Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16773 LG4 28484062 28487434 PREDICTED: TMV resistance protein N-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 28484128 upstream_gene_variant
A/T 28484206 upstream_gene_variant
T/A 28484242 upstream_gene_variant
G/A 28484306 synonymous_variant p.Gly31Gly
G/A 28484322 missense_variant p.Ala37Thr
G/A 28484327 synonymous_variant p.Val38Val
G/T 28484341 missense_variant p.Trp43Leu
C/T 28484351 synonymous_variant p.Thr46Thr
A/T 28484447 synonymous_variant p.Gly78Gly
A/G 28484452 missense_variant p.Glu80Gly
T/C 28484464 missense_variant p.Leu84Ser
G/T 28484465 missense_variant p.Leu84Phe
T/C 28484488 missense_variant p.Leu92Ser
G/T 28484527 stop_lost p.Ter105Leuext*?
G/A 28484531 synonymous_variant p.Glu106Glu
T/G 28484546 missense_variant p.Asn111Lys
A/C 28484555 stop_lost p.Ter114Tyrext*?
G/A 28484581 missense_variant p.Arg123Gln
C/G 28484587 missense_variant p.Ser125Cys
A/T 28484590 stop_lost p.Ter126Leuext*?
C/G 28484594 missense_variant p.Asp127Glu
C/T 28484608 missense_variant p.Ser132Phe
G/T 28484665 missense_variant p.Arg151Met
T/A 28484839 missense_variant p.Met209Lys
A/C 28484865 missense_variant p.Ile218Leu
G/T 28484875 missense_variant p.Gly221Val
A/G 28484877 missense_variant p.Lys222Glu
C/G 28484897 missense_variant p.Ile228Met
G/T 28484908 missense_variant p.Cys232Phe
G/A 28484987 stop_retained_variant p.Ter258Ter
T/C,* 28485061 missense_variant p.Val283Ala
A/G 28485277 missense_variant p.Lys355Arg
G/A 28485299 synonymous_variant p.Leu362Leu
C/A 28485380 upstream_gene_variant
G/C 28485383 upstream_gene_variant
A/G 28485446 upstream_gene_variant
T/C 28485494 upstream_gene_variant
C/T 28485609 missense_variant p.His406Tyr
G/A 28485619 missense_variant p.Arg409Lys
G/A 28485670 missense_variant p.Gly426Asp
G/A 28485876 upstream_gene_variant
C/G 28485900 upstream_gene_variant
C/G 28485919 upstream_gene_variant
A/G 28486050 synonymous_variant p.Arg519Arg
T/A 28486140 synonymous_variant p.Pro549Pro
C/A 28486141 missense_variant p.Leu550Ile
T/G 28486188 missense_variant p.Ser565Arg
G/T 28486353 synonymous_variant p.Thr620Thr
A/C 28486410 synonymous_variant p.Ser639Ser
A/T 28486415 missense_variant p.Glu641Val
G/T 28486433 missense_variant p.Gly647Val
G/A 28486539 synonymous_variant p.Leu682Leu
A/G 28486563 synonymous_variant p.Thr690Thr
T/A 28486568 missense_variant p.Leu692His
A/G 28486656 synonymous_variant p.Pro721Pro
A/T 28486663 stop_gained p.Lys724*
T/A 28486732 splice_region_variant&intron_variant
T/G 28486733 splice_region_variant&intron_variant
G/T 28487059 missense_variant p.Met829Ile
C/T 28487170 synonymous_variant p.Ile866Ile
G/A 28487177 missense_variant p.Glu869Lys
A/G 28487179 synonymous_variant p.Glu869Glu
G/C 28487328 missense_variant p.Cys919Ser
G/T 28487330 stop_gained p.Glu920*
C/T 28487370 missense_variant p.Ser933Phe
T/A 28487373 missense_variant p.Phe934Tyr
G/T 28487393 missense_variant p.Val941Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16773.1
MALQQVADLSGYHFKHGNEYEHEFIGRIVERVSREISSVHLPVDDYLVGLESKVQEVKKLLDLGSHDGVVIGIHGMGGIGKTTLALAVYNLIAANFDESCFLQNVREESNKYGLKHLQSILLSKILRQKNIILTSWQEGASMIQQRLRRKKVLLILDDVDKIEQLKTFVGRCNWFGPGSRVIITTRDQHLLTSYDVKRTYVVNKLNYYDALQLLTWKNFKREKADPSYQEVLHRAVTYASGLPLALEVIGSNLVGKSVEEWDSAIEHYKRIPSDEILKILKVSFDTLGREEKNVFLDIACCLKGCKLTEIEHMLRALYDDSMKHHISVLVEKSLIKISQSSTVEMHDLIHAMGRQIDQHESPEEPGKHKRLWLPKDIIQVLKYNTGTGKIDIICLDISISKREETIHWNRNAFRKMKNLKILIIRNGKFSEGPNYFPESLRVLEWHGYPSNCLPSNFDPRKLVICKLPHSPFTSFGFHGSSKKLENLTVLNFDKCNYLTQIPNLSDLLNLEVLSFKKCGRLIVVHDSIGFLNKLKILKSKGCKKLRRFPPLNLTSLEQLELSYCSSLENFPEILGKMGNIRKLSLFELPIKNLPVSFHNLTGLQELEMSCDFVQLSSTVLTPELSDFRVHKGKGWQWVKSQEGEEKEGSMVSPKIHMFWVLSCNLNDDFFSASFKQLAQVSHLRLRESNVTFLPECIKEFHSLFSLDVNDCKHLQEIRGVPPNLKYFRAINCTSLTSTGSSMLLNQQLHEAGGTDFIFPGGSIPEWFHKQRKEPSISFWFRNKFPAKVLCLLIAPVLGDNVTGLVRYIMFINGRVRKQYLLHYLNRQVKMLESDYTHLFDLQHSHFSTDDDLMEEVSLEKEWNQVTITYEGLIESSLIKIIGIHVVKEENSSMEDIRYDDPYANTNEDNHLNTSQSQPFCERGLMLTCKFFIGSFMLFSCFVLLILSNLTNNPT*


CDS Sequence:
>Vu_16773.1
ATGGCTCTCCAACAAGTGGCTGATCTCTCTGGTTATCATTTCAAACATGGAAATGAATATGAACACGAGTTTATTGGGAGGATTGTTGAGCGGGTCTCTAGGGAGATTAGCAGTGTTCATTTACCTGTGGATGATTACCTAGTGGGACTAGAGTCAAAAGTCCAAGAGGTAAAGAAGCTTTTGGATTTAGGATCTCATGATGGTGTTGTGATAGGGATCCATGGAATGGGTGGGATAGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTGATTGCTGCTAATTTTGATGAATCGTGTTTTCTTCAAAATGTGAGAGAAGAATCAAACAAATATGGGCTAAAACACCTCCAAAGCATCCTTCTTTCGAAAATCCTAAGACAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGCAGAGGCTGAGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGATTGAGCAATTAAAGACATTTGTTGGCAGATGTAATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACCAACATCTTCTGACATCTTATGACGTTAAAAGAACTTATGTTGTGAATAAATTGAACTATTATGATGCTCTTCAATTACTAACATGGAAAAATTTTAAGAGGGAAAAGGCTGATCCAAGTTATCAGGAAGTTTTGCATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCCTTGGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGATTCTGCTATTGAACATTACAAAAGAATTCCTAGTGATGAAATCCTAAAGATACTTAAAGTAAGTTTTGATACTTTGGGAAGAGAAGAGAAAAATGTTTTTCTTGACATTGCCTGTTGCTTGAAAGGATGTAAATTGACAGAGATTGAACATATGCTTCGTGCTCTTTATGATGACAGCATGAAACATCATATTAGTGTGTTGGTTGAAAAATCTCTCATAAAGATTAGTCAGAGTAGTACGGTCGAAATGCACGACTTGATTCATGCTATGGGTAGACAAATTGACCAACATGAATCACCTGAAGAGCCAGGAAAACACAAGAGGCTATGGTTACCAAAAGATATAATTCAAGTTTTAAAATACAACACGGGAACTGGTAAAATTGATATCATCTGTCTAGATATCTCCATATCTAAGAGAGAAGAAACGATACACTGGAATAGAAATGCCTTCAGAAAGATGAAAAACCTTAAAATACTTATCATAAGAAATGGTAAATTTTCTGAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAGAAAACTTGTGATATGCAAGTTACCTCACAGTCCTTTTACGTCATTTGGGTTTCATGGTTCATCAAAGAAGTTGGAGAATCTAACCGTCTTGAATTTTGACAAGTGCAATTATTTAACGCAGATACCTAACTTGTCTGATCTCTTAAATTTGGAAGTACTTTCATTTAAAAAGTGTGGGAGATTAATAGTAGTTCACGACTCAATTGGTTTTCTGAATAAACTTAAAATATTGAAATCTAAAGGTTGCAAGAAGCTTAGGAGATTTCCACCTCTCAACTTGACCTCTCTTGAACAACTTGAACTTTCATATTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGGAAACATAAGGAAACTTAGTTTGTTTGAACTTCCCATAAAAAACTTGCCTGTTTCATTTCATAATCTTACTGGACTACAAGAATTAGAGATGAGCTGTGATTTTGTTCAGTTAAGTAGCACTGTCTTGACGCCTGAACTGTCTGATTTTAGAGTTCATAAAGGCAAGGGGTGGCAATGGGTAAAATCACAAGAGGGTGAAGAAAAAGAGGGTTCAATGGTATCTCCAAAGATACATATGTTTTGGGTTTTATCTTGCAACTTGAATGATGATTTTTTTTCAGCAAGTTTCAAGCAGTTAGCTCAAGTGAGTCATTTGAGGCTAAGGGAAAGTAATGTCACATTCCTTCCTGAATGCATCAAAGAATTTCACAGCCTATTTTCTCTCGATGTGAATGATTGCAAGCATCTTCAGGAAATTAGAGGGGTTCCACCAAACTTGAAATATTTCAGGGCAATAAACTGTACATCCTTGACTTCCACGGGTTCAAGCATGCTGTTAAATCAGCAGCTTCACGAGGCTGGAGGGACTGATTTTATCTTTCCAGGAGGAAGTATTCCAGAGTGGTTCCATAAACAGAGGAAGGAACCTTCAATTTCTTTCTGGTTTCGAAATAAATTCCCTGCCAAAGTTCTTTGTCTTCTTATTGCACCTGTACTGGGTGATAACGTGACAGGATTGGTTAGATACATTATGTTCATCAATGGCAGAGTTAGAAAACAATATTTGTTACATTATCTGAACAGACAAGTGAAGATGTTGGAATCAGATTATACACATCTCTTTGATCTACAACACTCACATTTCTCCACTGATGATGATCTGATGGAAGAAGTGTCTTTAGAAAAGGAATGGAATCAGGTGACGATCACATATGAAGGTTTGATAGAGAGTTCCCTCATTAAAATAATCGGAATCCATGTTGTAAAAGAGGAAAACAGCAGCATGGAGGACATTCGATATGATGATCCTTATGCAAACACAAATGAAGACAATCACCTCAACACTTCCCAATCACAACCCTTCTGTGAAAGAGGTTTAATGTTGACATGCAAGTTTTTTATAGGTTCCTTTATGTTGTTCTCTTGCTTTGTATTATTAATTTTATCTAACCTCACAAACAACCCAACCTGA


Promoter Sequence:
>Vu_16773::LG4:28482062-28484062(+)
CATATATAGTTTTTTTACATCAATGAAACTTACAAATGAGTTTTACATTGTTAATCAATTATGAAATAAATTATGATCTGTAAATAATTATTAAAAATTACCACAAAATCAATTTTGGTGCGTGAGATGTTTTTTACGGTAAGTATGTCCGAATTGAGGGTTGTGATTGGAGAAGTTGTTCGTAAAGAAAGATTGGTCAGAATGTCATGAAATAAGAGTTAGTCATATTGGAAATAAATTATTATTAGATAGATGGATCATGCAGTTTTTAATTGCAAAACAAAGTGCCTACTTAATCAACTTCTCTTTTTTGGAACTTTCCCGTTGAAATTTTAAAAATAATTAGAGACCAGAAATAATTCTTAAATAATCTAAGATCACTATGGAAATTGAACCAAATCACAAAAGCACGTCAGGAAGAGATTAATACGTAATTCATTCAGACAATATTAAAACAATATAAACACATCAATTTTATTCATGTTTTTAAAGATTGAATTGTTGGGAATTATAGGGCTCTTATTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATAAAAGTAAAAAAATATTAAATATTTACAATATCTTAATCTTAAATTTCTAAATAATAACTAATTTCTAAAAACTGGAAGATATTTTAAAATTTAAATATTTCCTAAAAACTAATTTAAACAAAAAAGATATTAAGTAAATATTTACAATATTTATCCTTGCTTAATATGTATTTATTTGAATTTTAGATCTTTAAATTTGATTTTCTTTTTGTCCATGATAATTTTGTCGGTCCCCCTTACTACTGAACTCTCAGATTCTTTCACAAAGGTTTGCAAAAGTTGCACAGTTTGGAGCAGAACACGAGATTGTAATCATCATCATATTCTTAAAACCACTGTCTAGTTAAATCATTAAAAGCATCAAACTTCCACACAGTGGACTCACTACATCTTGTAATACAATGCTACCTGATATGCATATCAAAAACAACTTCCTTTGAGAATTTTTTCTCCACAACAAGAAAAAAGAGAAAGCAGAGAGAAAAGGGTGAAAAGAACTGAGGGTTGGCTGGCTGCAGAAAAAAAAAGGAGAACTGCAAATAAAAGATAGATAAACTTCACGGTTTAGTAACTTGTTTACTCTGAATTACGTGGGTGTTGGGATTTTAGTAGCCTGAAAGATTCAATTTATGGTTCAATGTTTCTCTATTATAGACTTGTATAATTTATGCATAAAGGATAAGGTCAACGATTTTGGCCAATTCAATGAAATTTATATTGTTGTTAAATTATATACTACTTCAAAAGGTATAAGAGGACGTTTATTAATGTTGATTTTATAGCCGAAGGACGGTGGATCCAGAAGACTAATACATTTGAAAACAATTTTATGTTATTGATTGCAGTATCAAGCTTAGTTGAATTGGTTATTTTACGTTAATCAAAGTTTCAATTGAAACAAAGTGATCTTTCATTCTTGATTGATTCTGGAATCCATTCTCCATCCATACTCATAGTAGCCTTTCTTCTGGGTCCTCATGGCTTTGCGATCATGTTCCTCTTCCTTCATCTATGAGGTGTTTCTCAGTTTCAGAGGCGAAGACACACGTCACGGTTTCACTGGCAATCTCTACAAAGCCCTTGATGACAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAGAGCGGAGAGGAAATAACACCTGCTCTTTTGAATGCAATTGAAGAGTCCAGGATTGGCATCACTGTGCTCTCTAAAGACTATGCTTCCTCCTCGTTTTGCTTAGATGAACTTACAACCATCCTTGACTGCAGGACAAAAGGGCTGTTGGTCATACCAGTCTTTTATATGATGGACCCTTCAGATGTAAGACACCAGAAAGGTACTTATGGGGAAGCATTAGCTAAGCATCAGAAAAGATTCAAAGCTGAAAAGTTGCAGAAATGGAAGA


Gene Sequence:
>Vu_16773(+)
ATGGCTCTCCAACAAGTGGCTGATCTCTCTGGTTATCATTTCAAACATGGGTACTTGTCTTACTTTTCATACTACCTTGTAATTTATATATGTGGTTAGTTTTACTTGTCTAACGATTTAACTTGAAATTCTGAAAAGAAAAGAAATACTTGTTAACCTTGTCAATTGATATACGTATCATTTAACTTTTTGTTTGAACAGAAATGAATATGAACACGAGTTTATTGGGAGGATTGTTGAGCGGGTCTCTAGGGAGATTAGCAGTGTTCATTTACCTGTGGATGATTACCTAGTGGGACTAGAGTCAAAAGTCCAAGAGGTAAAGAAGCTTTTGGATTTAGGATCTCATGATGGTGTTGTGATAGGGATCCATGGAATGGGTGGGATAGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTGATTGCTGCTAATTTTGATGAATCGTGTTTTCTTCAAAATGTGAGAGAAGAATCAAACAAATATGGGCTAAAACACCTCCAAAGCATCCTTCTTTCGAAAATCCTAAGACAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGCAGAGGCTGAGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGATTGAGCAATTAAAGACATTTGTTGGCAGATGTAATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACCAACATCTTCTGACATCTTATGACGTTAAAAGAACTTATGTTGTGAATAAATTGAACTATTATGATGCTCTTCAATTACTAACATGGAAAAATTTTAAGAGGGAAAAGGCTGATCCAAGTTATCAGGAAGTTTTGCATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCCTTGGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGATTCTGCTATTGAACATTACAAAAGAATTCCTAGTGATGAAATCCTAAAGATACTTAAAGTAAGTTTTGATACTTTGGGAAGAGAAGAGAAAAATGTTTTTCTTGACATTGCCTGTTGCTTGAAAGGATGTAAATTGACAGAGATTGAACATATGCTTCGTGCTCTTTATGATGACAGCATGAAACATCATATTAGTGTGTTGGTTGAAAAATCTCTCATAAAGATTAGTCAGAGTAGTACGGTCGAAATGCACGACTTGATTCATGCTATGGGTAGACAAATTGACCAACATGAATCACCTGAAGAGCCAGGAAAACACAAGAGGCTATGGTTACCAAAAGATATAATTCAAGTTTTAAAATACAACACGGTAAGTGAGACTCATGGATTGTTTGTTTTGTTTCTCAAATTGATATGTCTTTTTCGTTTATCATATATTCATATCATAATTTTTCTTTTTCTTGACAATTTATAAATTTCTCTACACGTGAATTGATTACTTACATATAACTAATAACCTCTTGATTTGTGCCTCTTTGCATTAACAGGGAACTGGTAAAATTGATATCATCTGTCTAGATATCTCCATATCTAAGAGAGAAGAAACGATACACTGGAATAGAAATGCCTTCAGAAAGATGAAAAACCTTAAAATACTTATCATAAGAAATGGTAAATTTTCTGAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAGAAAACTTGTGATATGCAAGTTACCTCACAGTCCTTTTACGTCATTTGGGTTTCATGGTTCATCAAAGGCAAGTTTAGAGAATAAATTCTTTATCTTGTGAATTGATGAATACACTTCAAATGTATTCAATCGGTTCTTATGCCTTTTCTCCATTATTTTCTTTGCAGAAGTTGGAGAATCTAACCGTCTTGAATTTTGACAAGTGCAATTATTTAACGCAGATACCTAACTTGTCTGATCTCTTAAATTTGGAAGTACTTTCATTTAAAAAGTGTGGGAGATTAATAGTAGTTCACGACTCAATTGGTTTTCTGAATAAACTTAAAATATTGAAATCTAAAGGTTGCAAGAAGCTTAGGAGATTTCCACCTCTCAACTTGACCTCTCTTGAACAACTTGAACTTTCATATTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGGAAACATAAGGAAACTTAGTTTGTTTGAACTTCCCATAAAAAACTTGCCTGTTTCATTTCATAATCTTACTGGACTACAAGAATTAGAGATGAGCTGTGATTTTGTTCAGTTAAGTAGCACTGTCTTGACGCCTGAACTGTCTGATTTTAGAGTTCATAAAGGCAAGGGGTGGCAATGGGTAAAATCACAAGAGGGTGAAGAAAAAGAGGGTTCAATGGTATCTCCAAAGATACATATGTTTTGGGTTTTATCTTGCAACTTGAATGATGATTTTTTTTCAGCAAGTTTCAAGCAGTTAGCTCAAGTGAGTCATTTGAGGCTAAGGGAAAGTAATGTCACATTCCTTCCTGAATGCATCAAAGAATTTCACAGCCTATTTTCTCTCGATGTGAATGATTGCAAGCATCTTCAGGAAATTAGAGGGGTTCCACCAAACTTGAAATATTTCAGGGCAATAAACTGTACATCCTTGACTTCCACGGGTTCAAGCATGCTGTTAAATCAGGTTTTGTCATGTTTTTAATGAATTTGATTTGATAATATGTAGTTCATTTAATGAATTTTTGATAAATTATGATTAACAGCAGCTTCACGAGGCTGGAGGGACTGATTTTATCTTTCCAGGAGGAAGTATTCCAGAGTGGTTCCATAAACAGAGGAAGGAACCTTCAATTTCTTTCTGGTTTCGAAATAAATTCCCTGCCAAAGTTCTTTGTCTTCTTATTGCACCTGTACTGGGTGATAACGTGACAGGATTGGTTAGATACATTATGTTCATCAATGGCAGAGTTAGAAAACAATATTTGTTACATTATCTGAACAGACAAGTGAAGATGTTGGAATCAGATTATACACATCTCTTTGATCTACAACACTCACATTTCTCCACTGATGATGATCTGATGGAAGAAGTGTCTTTAGAAAAGGAATGGAATCAGGTGACGATCACATATGAAGGTTTGATAGAGAGTTCCCTCATTAAAATAATCGGAATCCATGTTGTAAAAGAGGAAAACAGCAGCATGGAGGACATTCGATATGATGATCCTTATGCAAACACAAATGAAGACAATCACCTCAACACTTCCCAATCACAACCCTTCTGTGAAAGAGGTTTAATGTTGACATGCAAGTTTTTTATAGGTTCCTTTATGTTGTTCTCTTGCTTTGTATTATTAATTTTATCTAACCTCACAAACAACCCAACCTGA