Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_16597	LG4	26468892	26472511	calcium-dependent protein kinase 26 isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein autophosphorylation, protein autophosphorylation, protein autophosphorylation, peptidyl-serine phosphorylation, intracellular signal transduction, protein autophosphorylation, protein autophosphorylation, peptidyl-serine phosphorylation, peptidyl-serine phosphorylation, protein autophosphorylation
Cellular Component	is active in	cytoplasm, nucleus
Cellular Component	located in	cytoplasm
Molecular Function	enables	calmodulin-dependent protein kinase activity, calmodulin-dependent protein kinase activity, protein serine/threonine kinase activity, calcium-dependent protein serine/threonine kinase activity, calcium-dependent protein serine/threonine kinase activity, protein serine/threonine kinase activity, calcium-dependent protein serine/threonine kinase activity, protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, calmodulin binding

SNP	Position	Effect	Amino acid change
C/T	26469153	3_prime_UTR_variant
G/A	26469169	3_prime_UTR_variant
T/A	26469542	missense_variant	p.Lys462Ile
G/C	26469547	missense_variant	p.Asp460Glu
C/T	26470387	intron_variant
A/T	26470485	intron_variant
C/A	26470628	missense_variant	p.Val253Phe
C/T	26470656	synonymous_variant	p.Gly243Gly
A/C	26471314	synonymous_variant	p.Ser59Ser
C/T	26471323	synonymous_variant	p.Arg56Arg
C/A	26471839	intron_variant
A/T	26472224	5_prime_UTR_variant
T/C	26472367	5_prime_UTR_premature_start_codon_gain_variant
G/T	26472369	5_prime_UTR_variant
A/G	26472377	5_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_16597.3

MAVAKSDSNSEPCTSYNCYKVAALTETILETSQVSNLKDRYVLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLRSVKHEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFSESEARVIFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDRISESAKDLIKGMLCTDPSRRLTAQEVLDHCWMESNQTNQEQLGENQIQSCKQWDVGGSTFSASFMSRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLEEPVTPCVLSAGFSFKSVGDSSGLEFSSPIPSMLSFSFLSPSPVVEHKSCKLECSANMSDVDAIAGEASLGKLLLLQDSHLCIEHDAKETNRKPADAKRSIGMNGHKVLGIHSKRNRTIGLGECEQLDFVVTESVIRWSSCTQLPTSLRSSLVC*

>Vu_16597.2

>Vu_16597.1

CDS Sequence:
>Vu_16597.3

ATGGCTGTTGCCAAGAGCGACAGCAACAGTGAACCTTGTACTTCATACAATTGTTACAAAGTTGCAGCCTTGACTGAGACCATATTAGAGACAAGTCAAGTCTCTAATCTAAAAGATCGGTACGTTCTCGGCGAGCAATTGGGTTGGGGACAGTTTGGTGTCATAAGGGCATGTTCTGACAAGTTAACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGACAGGTTGGTTACTTCGGATGATTTGAGGAGTGTAAAACATGAGATAGAGATAATGGCTAGGCTATCCGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGCTTTGTTCACTTGGTGATGGAACTTTGTGCTGGAGGAGAGCTTTTTCATCGATTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCCAGGGTTATCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGATCCTCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGCCTGGTCAAAGTTTGCACGGTTTAGTTGGGAGTCCTTTCTACATAGCTCCAGAGGTATTAGCTGGTGCTTATAACCAGGCTGCTGATGTGTGGAGTGCAGGTGTAATTCTTTACATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGGAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATCAAGGGAATGCTGTGTACAGACCCTTCTCGAAGACTCACTGCCCAAGAGGTTTTAGATCATTGCTGGATGGAAAGCAACCAAACAAATCAAGAACAACTTGGTGAAAATCAAATCCAAAGTTGCAAACAATGGGATGTTGGTGGCAGCACATTCTCAGCTTCTTTCATGTCCAGGAATCAGGACATTAGCTTTGGCGCCGGCTCTCCTACTTGTGATGCTCAATCCCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACGCCATGTGTGCTATCTGCCGGGTTTTCATTCAAGAGTGTAGGCGATTCCTCTGGTTTGGAATTCTCTTCTCCAATTCCCTCGATGCTTAGCTTTTCATTCCTCAGTCCCTCTCCTGTCGTTGAACACAAGAGTTGTAAATTAGAGTGTTCAGCTAACATGTCAGATGTAGATGCAATTGCTGGAGAAGCTAGCTTGGGAAAGTTACTTTTGCTACAAGATTCTCATCTTTGCATTGAACACGATGCTAAAGAAACGAATCGCAAGCCTGCTGACGCTAAAAGGTCAATTGGAATGAATGGACACAAGGTACTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACTTTGTAGTGACTGAATCAGTCATCCGTTGGTCATCCTGCACTCAACTACCAACATCTTTGAGATCATCTCTCGTTTGCTAA

>Vu_16597.2

>Vu_16597.1

Promoter Sequence:
>Vu_16597::LG4:26472511-26474511(-)

TAATGGGTCATCCACTTGTGGTGGTTTTTTCTACTCTTTAGAGTTATTACCAATGAGTTTCATCCTATCACATACAAGGTAGGCCTATTCCGCGTCTTAGGTCATAATGGAGCACCTAGAGTGTCACTCCTTTTTAATTGAGAATGAATAACCATTAGAGTGTTAATATAACCCCAAAAACCGAGTTTCCTACATTCATACTAACAACACTTGATTCAACCACTTAGAATTTTTCCTTGGAAACTCTTATTCTATCACTCTTTGAAACATACATCGACATCATTCAAAACCATAAATAATATCAAACATATCATACAATATCATCAAATCCTTAAAAGAAACCACAAAACAAAAATGAAAAGCTAAGTAAACTGGCACTAAGGAGCACTTCCTTGCTGCTGAGCGCTATCCCTCTCGCATTCCTGATGCTTGAGCTCCACCCCCTTGCAGCTGGGCACCAAACTTCTCGCAATTCTAGAGCTCAAGCTCCACTAACTATTGTTGAGTGCCACACCAAAAAGTGAAATATCTCTAAATTGACTTTGATTGTTCTCCACACCTATCTAACTGATTAATATGACCTCCTAGGCACTATGAATGTTTTAAAAACATGTTTTTAACTCAAAGTAGCTATCCAAAACCAACTTGATCACTCTAGACTACCTAATCTCACTTATACTCTTTCTAATCCATAAATTGACAACCTAGGGGTTTAAACCAGTTAGTAATAACCCAACAACTTATTTGAAACCATCCACTTTAGCACATACCTAACCCATTGAAACTTCACCAGACAAAACCACTTAAGTGAACAAAAAGTCATACAAAGACACACTTTATTTACAATCACTAAATTCTACTTGAGAATTCTCCTATCTCGAAGTTCAAACAAGTGATAAATGAATCTAGGACATAACCAAGAACCCAATTCAACCCATTCAACATTTACTTCAAAATCTCACCTATCATAACTCCTTTTTAGACCAAAACGATCCATGACTCAACTTACTTCCTAATTCTCCCCTCTACACCAAACGTATACCATAAATATTCACACTAGCAAACATTCACAAGATTAAATCTAATCCAAGTAAGAATTATACCAGACATTCAAAAAACATATTACCACTTAAACTCATCAAAACACAATAAACATTATAACAAATATCTAAATTACAATTAAATTATCCTGTCATCAAAGTAACCAAATATCATATTTGTAAATTAAAATTTAAGAATAAACACTAACTTCCCTTACCTTATCAGAAATGCTACCAAGCTCTACACGGTACATTATTCTTGATTTGAGTTTAAAAAGCTTCTAAAAATATCTATAAATCACAAAATCATGATCAAAACAAGTTCTCAAGACTTTTGATCAACCAAAGATTAAAAAAATTGAATAGAGAACACATCCAAGAAAATTATAGTCGTACATATCTTGAATTAAAATGTTTTAAAAATTTTATAGCGAAAGAAATATTATATAAAAAGACGCACTTGTTTTGAAAGTAGTTAATTGTTTGTTATGGAAACATCATGTTATAATCTTTTATTAATAAATTTACTTAGCATTTTCAGTTGTCCAACTGTTTTAATTTATTTTACTATTTTTTTTAATTAAAGTGACCGATAATTAAGATAGTTTTATATTAAATTTGAAATATGACTTATATACTAATCCATTGGGATCACAATTTAGTGACGAAAAGTTTGCATAATTTACAGGACGTTATGAGATAAAATATCACAATTTTCAACATAAAAAAAAATGTAATAGTTACATTACTTTTTAATTATAACTAAATTTTTAATTTGATAATTTGTTTGATACAGAAATTCGTTAAATATTATAATTAAAATGTGGAAAAAAATAATATTTTGCAAGTTTTATCTTAGCTATGTAAAAAATCATTTATTAAAAAGTAAAAATTGGCCATGTAAATAAGGATGTGGTGATAATAATGAGTGTGAAATAGAAGAAGGGATTGATTTAACTG

Gene Sequence:

>Vu_16597(-)

AATTAGAAGTCGGTGTTGGCGTCCGAGGAGAGCCTTCAATTTCAAAAAGACAGAACCAAACAAAGCAGCTACAAAGTTGGTGTTACTGTTATTGTTGTGAGTGTTTGTTTGTGTGAGCCTCCAAGAGGTCCCTCTTTGGAGCCTATGGTTGCTCTCTCTTCCTTGAGTTCAACCACTGCTCCAACGGCCTCTTTCACTCTCCTCCTTCTCTCTCCTCTTTTCCACTTTTTGACCTTTCTCTTTGCAATCGGTGAGTCCTCTGTGCCGTGCTTGGATCTGGGGTTGTTTGGTTTCTCGTGGACTCTGATGGGTCTGTATTGTTTTCGCTTATTCTGTTCTTTCTGCGCTGTTTTACCTTCTGGGGCTGCGTTTTTTTCGTTTTGGAGTTTATGAGGATCGTGTGGGTGTCTGTTATGGAGGTGATTCAGGTTGGAATTTTTTGTTGGTGGCATAAAGGATTATTTTTTGTTTGTTTTTTTTTCCAGTTTGGTTTGTGGGGTGTTCGTTTTAGAATCACTAATTTTTGTTGTGAAATTTGAAGCTGGGAAGGTTTAGTCTTCAAATTATTGTGACTTGTGATCTGAGTCATGTGATTGGTGTTAAGGAGAATTTATTTTTCCTACGAATATGTTTAGTTTTTTTTTTTCAATTTTATTGTGAAGTGTTTGATGTGAGTCTCATTGTTTTTTTTTAGCAGATCAAGTGATTTGGAAAAGGGAGAATAGTGGTCCCGAGTTCTGACTGGTTCAGATTCATGCTATCGTCTGCCATACGTTGTGTGTTTTCTTTGTCAAATATAAACTCGGTGAAGTTTCCTAAAAAATTTTGACTCTGAAATGGAGTGTTTTGGTTTGTAAGTGAGAAAAATCAAAGGTTGACGTCTGTGTTTTATTTTGCCAAAGAGGTTAGTTCTGTCTCAGGAAGAGCAAATTTGAACTATTCAACAAGAGTTCTTTTGGGTAAGCAAATTGAATAGTTACCTATATTTCTCGGTTTGTTGAGGAGGGAGGAGGAAATTGGTATGGCTGTTGCCAAGAGCGACAGCAACAGTGAACCTTGTACTTCATACAATTGTTACAAAGTTGCAGCCTTGACTGAGACCATATTAGAGACAAGTCAAGTCTCTAATCTAAAAGATCGGTACGTTCTCGGCGAGCAATTGGGTTGGGGACAGTTTGGTGTCATAAGGGCATGTTCTGACAAGTTAACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGACAGGTTGGTTACTTCGGATGATTTGAGGAGTGTAAAACATGAGATAGAGATAATGGCTAGGCTATCCGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGCTTTGTTCACTTGGTGATGGAACTTTGTGCTGGAGGAGAGCTTTTTCATCGATTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCCAGGGTTATCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGATCCTCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGCCTGGTACTTTTTCCTTTTCTTCCTTTGCAGATTGTAATCTTTTCGATTTTGGTTGCCCCTATGAATGTATGTGGTGTTCATCTTCAAAGGTTGGAATATGTTTAAGCAGGTCAAAGTTTGCACGGTTTAGTTGGGAGTCCTTTCTACATAGCTCCAGAGGTATTAGCTGGTGCTTATAACCAGGCTGCTGATGTGTGGAGTGCAGGTGTAATTCTTTACATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGGAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATCAAGGGAATGCTGTGTACAGACCCTTCTCGAAGACTCACTGCCCAAGAGGTTTTAGGTAAGTTTACTTTCTTTTTCATCTTGTTAATGTCTATCTGCTGATGTGGTTTTGTTTACATGTAACACTGGTTAAGAGAGCATTTTGGCGAAGCAGGGTAACTACAGTTCAGTTGTGATGTAGATTACTATTGAAAATTGAACATAAAAGGATCATTAGTATCCATTGAATGCGATAACTTAACTGAAGCATTAAGAATATGTTAAAATTATGCTGTAACACTGAAAGGTGTTACTTTTGGTATCAAAACCATCATATTATGTCATTTATGGTGTGCCTGTTCAAAACTCTATTATTTAAGTATATAAGAAAAGAAAGAAATGAAAAAAAAAAATAATTACATTTTTGCTTCTAACATTCATCTCAACTTTCCCTGCTTAGATCATTGCTGGATGGAAAGCAACCAAACAAATCAAGAACAACTTGGTGAAAATCAAATCCAAAGTTGCAAACAATGGGATGTTGGTGGCAGCACATTCTCAGCTTCTTTCATGTCCAGGAATCAGGACATTAGCTTTGGCGCCGGCTCTCCTACTTGTGATGCTCAATCCCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACGCCATGTGTGCTATCTGCCGGGTTTTCATTCAAGAGTGTAGGCGATTCCTCTGGTTTGGAATTCTCTTCTCCAATTCCCTCGATGCTTAGCTTTTCATTCCTCAGTCCCTCTCCTGTCGTTGAACACAAGAGTTGTAAATTAGAGTGTTCAGCTAACATGTCAGATGTAGATGCAATTGCTGGAGGTATGCATTAAAGTCTTTTACAATTTCCTTACTATTTCCTAGCTTCTTGGTCTGATCTTGTTTACAATTTTTTGCAGAAGCTAGCTTGGGAAAGTTACTTTTGCTACAAGATTCTCATCTTTGCATTGAACACGATGCTAAAGAAACGAATCGCAAGCCTGCTGACGCTAAAAGGTCAATTGGAATGAATGGACACAAGGTACTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACTTTGTAGTGACTGAATCAGTCATCCGTTGGTCATCCTGCACTCAACTACCAACATCTTTGAGATCATCTCTCGTTTGCTAAGCGAATAGAAGGAATCGGACTGCTTCATGCTGTGCCAAATATCAGCATAAACCGCAAGTTTTGCTCGGCTAACGTTTTGTACATGTTTTCCTTATTATCTGCGTTGTTGTTCATGTTAACTATCTTCTGGCTGGTGCAAGGTTTTCTTTAGATTTTGGTAGTGGCTTAATGGTGTGTCTGATTGAGAAATGATGCTATAGCAAAAGCTGTTCGCTTGTTTTTCTCCTTCTCCCTTCCCTTGCTATGTGCCTGAGTGAGAAAAAGTCAAAGGCATTCATTCAGCTGTTTTGTAAATGAAGTTGATCTTGATGTATGCTCCAGTTTTCTTAACCTGATGTATTCCAAGTCAACTTGATGTATCAGTCTTGCTGTGTTTGGTTTAGTTTATCACGAAGAAGTAGTTGTGTCTCCAATACTTTTACATGTTAAGTCTGTTTAAATGACTTTGTGGGGTTCAAAAAAACCAAGCTTCTAGGTT