Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_16619	LG4	26819752	26821731	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	26819902	synonymous_variant	p.Leu610Leu
C/T	26820395	missense_variant	p.Ser446Asn
T/C	26820419	missense_variant	p.Lys438Arg
C/A	26820445	missense_variant	p.Lys429Asn
C/T	26820508	synonymous_variant	p.Val408Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_16619.1

MPSRQLSTSSDTPPHHHHHHFFIPLLAVTLSAFSLLLLFLFLCLHRTLTRKRTAHPPSPPPSSSPPHRLSFSVLRRATNSFSSRLGHGGFGPVFAGTLAGVPVAVKLMDSASSHQGEREFHNELFFASKLLSPHVITATHFSSDPKRRRFLLVYELMQNGNLQDALLHRKCPELSNWNTRFSIILNIAKGIHFLHSCDPPVIHGDIKPSNVLLDRDFSPRIGDFGLARLSSEPPRFEIEVLECGSVNNDEEKRKVKEEEVEDCGSVASTHSVFMEESSLGVEQSPSPETAAMMAMTSPETGLAVAGASPGFEKEDAKKMNGKGLKSNSVRDWWWKHENDVGSGESKKVKDYVMEWIGRDVNKERVKGGIECGDVEMGKEEAKKKKKKRRVKEMEWWESMEEENFDGVVKGKRKTVRDWWKDECFEENEKKDKKKKKKKRKGGGVKSDNIENGDDWWVSDDALDKRKGKSRSRNNRGNMDWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGDVTEKSDVYSFGVLLLVIISGRRPLQVSGSPLSEFQRANLLSWARHCARNGKLLELVDESLQLLDKEQALLCIKVALLCLQKSPIRRPSLKEVVGILSGMLEPPQLPVEYSPSTPSRYPFKSRRKGT*

CDS Sequence:
>Vu_16619.1

ATGCCATCCCGACAACTCTCCACCTCATCAGACACACCGCCACATCATCATCACCACCACTTTTTCATACCTCTCCTCGCCGTCACCCTCTCAGCCTTCTCCCTCCTCCTTCTCTTCCTCTTCCTCTGCCTCCACCGTACCCTCACCCGCAAACGCACCGCCCACCCTCCTTCTCCTCCTCCTTCCTCTTCCCCCCCGCACCGCCTCTCCTTCTCCGTCCTCCGCCGCGCCACCAATTCCTTCTCCTCCCGCCTCGGCCACGGCGGCTTTGGTCCCGTATTCGCCGGCACCCTCGCCGGAGTCCCGGTCGCCGTCAAGCTCATGGACTCTGCCTCCTCCCACCAGGGAGAGCGGGAGTTCCACAACGAGCTCTTTTTCGCATCCAAGCTCCTCTCTCCCCACGTCATCACCGCCACGCACTTCTCCTCTGACCCCAAACGACGCCGCTTCCTCTTGGTCTACGAGCTCATGCAAAACGGCAACCTCCAAGACGCGCTTTTGCACCGCAAGTGCCCCGAACTCTCGAACTGGAACACCCGCTTCTCAATCATTCTCAACATAGCAAAAGGAATTCACTTTCTCCACTCCTGTGACCCCCCTGTTATCCACGGCGACATAAAGCCGAGTAACGTTTTGCTTGATAGGGATTTCTCTCCCAGAATTGGCGACTTCGGGTTAGCGAGGCTGAGCTCGGAGCCTCCGAGGTTTGAAATTGAGGTGCTGGAGTGTGGTAGTGTTAATAATGATGAAGAGAAGCGGAAGGTGAAGGAGGAGGAGGTTGAGGATTGCGGATCGGTGGCGAGTACTCACAGTGTTTTTATGGAAGAAAGTAGCTTGGGGGTGGAGCAATCTCCTTCGCCAGAGACTGCGGCGATGATGGCGATGACTTCGCCAGAGACGGGTTTGGCGGTGGCAGGGGCGTCGCCGGGGTTTGAGAAGGAGGATGCGAAGAAGATGAACGGGAAAGGGTTGAAGAGTAATTCGGTGAGGGATTGGTGGTGGAAGCATGAGAATGACGTTGGGAGTGGGGAGAGTAAGAAGGTTAAGGATTATGTGATGGAGTGGATTGGAAGGGATGTGAATAAGGAGAGGGTGAAGGGTGGAATTGAGTGTGGGGATGTGGAGATGGGAAAGGAGGAGGCCAAGAAGAAGAAGAAGAAGAGAAGGGTGAAGGAAATGGAATGGTGGGAGTCAATGGAAGAGGAGAACTTTGACGGGGTTGTGAAGGGGAAGAGAAAGACCGTGAGGGATTGGTGGAAAGATGAGTGTTTTGAGGAGAACGAAAAGAAGGATAAGAAGAAGAAGAAGAAGAAGAGGAAGGGTGGGGGTGTAAAGAGTGATAATATTGAGAATGGTGATGATTGGTGGGTGAGTGATGATGCATTGGATAAGAGGAAGGGAAAGAGTAGGAGCAGAAACAACCGTGGGAACATGGATTGGTGGATGGATGGATTGAGTGGTGAGTTATGGAGAGGAAGGAGGAATAACAGCTTTGATTCTGCAAGTGGGGAGATTCCAAAGAGTGGTGGTGTTAGCAGTACTCCTAGTATGAGGGGAACTGTGTGTTATGTGGCTCCTGAGTGTGGCTATGGTGGGGATGTGACAGAGAAGTCTGATGTGTATAGTTTTGGGGTATTGTTGCTTGTCATAATTTCTGGGCGGCGACCACTTCAAGTGAGTGGTTCGCCTTTGTCTGAGTTTCAGAGAGCGAATCTACTTTCCTGGGCACGCCATTGTGCACGAAATGGGAAGCTTTTAGAGTTGGTTGACGAGTCTCTGCAGTTGTTGGATAAAGAGCAGGCTCTTCTCTGCATCAAGGTGGCTTTGCTTTGTCTGCAGAAGTCACCTATTCGTCGTCCTTCATTGAAGGAGGTTGTGGGAATTCTCAGTGGGATGTTGGAACCACCCCAATTGCCTGTTGAGTACTCTCCTTCAACCCCTTCTCGCTACCCTTTCAAGTCTAGGAGAAAAGGAACGTAA

Promoter Sequence:
>Vu_16619::LG4:26821731-26823731(-)

CTCTACGTTAATGAATTTTTAAAATTTAATTTTTGTGATATTCAATTTTTATATATCTTTTTTTTAACGTGAAATCTAAACTTTCTTGAATTTTTTAATAATTTATTTTTCAAATGTGAATTTTTCATTAATACTTCTCCTTAGTAGTTAATTAAGTACTAAACCTATTTAGTTAATCACCAATCAAATTAACTCCATATAACATATATCTTCTCCAAAATACTAGTGTTAGTTTTTTTTTTTTCCTTTGGATTGCATTAAAAAACAAAAGAGACAATCAATGTGAAACAATGAGTATATGACATCACGTATAATATCATGAAATTAAGGAACCGATTTTTTTGTTTGTCATAATGTAAACATGGAAAGAAAAATGATACCAACTGGAAAAGTGCTTTTTACATATACACTGAGAAAAAGTCAATTCAGTAACATCAATCCCCAGTCTGTGTTGCAATTGTAGCTGTACAGATAAATACAACAAAACTACAAAACAAGAAATACAGTACTAATAAATAAATAAATAAATTCCTGGCCAGTGCTGCAATTGTAGCTGTGCACATAAACACAAGCAAACCAAAACACAAGAAACAGATAACTAATTAATAAATAAATAGATAATAGAAAGAGCACTATACAGAAAAAGATAAGAATTCACAGTTCTAAAGAAGGTCAAAGTCAGAATATAGAATGCGTAAGAAGTTTGAGTATTAAAAAAAAAAAAACTTATAGGAAACGTCTAATGTACGATTAGATTTTGATGTATACATCAAACTTGCACAATTGGTAGTATATTTTACAAGTTTTGTAAAATTAAAAATAAAACTATCTATTTATTCTTTTTTGTATATTATAACTTTATGCCTTTTCTTTTATTTAAATTGAAAGAAGTTCATTCCTTTTTGTGGTTTTCTTAAATTTTAACTGCCTTTAAAAGTTATTAGTATTCCAAATTCAACTCTTTTAACACGTTTTAGCAAAATTCAACTCTTTTCCACTGATACTTTTTCTGAATTAAAAGAAAATTATTTCATTATTTATTGAATACTTTTCAAAAAGTACATGCAAAATATTTTACATTTGCGGGAATTCATATATGTAATGGCCAATAAAATTATCTTATAAAATATAAATATAAATAAAATAAAAATATTTAAAAATAAATAAATTACGAGTTTATAGAAAATTGACAAATTTAAAGCTACTTAGTTTTATGAATTTAAAATAAAACATAAATTTATCAATAAAATTATGTCGTTATGCTTTCTTAAATATGCTTAACAGAAAAACTTTGTATCTAGTAGAGTTTTCATCAGATACTAATTTATGTTTGGGAGAGCTAAGTTTTACTCAGTAAAAGCTTATTATTTGAAAATAATAATTTTATACTAATGAATTGACTGAATGATGATTACATTTATCTTATAAAAAATATATTTTTCTTTCTTAAGTTAAACTGTGATTAAATTTAATTTTTTATAATACTTACAAGTAAAACATTAATGTATAAATTAAAAAGATTTTAAAAGATTTTATTAAATACTGTTTTTTAATTTATAAACTATATATTAGTTAAGTTAACTCAGCCATCATAAAACATTTTATTATATTAAGTAATCACATCAGAGTTAATAATAGTATTCTTTTCAAAACACAAAAAATAGTATCATAACGTCGATGTCTGACTCGCTATGCAAATTGGTATCGAAACAAAAGAAAAACAACCTCAGTCCAGCAAGAAACAGTCATCTCAACTCAACGTTGGACACAGATCACTTTGACACATTGCACTTTCATTCTACACACTCTTCTGCAGACACAGACACCGAACTCTTAACCACCAAACTCTTACTCTCATATACATACAAAACAAATTCACAAAATTCTCTCTATTCTTCTTCTTATTCTTCTCTTCATCTTCATCTCTTCACAACCACAAAACCATGAACAACCCATTCTCCAAGACAACTTGAATCCAACCCTCAAACAACATCTCCAAC

Gene Sequence:

>Vu_16619(-)