MHDLIEDMGRHIEWQKSPEEPGKRRRLWLGKDILHVLKHNEGTSKTEIICLDLSISEKEETLEWNANAFRRMENLKILIIRNGKFSKGPNYFPKSLRVLEWHGYPSNCLPSNFDPNKLVTCMLPNSHFGFLGSSKKFENLTVLNFDWCKFLTQTPDMSDLGNLEEVSFHRCESLVAVHDSIGFMSKLKILHAERCNKLVSFPPLNLPTLESLELSYCSNLEKFPEILGKMGNIMELKLHDLPIKELPLSFQNLIGLEELSLSCENVHLPSLVAKLPNLYDFYVTNCKGLQWVKSEDAEDNVGSMVPSKLDSFCALSCNLDDNFFSAGFMQLAQVRSLILQNNNFKHLPECIKEFHNLNELDELYETTKSMFRFPGASFPKWFDLKSSGPSCSFWFRNKFPTRVLCLLILHTDKDKFAFIAPHVYINGKFQRGGGFCTKKEERMFEFDQTYLFDLQRHDASIVKATGIHVFKEENMEDIRFDGP*


CDS Sequence:
>Vu_16801.1
ATGCACGACTTGATTGAGGACATGGGTAGACATATTGAATGGCAAAAGTCACCCGAAGAGCCAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCCTTCATGTTTTAAAACACAACGAGGGAACTAGCAAAACTGAAATCATATGCCTGGATTTGTCTATATCTGAGAAAGAAGAAACGCTAGAATGGAATGCCAATGCCTTCAGAAGGATGGAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCGAAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAACAAACTTGTGACATGCATGTTACCTAACAGTCATTTTGGATTCCTTGGCTCATCAAAGAAGTTCGAGAATCTAACTGTCTTGAATTTTGACTGGTGCAAATTTTTAACACAGACACCCGATATGTCTGATCTCGGAAATTTGGAGGAAGTTTCATTTCACAGGTGTGAGAGTTTAGTTGCAGTTCACGACTCAATTGGTTTTATGAGTAAACTTAAAATATTGCATGCGGAACGTTGCAACAAGCTTGTGAGTTTTCCACCTCTTAACTTGCCCACTCTTGAAAGCCTAGAACTTTCATATTGTTCCAATCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAATGGAACTTAAATTGCACGACCTTCCCATTAAAGAATTGCCACTGTCGTTTCAAAATCTTATTGGACTCGAAGAGTTATCCTTGTCATGTGAAAATGTTCACTTACCAAGTTTGGTTGCCAAACTGCCTAACTTGTATGATTTTTATGTTACTAATTGCAAGGGGTTGCAATGGGTAAAATCAGAAGATGCTGAAGATAACGTAGGCTCAATGGTTCCTTCAAAGTTAGATTCGTTTTGTGCCCTCTCTTGCAACCTGGATGATAACTTCTTTTCAGCAGGTTTCATGCAGTTGGCACAAGTGCGTTCTTTAATTCTACAGAACAATAATTTCAAACACCTTCCTGAATGCATCAAAGAATTTCACAACCTCAACGAGCTTGACGAACTATACGAAACTACAAAATCTATGTTTAGGTTTCCAGGAGCAAGTTTTCCAAAGTGGTTTGATCTCAAGAGCAGTGGACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCCTACCAGAGTTCTTTGTCTTCTAATTCTACATACCGATAAAGATAAGTTTGCTTTCATTGCACCACATGTGTACATTAATGGGAAATTTCAAAGAGGCGGAGGCTTCTGTACGAAGAAAGAGGAGAGGATGTTTGAATTCGATCAAACATACCTCTTTGATCTACAAAGGCATGATGCCTCAATAGTTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACATGGAAGACATTCGGTTTGATGGTCCTTAA


Promoter Sequence:
>Vu_16801::LG4:28758563-28760563(-)
ACTTTTAAGAGAAAATAGAGGAAAGAAAGAGGAAAGTTTCACTGGTAATCTCTACGAAGCTATCTGTGACAAACTATGCTTTCATGGATGATGACAAACCTAAAAGCGGAGAGGAAATCACACCAGCACTTCAGAAAGCAATTATACTTTATAATAAATTTATGCTTCATTATGTGTAAATTTAAACACTTTATCATGGGAAATTTCTAAGAACTAAAAACTTGATGAAGACCTGTCCAACATAGAGAAGAGGTTATGCATATGTTGACTTTTGATGGAAATTTCCAAAAGTTTGACGCGCTTTAACTTACAACAGGACCCAGATAATTACTGTTTGGCACTTGATTCTGCATTACCTTACATTTCACTCTTCTAATTTCATGTTTATATAAAGTTTGATTCCATTTACAGTCTAACTCGCTAACAATTATCATTCCAGACTTTGTTCTAATGGCAACTCCAAGTTCCTGTAGATTCACTTACGATGTGTTCCTCAGCTTTAGAGGGAAAGACACGCGTTATGGTTTCACTGGTAATCTCTACAAAGCTCTTTGTGACAGGGGAATTCACACTTTCATGGATGATGACAAACTTCAAAGCGGGGAGGAAATCACACCAGTGCTTCTGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGAATGAACTTGCAAGCATCCTTCACTGCCAGAGTAAAGGTCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTTTTATGTCAGACATCAGAAAGGTAACTATGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGCGCAGGAGGAGAAGTTACATAAATGGAAAATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTATCACCTCGGAGATGGGTACCCAATCTTTTTGTTTTATTGAAAATTATAGTATACTTATCAAGACATGTTTACAATGCTTCTAGTTTAGCGTAGTTAAACTTTAATGTTTGGAACAGGTATGAATACCAGTACAAGTTTATTGGGAGCATTGTTGAACGGGTTTCCAGGGTGATTAATCGTGCTCCTTTACATGTTGCGGCTTACCCAGTTGGCCTACCGTCACAGGTGCTGAAAGTCAAGAAACTTTTGGATCTTGGATCGAATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTCCATTGCTGATGATTTTGATAGTTCATGTTTTCTTCAAAATGTAAGAGAAGAATCAAATAAACATGGATTAAAACACCTCCAGACCGTCCTTCTTTCAGAAATACTAGGTGAGAAGGACATCAACTTAGCAAGTGAGCAAAGAGGAATTTCATTGATACAGCAAAGGCTTGGTAAAAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACAGAAAGCAGTTACAAGCATTTGCTGGAAGATCTGATTGGTTTGGTCCCGGCAGCAGAGTTATCATTACCACTCGCGACGAACAACTGCTAAAATCTCATGAGATTGAAAGAACTTATGAGATGGAGGAAATGAATGAGAATGATTCTCTTCAATTGCTTGTATGGAATGCTTTCAAAAGGGAAAAAGTTGATCCAAGATACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCTAACGGTCAAATTCTAGAAATACTTAAAGTAAGTTTTGATGCTTTGGGGGAAGAAGAAAAAAATGTCTTTCTTGACATCGCCTGTTTCTTTAAAGGAAGTAGTTTGGAAGAAGTTGAACATATACTTGGTATTCTTTATGATAACAACATGAAACATCATATTCGGGTGTTGGTTGAAAAATCTCTCATAAAGGTTTGGGATGGAATTCAA


Gene Sequence:
>Vu_16801(-)
ATGCACGACTTGATTGAGGACATGGGTAGACATATTGAATGGCAAAAGTCACCCGAAGAGCCAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCCTTCATGTTTTAAAACACAACGAGGTAAATAAGCTTCATCTTTGACTGATATGTTTTCTTATCTTGATTTAGTATTTTTACGTCATCTGTTCACATCATAGTATTTTTTTTTTCTCTTAACAATTTGCAAAGTTCTCTTAACACCTGAATTTTTTGGATTCGTGAATGTGAGTTTTGCATTAACAGGGAACTAGCAAAACTGAAATCATATGCCTGGATTTGTCTATATCTGAGAAAGAAGAAACGCTAGAATGGAATGCCAATGCCTTCAGAAGGATGGAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCGAAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAACAAACTTGTGACATGCATGTTACCTAACAGTCATTTTGGATTCCTTGGCTCATCAAAGGTAAGCTTAAAGAGTGTTTTCCTCATCTTGTAAATTATTAAAAACAACATAAATATCTTAACTTTTTTCTCTTTATTTTCTTTGCAGAAGTTCGAGAATCTAACTGTCTTGAATTTTGACTGGTGCAAATTTTTAACACAGACACCCGATATGTCTGATCTCGGAAATTTGGAGGAAGTTTCATTTCACAGGTGTGAGAGTTTAGTTGCAGTTCACGACTCAATTGGTTTTATGAGTAAACTTAAAATATTGCATGCGGAACGTTGCAACAAGCTTGTGAGTTTTCCACCTCTTAACTTGCCCACTCTTGAAAGCCTAGAACTTTCATATTGTTCCAATCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAATGGAACTTAAATTGCACGACCTTCCCATTAAAGAATTGCCACTGTCGTTTCAAAATCTTATTGGACTCGAAGAGTTATCCTTGTCATGTGAAAATGTTCACTTACCAAGTTTGGTTGCCAAACTGCCTAACTTGTATGATTTTTATGTTACTAATTGCAAGGGGTTGCAATGGGTAAAATCAGAAGATGCTGAAGATAACGTAGGCTCAATGGTTCCTTCAAAGTTAGATTCGTTTTGTGCCCTCTCTTGCAACCTGGATGATAACTTCTTTTCAGCAGGTTTCATGCAGTTGGCACAAGTGCGTTCTTTAATTCTACAGAACAATAATTTCAAACACCTTCCTGAATGCATCAAAGAATTTCACAACCTCAACGAGCTTGACGTGAGTCATTGCAAACATCTTGAGGAAATAAGAGGGCTTCCACCAAAATTAAAATATTTCATTGCAAAAAACTGTATATGTTTGACTTCCACCAGCTTAGACATGTTGCTAAATAAGGTTTTGTCTTGCTTTTGAATTTTTTATTAATAATAGGTAGTGCTCTTAATGTTGGTAAGCTAATGAGCTCTTTATGAATTATGTATGACTAACAGGAACTATACGAAACTACAAAATCTATGTTTAGGTTTCCAGGAGCAAGTTTTCCAAAGTGGTTTGATCTCAAGAGCAGTGGACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCCTACCAGAGTTCTTTGTCTTCTAATTCTACATACCGATAAAGATAAGTTTGCTTTCATTGCACCACATGTGTACATTAATGGGAAATTTCAAAGAGGCGGAGGCTTCTGTACGAAGAAAGAGGAGAGGATGTTTGAATTCGATCAAACATACCTCTTTGATCTACAAAGGCATGGTAATTTGTTTGAACAACCTTTAGAAAAGGAATGGAATCATGTGAAGGTTACATGTAATTTTTTTTTAGATGCCTCAATAGTTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACATGGAAGACATTCGGTTTGATGGTCCTTAA