Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16656 LG4 27249852 27253085 probable leucine-rich repeat receptor-like protein kinase At1g35710
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryo development ending in seed dormancy, meiotic cell cycle process, protein phosphorylation, embryo development ending in seed dormancy, meiotic cell cycle process, embryo development ending in seed dormancy, adaxial/abaxial axis specification, protein phosphorylation, protein phosphorylation, cytokinesis, tissue development, meiotic cell cycle process, embryo development ending in seed dormancy, embryo development ending in seed dormancy, cytokinesis, specification of axis polarity
Cellular Component   located in   extracellular region
Molecular Function   enables   protein kinase activity, protein kinase activity, ATP binding, protein kinase activity, ATP binding
SNP Position Effect Amino acid change
C/A 27249875 missense_variant p.Gly670Val
G/T 27250250 stop_gained p.Ser545*
G/A 27250351 intron_variant
T/A 27250363 intron_variant
A/C 27250364 intron_variant
T/A 27250377 intron_variant
A/C 27250451 intron_variant
A/G 27250461 intron_variant
T/C 27250463 intron_variant
A/G 27250470 intron_variant
T/A 27250485 intron_variant
G/A 27250500 intron_variant
T/G 27250510 intron_variant
C/T 27250577 intron_variant
C/T 27250661 intron_variant
T/A 27250676 intron_variant
G/A 27250750 splice_region_variant&intron_variant
T/C 27250880 missense_variant p.Arg475Gly
G/A 27250885 missense_variant p.Thr473Met
T/A 27250892 stop_gained p.Lys471*
C/A 27250972 missense_variant p.Ser444Ile
C/A 27251075 missense_variant p.Val410Phe
T/G 27251608 missense_variant p.Glu232Ala
A/G 27251671 intron_variant
G/C 27251864 missense_variant p.Pro179Arg
T/C 27251979 missense_variant&splice_region_variant p.Thr141Ala
C/G 27252279 splice_donor_variant&intron_variant
C/T 27252286 missense_variant p.Ala138Thr
C/A 27252355 intron_variant
T/C 27252376 intron_variant
A/T 27252432 intron_variant
A/G 27252480 intron_variant
G/A 27252517 intron_variant
C/T 27252525 intron_variant
G/T,A 27252607 splice_region_variant&intron_variant
C/G 27252679 intron_variant
A/C 27252693 intron_variant
A/G 27252741 intron_variant
A/G 27252854 synonymous_variant p.Leu78Leu
C/A 27252923 missense_variant p.Gly55Cys
G/A 27252970 missense_variant p.Ser39Phe
A/G 27253002 synonymous_variant p.Asn28Asn
G/T 27253043 missense_variant p.Leu15Ile
T/C 27253059 synonymous_variant p.Pro9Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16656.1
MVCSVHLLPLLFLLLLALLLNPTCVCGNDELRALMDLKSSLDPEGRFLSSWTMDGNPCGGYFEGVACNEKGQVANVSLQGKGLSGRLSPAIGGLKHLTGLYLHYNSFISHLDLASCGPLSKKDVFATIEIILNNLVLTARVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPATLGDLEILTRLDLSSNNLFGSIPTKLANLPSLQVLDVHNNTLSGNVPTALKRLENGFVYENNVGLCGVGFSSLKACTASNNVNLTRPEPYGAGVGSISRDIPETANVKLPCNTTHCQNPSKSKQATSITVGIVLVTIAVSAIGVLTFTVYRRRKQKLGSAFDTSEGRLSTDQAKTIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDLFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAIKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGDGEVLEWSTRISIVKGIAKGIAYLHAHKSNKPALVHQNISAEKVLLDRRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQIITGKQKITSAMRLAAESFTFQEFIDPNLRGKFFEYEAAKLAKMALLCSHESQFERPSMEAIVQELGNCSSCL*


CDS Sequence:
>Vu_16656.1
ATGGTTTGTTCAGTGCATCTGCTTCCACTTCTCTTCCTCCTCCTCCTGGCTTTGCTCTTGAATCCAACATGTGTCTGTGGCAATGACGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCAGAGGGGCGATTTCTGTCCTCATGGACCATGGATGGCAACCCCTGTGGTGGTTACTTTGAGGGAGTCGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTTTGCAGGGGAAAGGCCTTTCTGGGAGGCTTTCACCGGCCATTGGTGGACTTAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTTATTTCCCACCTTGATTTGGCTTCTTGTGGTCCTTTGTCAAAGAAGGATGTTTTTGCAACTATTGAGATTATTTTGAACAACCTGGTGTTAACTGCAAGAGTTTTACAGCTCTGTTATAATCAGTTAACAGGAAGCATACCTACACAGCTTGGCGATTTGAAAAAGCTCAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTACCCTAGGAGATTTGGAAATATTGACGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAAACTAGCCAATCTTCCTTCACTGCAAGTTCTGGATGTTCACAACAACACTCTCTCTGGGAATGTACCTACCGCTTTGAAGAGACTAGAGAATGGATTTGTGTATGAAAACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAAATAATGTTAATCTCACTCGACCTGAACCTTATGGAGCAGGAGTTGGAAGTATCTCTAGAGATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCTAAATCCAAACAAGCCACATCTATCACAGTTGGCATTGTTCTAGTAACAATTGCAGTATCAGCAATTGGTGTTTTGACCTTCACCGTGTATAGGCGGCGGAAACAAAAGCTTGGAAGTGCCTTTGATACTTCTGAAGGCCGACTAAGTACAGATCAAGCCAAGACTATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTATTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATTTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCTACATATAAAGGGGTTTTGAGAGATGGATCTGCTGTTGCTATCAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCGCTGAGAAATGAACATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGAGAATGCTTTCTGGTCTATGATTTTGTTCCTAATGGAAACCTTACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAATTTCTATTGTGAAAGGAATTGCTAAAGGTATAGCATATTTACATGCACACAAATCAAACAAACCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTACTCGATCGGCGGTACAACCCGATGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTAAAGGGTAGTGCAGCAAAGGGATACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTATGCATTTGGAGTGCTTCTTTTCCAGATTATCACAGGGAAACAGAAGATCACAAGTGCAATGCGCCTTGCGGCAGAGTCCTTTACATTCCAAGAATTTATTGACCCGAATTTGCGTGGCAAGTTCTTTGAATATGAGGCAGCTAAACTAGCCAAAATGGCTTTACTTTGCTCCCATGAATCTCAGTTTGAGAGGCCAAGCATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGTCTTTGA


Promoter Sequence:
>Vu_16656::LG4:27253085-27255085(-)
ATTTAAATATTTATTTTCTATTTTGTAACCTTTTAAAAATATTTTTAAATTTTATCAGTTTTAGTGTTTGTAAATTTAATGAATGTCTGATAAAATATTTATTTGATATTGAAAAAAAATGAGAATATATTATTTTAATATTGGATATTCGTTAATATTATGCTTTTATTTTTTACAATTTTTTAAATATTTTATATAAATTAATTAATTAATACATATACAATAAGAAAGTTGTCAGGGGTATAGATACATGTTTATATCCCTTATTAAGTTGAGATGAAAATAAGATAGAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACTTGAGTATTGTGATGAGAATGGAATTTTTCTTTAAAAATGAGAATGAGTATGACAGGGCAATGTAATAACAAAATTAAAATTAAAATGAAGTGAAATAAATCATAAATATTTGTAAAATTAACAATTTTTTGGATTCATAGCAAAACAAAGTAAGTGAAAAAAAGGAGTGTAATAGCAAAATTCAAATTCAAATGAAGTGAAATAAATCATAAATATTTGTAAAATTAGGAATTTTTTGGATTTATATCAAAACAAAGAGGTATGTCTGAATTTTTATTTGGACCCAAGAGTGAAAAGGAGGGTGTAAATAAAAAAGATTGAAATACAAAAACTAAAGAAAAGTGAATAAAAGGTGACATTTTACTAATTTTCTTTATTTTTTAATGTAAAATCTTTTATTCCCTTAATTTTAATGTAACTTAGAAACGTAAAAAAAAAGTAATGTTGAATTAAAAAAGTTATATTCATTTATTTTAAAAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGCCGTTTCTGGTTTTCGTCCCTCTTCCAAAGTAAGGTACAATTTGGTCCTCTTTCTTTAGAAAAACGTTCGTTTTAGTTCTCAAAATTTTGTTTTTAGTCCTCGTTTTAGTCCTCAAAACGTTCGTTTTTTCATAATTTCTCGTAGATACATATTTAATCATATTTTTTAATAAGTGAAGACAATTAATAAAAAAATATACTATTAAAATTTAATTAAAAAATATAAAAAAATTCAAATACCTAATAAATAAAAAATTAATAAAAATTTAACTGAAAAAATAAAATTTAAAAAATACAAAAGTCTCAATCAAATCTAATTCAAACAAAAGCTAAATTAAGTGACATAAACCATAATAATTGAATTGTAGCGAAACTTAAATGAAGTGAGAAAAAGTTATTACGAGTGCAAAGTTAAGAATATAATTAAGTTTACATTTCTCTATGCTTTGTTTGGATAGGTGGAACAATCTCTGTTGATTTTTGTTCTCATAATAAATAATAAAAATGATGATAGCATATCACTGTAACACTATCTTACTTTCTCTCCACCCAAAAACAAAAATCTCTCTTTTCACTTCCAAAGAATGAATACACAGCAGTTATATCGGAGAACAAATGTCACGTCCAAACACATCACAACATGCACACTATTCAACTGCAACTTCACAATCCTCATACACACCTTTTCAAACTTCAACCAATCTGATGGTCAACACTGCATGTGCATCATAACTCCCATGCAATGTGCACCACTGCTTTTCACCCCTTTCTTTATTTATTCTCTCAATATTTGTAATTATAATCACTAATTATGTTGCTTAAGTAAAGGATAAGCTACATTAACACCCTTTGTGCTTGGCCAAATTTGGCTTAAAATTTCTCCGATTTTTACACCTGTGTTTTAAATTACTGTTTATTGTTTTATGTTTCCTTTTTAGTTTCTGACCTGTCTGTTTTCCTGCACCTTTTGTCACTTCCACCACCACTTAGTAGAGAGAAAAGAAAAACGCACAAAACCAGACACAAACACTGCTGTTACAGAATCTAGTAAACTAGTTTTCAGAACAACATAAAAACAATAACCATAGCAAGGAGTTTGGTTGAATCAGTTACCATTTTCATCTGAAC


Gene Sequence:
>Vu_16656(-)
ATGGTTTGTTCAGTGCATCTGCTTCCACTTCTCTTCCTCCTCCTCCTGGCTTTGCTCTTGAATCCAACATGTGTCTGTGGCAATGACGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCAGAGGGGCGATTTCTGTCCTCATGGACCATGGATGGCAACCCCTGTGGTGGTTACTTTGAGGGAGTCGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTTTGCAGGGGAAAGGCCTTTCTGGGAGGCTTTCACCGGCCATTGGTGGACTTAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTGTATGGGGAGATTCCAAGGGAAGTTGCAAACTTGACTGAGCTCAGTGACTTGTACCTGAATGTCAATCATCTTTCTGGTGAAATCCGACCTGAGATTGGCAAGATGGAGAAGCTTCAAGGTATAATGATGCCATTTTTGGTTTAAAAATTGAAACTTTCAGTATTTCCCACCTTGATTTGGCTTCTTGTGGTCCTTTGTCAAAGGTTTTTTGTTGGGTTTTTTGAATGTTGTGTGATTGCGGGTTTTACCGAAAGATTCGAGCTTTGTTTTGTTTATTTGCTGTGTCATTGAGTTTCTTTTTCTGTGATTGGTATTTTTATCCTTTTTTCTCCTTCCAATGGTTGGTTCTCTTGCACCGTGATGTTCCAAAATAGTTAATTCACGTGATAACGAAAAAGAATGGTAGCTTGGAATGTTTTTGGACCAGAAGGATGTTTTTGCAACTATTGAGATTATTTTGAACAACCTGGTGTTAACTGCAAGAGGTAGGTATGAACTAGAAAATTAAAGGGTAACAGTATTTTTAACCTCTTGTCCCGTTTCTGAGATCTATTTAATATTTTTTTTTCTGCATAAATGAAGGATTTATGTAACGCTACAATTCATTCAAAATTCTAGCATCGAAAATTGTTCATACAAAAAAGTTCCAAACGCATATCAGTGTCTGTTCCCTAGAACTGAATTCTTACTGTTTGCTTTGGCTTTTTTCGTTGAAATCGTGTTTGATTAATGGTTTAATTTTGGGAGTGTGCTTATTTGTTCTTTTCACATGTTTTTGCAGTTTTACAGCTCTGTTATAATCAGTTAACAGGAAGCATACCTACACAGCTTGGCGATTTGAAAAAGCTCAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTACCCTAGGAGATTTGGAAATATTGACGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAAACTAGCCAATCTTCCTTCACTGCAAGTTCTGGATGTTCACAACAACACTCTCTCTGGGAATGTACCTACCGGTATAATGATGCTATTTTATTGGTTCTGTTCTGTTCATTTCTTTATCAATATTTTTATGTAACATAAGTTTAATCTGCTTTCCTTTGTTTGATGAAGCTTTGAAGAGACTAGAGAATGGATTTGTGTATGAAAACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAAATAATGTTAATCTCACTCGACCTGAACCTTATGGAGCAGGAGTTGGAAGTATCTCTAGAGATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCTAAATCCAAACAAGCCACATCTATCACAGTTGGCATTGTTCTAGTAACAATTGCAGTATCAGCAATTGGTGTTTTGACCTTCACCGTGTATAGGCGGCGGAAACAAAAGCTTGGAAGTGCCTTTGATACTTCTGAAGGCCGACTAAGTACAGATCAAGCCAAGACTATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTATTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATTTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCTACATATAAAGGGGTTTTGAGAGATGGATCTGCTGTTGCTATCAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCGCTGAGAAATGAACATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGAGAATGCTTTCTGGTCTATGATTTTGTTCCTAATGGAAACCTTACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAATTTCTATTGTGAAAGGAATTGCTAAAGGTCACTCTTCTACCACACCTTTTATTAAAATACTTTGATTCTTCAAAATCAGCATCTTTTAAATATTCCAAGATATAAAGTATACATACACGACCAACAGCATGCTATTGCTATGTTTGGTGAATAACTGAGAGCATTTCTTTTCTTGCTACTACTATTCATAGATGCTTCAAGAGATGCTAAGCTAACACCATCATATTACATTACATTACATATTATATGCTTTAAATAAACACATGCTCAGTTGCAAAACTATAGCCTAATTGTAGACTAAATTTCCTTTAACATTATTGTGATCCATTTGCATTCATTCATTTTGATGAAGTGATCATTTAATTACTTAACACAAGAAGTGACATATTCTCATGGTTTCCAATCTTCATGTGTATACTGAACAGAAACCTTGTTTTCTTAACCAGGTATAGCATATTTACATGCACACAAATCAAACAAACCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTACTCGATCGGCGGTACAACCCGATGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTAAAGGGTAGTGCAGCAAAGGGATACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTATGCATTTGGAGTGCTTCTTTTCCAGATTATCACAGGGAAACAGAAGATCACAAGTGCAATGCGCCTTGCGGCAGAGTCCTTTACATTCCAAGAATTTATTGACCCGAATTTGCGTGGCAAGTTCTTTGAATATGAGGCAGCTAAACTAGCCAAAATGGCTTTACTTTGCTCCCATGAATCTCAGTTTGAGAGGCCAAGCATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGTCTTTGA