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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16614 LG4 26771988 26773347 hypothetical protein LR48
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein phosphorylation, protein phosphorylation
Cellular Component   is active in   plasma membrane
Cellular Component   located in   nucleus, plasma membrane
Molecular Function   enables   non-membrane spanning protein tyrosine kinase activity, non-membrane spanning protein tyrosine kinase activity, non-membrane spanning protein tyrosine kinase activity
SNP Position Effect Amino acid change
A/G 26772330 missense_variant p.Leu86Pro
A/C 26772576 upstream_gene_variant
A/G 26772726 upstream_gene_variant
C/A 26772878 upstream_gene_variant
A/G 26773007 upstream_gene_variant
G/A 26773095 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16614.1
MNLKQYCCFLSDEGQSKIQIARKKSNRDYPWEMYLHHESTPHIIHRDIKASNVLLDSEFQSKVADFGFAKLVPDGVTHMTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWATPFVNKGLFGNIADPKLKGRFDLQQLKNVTTIALRCTDTSADKRPNMKEVVNWLKNGVGST*


CDS Sequence:
>Vu_16614.1
ATGAACTTGAAGCAATACTGTTGTTTCCTCTCAGACGAAGGGCAAAGCAAAATTCAAATTGCTAGGAAGAAGAGCAATAGGGATTATCCATGGGAAATGTATTTGCACCATGAGTCAACTCCTCACATCATACATAGAGATATAAAAGCGAGCAATGTTCTTCTGGATTCTGAATTCCAATCTAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCAGATGGTGTGACCCATATGACTACAAAGGTTAAAGGCACTCTAGGATATCTGGCACCAGAATATGCTATGTGGGGAAAAGTTTCTGAGAGTTGTGATGTTTACAGCTTTGGAATTTTACTGTTGGAGATCATCAGTGCGAAGAAACCCATTGAGAAATTTCCTGGAGGAGTGAAAAGGGATATTGTTCAATGGGCCACACCATTTGTCAACAAAGGTCTCTTCGGCAATATCGCAGATCCAAAACTGAAGGGGAGATTTGATTTGCAGCAGTTGAAAAATGTGACCACAATAGCTCTTAGATGCACTGATACTAGCGCAGATAAGAGGCCTAACATGAAAGAGGTCGTCAATTGGCTCAAGAATGGTGTAGGGAGCACTTAA


Promoter Sequence:
>Vu_16614::LG4:26773347-26775347(-)
GACAAATAACACTTCACCTTCAAGAGAAGTAATGTAGTTACACACTAAAATATTTCTTATAATTATAATCCGAAATTGAATAATATTATTTTCTATTTTTCTACAAGAATTTTATTAAAGACAAGATATTCAGTCATTACAGGAACTCTTTTAGAAAGAAGGATTGCTAGTTTTTAAATTATATTTTATTGTTATTGAAGAAATTTCTAAATTAGACATTTAACCAGTCTCCAAAATTAATGTCCAAGATTTTATTTACTTTCAATTTAGATTTTAATTTACTCCCAACTGATTGTTAGCAAATAGTTCATTAAACTTAGCTTAGAGACATTAATTTATTTGTAGAAACAAAATATTTCTTATTTTTACAAAAATCTCAATAATAAAAGTGATAAAAATGGAAAATATAAAGAGGAACAAAATATATATGATTCTTTTTAATTCCTAAAAGAATCTTATTTCTAGAAATGTTTCAAATACATATAATATAATCCTTCTTTTCATTTAGTTTTGATATCATTATAATAATGATAAGGTTATTTAAAACATTAAATGAAAAAATAAACTTAAGAACTAAATTATTAGAAAATTTAAAACGTATTTAAGTCTCCATATTAATTTAACCCAATGAATTCATGTGAATAAGTAGTGACATGAAGGGCAAAACTAGTCAAAACGGCAAAGAAATTAAAAGGTCAACGACTCAACTTCTGATTAGACGCATGATAAGTATTAATAATAGCTAAACCAAATGATTCGTTTAACTTAATCTCTAATACCATATTTCTTCCTTTTTTTTAATAATCAGACCAGTTACTATAGGTGGTGGCTTTATTATTGGAAAATGTCTGTCACGTCACTTCTTTTCTCAAATATTAATATTTGGCAAAATTATAATATGATAATGATATTTCACAATATTTTAATAGGATTGATCTAAAATTATTTCACAATTAATAATAATAATCATAAATATCAATTTAGGTCAATGACATATAAAAATATTAAAATATTGTTAAAATAATATTGTTAAAGTATCATTGTTCTTATAATATAACAAAGACAGAATATATTAATCATATTACTTTAACCTTTCTCGGAAATTTTACTACGAAGAGACTTTCCTGGAATTTCCACACCATTGTAGCACGTAATGACCCTTTAGCCTCCTTTATCAGATAAAAGAAAAAAGAAAAAAAAAACTCTTCTGACTGCTCATAAAATTTGAAAATTCCATAAAATTATAATTTAAAGTATAAAAGTAAAGACAATATTTATTTAAAAATTGGTCTTTTAAACTTACTTCTTAACAATTCTCACTCTAAAAAACTGGTATACGAGGATTAGATATCCACTTATTAATACTACGAAAAGAAAATTGTTGTATGCTTAAGAGTGTGAAAGGGTAAGAGCTATATACTGTGCTTGATTGAGATATTTTTCCAACTGAAAAATACCAAGAAATTTACAGAATTAAAAATCTTCTTAGTATACACCAAACATGGAATCTACTTCCATTGCCAAATTTCCGCCGTTGATAAAAAGTTGGGATGGCAGTGACAGCATCACTTTCCATTGGTGAAAATTATCCAACTCAAGCTCTAACAGGACCATCAATTTTTCTATACAAGAAGTAAGACGAATTGGTGCATTGTTGTAATAATTAAGCTCACACGAAAAGTAATATAAAATGTGACAATTCCAATGAAAAATGAAGCTTAACGAAGGCTAGCAAACAATGGCATAGGCCACAATTTGATGCATAAAATATACACAGAATTTGTTTATATTAACCTTAAGCGACCTTGACTTCCAAGGTAGTCCCTTGTCGATACCATAAACATCTTCTGTCTTCTTTGCATTTGCCGGTTCACATTATTATGCTTCTTTCTTGCAGGGTTTGAGTTGAGCCTATCTTTCATTTTGTTTTTAACTTCAACCCTTCCAACTTTCTCTTCTGTCAAACTGAACTAAGATTCTAAAGATTCTTCCTTCAAACA


Gene Sequence:
>Vu_16614(-)
ATGAACTTGAAGCAATACTGTTGTTTCCTCTCAGACGAAGGGCAAAGCAAAATTCAGTACGGTTTTTATATCTGCTTAATTTTCATGCGTGAGTTATCATAATTTTAGGTTTTCAGTTAATATATCTGTTTTTTTTTTTTCTTTTCTTCTTTTTACCAGAATTGCTAGGAAGAAGAGCAATAGGGATTATCCATGGGAAATGTACACCTTGAAGGAGTTGCTTAGAGCCACAAACAACTTTCATCAAGATAACAAGATTGGAGAGGGTGGATTTGGCAGTGTATATTTTGGTCGAACAAGTAAAGGAGTTCAGGCAAAATATCTGAACTTTTGTTTGATATATATATATAAAGTTTAAGCATGACATAGTTTGTGTTGAATGGACAAATTTAAATCTGCATCGTGTCAGTTTTTGGTTTAAACATGAACTGATGTATACTGCATAAAATACGAGGGTTTGAACAGATTTGAAAATCTGCAGATTGCAGTGAAGCGATTGAAGACAATGACTGCGAAAGCAGAAATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATCTGTTGGGGTTGAGAGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAATCATAGCTTGCTCACACATTTGCATGGTCCACTTGCCAAGGAATGTCAGTTAGATTGGGCGAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGTTTATTGTAAGTTTAACTTCTCCATATTTGTCTTTCATGGTTCCAAAAATCTTGACATTATTCAACCAACACAATTGACACAACTGATGTTTGTGAATATGTTTTTTGTTTCTGGATAAGGTATTTGCACCATGAGTCAACTCCTCACATCATACATAGAGATATAAAAGCGAGCAATGTTCTTCTGGATTCTGAATTCCAATCTAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCAGATGGTGTGACCCATATGACTACAAAGGTTAAAGGCACTCTAGGATATCTGGCACCAGAATATGCTATGTGGGGAAAAGTTTCTGAGAGTTGTGATGTTTACAGCTTTGGAATTTTACTGTTGGAGATCATCAGTGCGAAGAAACCCATTGAGAAATTTCCTGGAGGAGTGAAAAGGGATATTGTTCAATGGGCCACACCATTTGTCAACAAAGGTCTCTTCGGCAATATCGCAGATCCAAAACTGAAGGGGAGATTTGATTTGCAGCAGTTGAAAAATGTGACCACAATAGCTCTTAGATGCACTGATACTAGCGCAGATAAGAGGCCTAACATGAAAGAGGTCGTCAATTGGCTCAAGAATGGTGTAGGGAGCACTTAA

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