Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16495 LG4 25012147 25013383 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C,* 25012148 splice_region_variant&synonymous_variant p.Leu353Leu
C/T,* 25012164 splice_acceptor_variant&intron_variant
G/*,A 25012166 splice_region_variant&intron_variant
C/G,* 25012177 intron_variant
A/G,* 25012182 intron_variant
C/G,* 25012203 intron_variant
C/A,* 25012204 intron_variant
C/*,T 25012206 intron_variant
A/T,* 25012207 intron_variant
G/A,* 25012211 intron_variant
A/*,T 25012223 intron_variant
T/*,A 25012229 intron_variant
G/T 25012270 missense_variant p.Pro345Gln
G/A 25012279 missense_variant p.Thr342Ile
A/G 25012296 synonymous_variant p.Ser336Ser
A/G 25012298 missense_variant p.Ser336Pro
G/C 25012369 missense_variant p.Ser312Cys
A/T 25012406 missense_variant p.Ser300Thr
T/C 25012421 splice_region_variant&intron_variant
C/T 25012478 intron_variant
T/G 25012491 splice_region_variant&intron_variant
T/C 25012495 splice_region_variant&intron_variant
C/T 25012501 missense_variant p.Gly295Arg
C/T 25012516 missense_variant p.Glu290Lys
G/C 25012519 missense_variant p.Leu289Val
A/G 25012537 synonymous_variant p.Leu283Leu
A/G 25012541 synonymous_variant p.Asp281Asp
C/A 25012546 missense_variant p.Asp280Tyr
G/A,C 25012555 missense_variant p.Leu277Phe
G/A,T 25012557 missense_variant p.Ser276Phe
C/T 25012563 missense_variant p.Gly274Asp
C/A 25012564 missense_variant p.Gly274Cys
C/T,G 25012569 missense_variant p.Arg272Pro
T/C 25012575 missense_variant p.Asp270Gly
C/T,G 25012576 missense_variant p.Asp270His
A/G 25012577 synonymous_variant p.Leu269Leu
T/A 25012581 missense_variant p.Tyr268Phe
A/G 25012583 synonymous_variant p.Leu267Leu
A/G 25012595 synonymous_variant p.Leu263Leu
G/A 25012611 missense_variant p.Ser258Phe
T/C 25012627 missense_variant p.Asn253Asp
T/C 25012639 missense_variant p.Ser249Gly
G/A,C 25012642 missense_variant p.Leu248Val
A/G 25012653 missense_variant p.Val244Ala
A/T 25012673 synonymous_variant p.Ile237Ile
G/A 25012681 missense_variant p.Pro235Ser
T/C 25012687 missense_variant p.Ile233Val
G/T 25012704 missense_variant p.Ser227Tyr
A/G 25012709 synonymous_variant p.Ser225Ser
A/G 25012721 synonymous_variant p.His221His
T/A 25012722 missense_variant p.His221Leu
A/G 25012725 missense_variant p.Ile220Thr
T/G 25012735 missense_variant p.Thr217Pro
C/T,* 25012771 missense_variant p.Gly205Arg
A/G,* 25012777 missense_variant p.Phe203Leu
T/C,A 25012782 missense_variant p.Gln201Leu
G/A 25012783 stop_gained p.Gln201*
A/G 25012785 missense_variant p.Ile200Thr
C/G 25012790 synonymous_variant p.Gly198Gly
C/G 25012806 missense_variant p.Cys193Ser
A/G 25012828 synonymous_variant p.Leu186Leu
A/T 25012838 missense_variant p.Asn182Lys
A/G,* 25012846 missense_variant p.Tyr180His
T/G,* 25012854 missense_variant p.Tyr177Ser
A/T,* 25012859 synonymous_variant p.Ala175Ala
G/T,* 25012860 missense_variant p.Ala175Asp
C/A,* 25012861 missense_variant p.Ala175Ser
C/G 25012872 missense_variant p.Arg171Thr
T/C,A 25012873 stop_gained p.Arg171*
G/T 25012877 missense_variant p.Asp169Glu
C/T 25012879 missense_variant p.Asp169Asn
G/A 25012886 synonymous_variant p.Leu166Leu
T/A 25012907 synonymous_variant p.Ile159Ile
C/T 25012910 synonymous_variant p.Gln158Gln
G/A 25012915 missense_variant p.Pro157Ser
A/G 25012916 synonymous_variant p.Pro156Pro
T/A 25012922 synonymous_variant p.Thr154Thr
T/C 25012924 missense_variant p.Thr154Ala
C/T 25012926 missense_variant p.Gly153Glu
G/C 25012941 missense_variant p.Ser148Cys
A/T 25012942 missense_variant p.Ser148Thr
G/T 25012943 missense_variant p.Phe147Leu
C/A 25013069 missense_variant p.Arg105Ser
A/T 25013072 missense_variant p.Asp104Glu
G/A 25013084 synonymous_variant p.Gly100Gly
A/G 25013092 missense_variant p.Phe98Leu
A/G 25013121 missense_variant p.Val88Ala
C/T 25013122 missense_variant p.Val88Ile
C/T 25013138 synonymous_variant p.Glu82Glu
A/C 25013144 synonymous_variant p.Arg80Arg
C/G 25013160 missense_variant p.Ser75Thr
A/G 25013162 synonymous_variant p.Tyr74Tyr
C/T 25013165 synonymous_variant p.Glu73Glu
T/C 25013170 missense_variant p.Lys72Glu
T/A 25013174 synonymous_variant p.Ala70Ala
C/*,G 25013188 missense_variant p.Val66Leu
T/G,* 25013193 missense_variant p.Glu64Ala
G/A 25013195 synonymous_variant p.Tyr63Tyr
T/C,* 25013214 missense_variant p.Asn57Ser
C/*,T 25013216 synonymous_variant p.Glu56Glu
G/A 25013224 missense_variant p.Leu54Phe
G/A,* 25013232 missense_variant p.Ser51Phe
A/T,* 25013233 missense_variant p.Ser51Thr
G/A 25013235 missense_variant p.Pro50Leu
T/A 25013240 synonymous_variant p.Pro48Pro
G/C 25013260 missense_variant p.Gln42Glu
G/A 25013267 synonymous_variant p.His39His
G/A 25013270 synonymous_variant p.Ser38Ser
A/C 25013272 missense_variant p.Ser38Ala
C/T 25013278 missense_variant p.Val36Ile
G/A 25013282 synonymous_variant p.Asn34Asn
G/C 25013290 missense_variant p.Leu32Val
T/A,* 25013298 missense_variant p.Tyr29Phe
A/C 25013299 missense_variant p.Tyr29Asp
A/G 25013303 synonymous_variant p.His27His
G/T 25013305 missense_variant p.His27Asn
G/A 25013306 synonymous_variant p.Cys26Cys
A/G 25013309 synonymous_variant p.Cys25Cys
A/G 25013312 synonymous_variant p.Asn24Asn
T/C 25013314 missense_variant p.Asn24Asp
G/A 25013315 synonymous_variant p.Pro23Pro
G/A 25013317 missense_variant p.Pro23Ser
T/C 25013320 missense_variant p.Asn22Asp
C/G,T 25013323 missense_variant p.Val21Leu
A/T,* 25013326 missense_variant p.Ser20Thr
A/T,* 25013327 synonymous_variant p.Ala19Ala
G/T,* 25013328 missense_variant p.Ala19Asp
A/T 25013330 missense_variant p.Asn18Lys
A/T 25013339 synonymous_variant p.Ser15Ser
T/C 25013345 synonymous_variant p.Arg13Arg
C/G 25013346 missense_variant p.Arg13Thr
A/G 25013348 synonymous_variant p.Asn12Asn
G/A 25013356 missense_variant p.Pro10Ser
T/A 25013360 synonymous_variant p.Ile8Ile
A/T 25013361 missense_variant p.Ile8Lys
C/T 25013372 synonymous_variant p.Lys4Lys
C/T 25013378 synonymous_variant p.Lys2Lys
T/A 25013383 initiator_codon_variant p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16495.1
MKLKHHLIDPSNRLSSWNASVNPNCCHWYGVLCNNVTSHVAQLHLSTPFPSSSLDENLIDETYEEVYEEAYKEYSRRAFRGEINPCLVDLKHLNYLDFSGNLFDRKPIPSFIATITSLTHLNLSHAGFMGNIPPQIGNLSNLVYLDFSYAANGTIPPQIGNLSNLLHLDLRGYYAEYLFYENVDWLSSLSKLCYLDLGNIQSFGGDMAIPSFLGSMTTLIHLDLSDSGFMGNIPPQIGNLSNLVYLDLSYVVNGTIPSQIGNLSNLLYLDLRSGYSLGNDDWLSSLSKLEYLDLGGCTLPPYNQPSFLNFSTLVTLDLSYFSTISSVPKWVFGLKNLVSLSLHDNHFEVVFLI*


CDS Sequence:
>Vu_16495.1
ATGAAGTTGAAGCATCATCTCATAGATCCTTCAAATAGACTTTCTTCTTGGAATGCTTCTGTCAATCCCAATTGTTGCCATTGGTATGGAGTTCTCTGCAACAACGTCACATCCCACGTTGCACAGCTTCACCTCAGCACTCCATTTCCTTCTTCCTCTCTCGATGAGAACCTGATAGATGAAACTTACGAAGAAGTTTATGAAGAAGCATACAAAGAGTATAGTAGAAGGGCATTCCGTGGAGAGATAAATCCTTGTTTGGTTGATTTGAAGCATTTGAATTACTTGGATTTCAGCGGCAATCTATTTGATAGGAAGCCAATTCCTTCTTTTATTGCAACAATCACTTCCTTAACTCATCTCAACCTCTCTCATGCTGGATTCATGGGGAACATTCCTCCTCAGATTGGAAATCTATCCAATTTAGTCTACCTTGATTTCTCTTATGCTGCCAACGGAACAATTCCTCCTCAGATAGGAAATCTCTCCAACTTGCTCCACCTCGACCTCAGAGGATATTATGCTGAATATCTATTTTATGAAAATGTTGATTGGTTGTCAAGTCTTTCCAAGCTTTGTTATCTTGACTTGGGGAACATTCAGTCATTTGGAGGAGACATGGCAATTCCTTCTTTTCTTGGCTCAATGACCACTTTAATTCATTTGGACCTCTCTGATTCTGGATTTATGGGCAACATTCCTCCCCAGATTGGTAATCTTTCCAATTTGGTGTATCTAGACCTAAGTTATGTTGTCAATGGAACTATTCCCTCTCAAATTGGAAATCTTTCCAACTTGCTTTACCTTGATCTTCGAAGTGGTTATTCTCTTGGAAATGATGATTGGTTGTCAAGTCTTTCAAAACTTGAATATCTTGATTTGGGAGGATGTACACTGCCTCCATACAATCAACCATCCTTTCTTAACTTCTCGACTCTCGTCACTCTTGATCTTTCCTATTTTTCAACAATTTCTTCGGTTCCAAAGTGGGTATTTGGACTGAAAAATCTGGTTTCTCTTTCTTTACATGATAACCACTTTGAAGTAGTTTTCCTAATCTAA


Promoter Sequence:
>Vu_16495::LG4:25013383-25015383(-)
AGTTTATAAAACATTACTATAATTAAATATAACTTTTGCTGTGTGTTCAAATTTTATGAATATTGGTGTTCAAATTTTATGAATTAAAAAAATTGAAATAAAGAGCATAATACTTACCAAAATGAAAATAATGAAAAGAAAAAAAAAAGGATTGGAAGAAGAAAATTGTAACATATAAGTAAACCAAATGACAAAAAGACAGAGAGTTTTGAATGCCAACATTTTGTGTGGACGAACAATTCAAACACTACGATCACTAATGTCTTTATTTCGTCCATTTTCTATGGTAAATGGGTGAACCAATTTTCTAACACGTCAAATACAACAAACACTAATAATTCAAAGTCTCTCTGTCATAATCGTTTTTTTCTTCTACACATGTGAAAAATAGATAGAAGCTTTGAAAAATAAAAATCATAGTAAACCAGAAATGTAAAATCTACACATGCATTTTAAACAAATAACTTTTTAAAACAATTGATAATGAAAACAAAATTTGAAAAAAGAATTAAAAAATATCTTTATAGTTAGGTATTTGTATGAGTTGTATATTTATTATTCTGTCCTACATGTCATACAGTTTAGATTATAAGATATTATTCTGTCCTACATTTATGACTTGGTTATTCTCATAATCGATGTAATAGGATTCTAACATTTCTCTAGAAAGACATGTCTGGTTTTCTAGAATGGGTTGTACTACTTCCATTTTTTTTTCTTTTTATGTTATTTATGTGTTTAATTTTCTAACTCATGAAATGGACGAGGAGTAAGAAATCCATATAAACTTAAAACACATTTAAAGTGTAGAAAAGATTCAATGAAATTTATAAAAAGAAGAAACAAAAACAAATACCTTTAAAAATGTAGGGAGAGATAATACATTTAATGTGAACTTGAGTGTTTGTTTCTAAAGAGTCTTTGAAAATTGATTTTAATATTAATTTTAAAAAATAATTCTTCGTTGTCTATTAATTAGGGAAGAAATAATAATATCATCAAAATGCTTTAATTTAGTTAATTGTAAAACTATTTTGATTGAATAATGTTAAGTTGTTTAAATATATGATTCTCGTCGATTTCATTCATACATTTTCATATAATATGTTTTTATGTCAAGTTTTAGTCTGTTACACTGCCTCCTTAATATATTTTAAGGATTGTTAACAACTATTTTTAATAACTTTTTTACAACGTATCTACGTGGCTCGTGTTATCACTTTATTGATCAGCTTGAATTTAATTTTAGAAAAATATTTAAAACAAATCAATCACAAATTATTACATATACATGTTCTCAAAATGTTATAAAAAAAATTGTTAGAAGAACTTTTTTTCATGTTTTAATTCACCCGGCTATTCTAAAATAATAAAAAATAATCGCTGTTGTGAAGTAATAGTTAAAAAAGAATGAGTCAACCAATGAGTTGGTTTTTTTATAGCCAAGGTCTCTCAAATTTTGAATACATTATTTTAATTGAATAAAGTTAACAACTTATTTAAATATGTGATTCTCATTTACATTTCCATATAGTACATTACATGAGAAAAATCAACATCTCGATTTCTAATGGATTTGACTTTAAAAGTCTTTTGATTTGAATTTCTGCATTTCCTTCCCCCCATGTGCTAATTTCATAATTCATAAATTGGGTTGGACTACTTCCATTTTTTTAAATTGACAGATTTGGAATAGAATATACAAAATATGTTACCCTTCTCACAAGTCAATTTGATTTTATACTTTTAGTGTAAAAAAATTTATTTGTTAAATAGATAACGTATGTATTTTTCCTACTTGTTAAAATTGATAGACAGATGCTTATGCAGAACCCATAACTGCTTCTTTCTAATGAAAACAACACTTTCTTCTTTATATTAGCTTTTGTGTAAAAATGACTTCCTCCTTTTTCATCCTTCTGTTTCTTTATTCACTTTCTATGTCAACCTTTGGTATGTGCAGAGGGACAGTGTGCATTGGAAGTGAGAGAGAGACACTG


Gene Sequence:
>Vu_16495(-)
ATGAAGTTGAAGCATCATCTCATAGATCCTTCAAATAGACTTTCTTCTTGGAATGCTTCTGTCAATCCCAATTGTTGCCATTGGTATGGAGTTCTCTGCAACAACGTCACATCCCACGTTGCACAGCTTCACCTCAGCACTCCATTTCCTTCTTCCTCTCTCGATGAGAACCTGATAGATGAAACTTACGAAGAAGTTTATGAAGAAGCATACAAAGAGTATAGTAGAAGGGCATTCCGTGGAGAGATAAATCCTTGTTTGGTTGATTTGAAGCATTTGAATTACTTGGATTTCAGCGGCAATCTATTTGATAGGAAGCCAATTCCTTCTTTTATTGCAACAATCACTTCCTTAACTCATCTCAACCTCTCTCATGCTGGATTCATGGGGAACATTCCTCCTCAGATTGGAAATCTATCCAATTTAGTCTACCTTGATTTCTCTTATGCTGCCAACGGAACAATTCCTCCTCAGATAGGAAATCTCTCCAACTTGCTCCACCTCGACCTCAGAGGATATTATGCTGAATATCTATTTTATGAAAATGTTGATTGGTTGTCAAGTCTTTCCAAGCTTTGTTATCTTGACTTGGGGAACATTCAGTCATTTGGAGGAGACATGGCAATTCCTTCTTTTCTTGGCTCAATGACCACTTTAATTCATTTGGACCTCTCTGATTCTGGATTTATGGGCAACATTCCTCCCCAGATTGGTAATCTTTCCAATTTGGTGTATCTAGACCTAAGTTATGTTGTCAATGGAACTATTCCCTCTCAAATTGGAAATCTTTCCAACTTGCTTTACCTTGATCTTCGAAGTGGTTATTCTCTTGGAAATGATGATTGGTTGTCAAGTCTTTCAAAACTTGAATATCTTGATTTGGGAGGTACAAACCTATCCCAATCGTTTGATTTTTCCCACATTCTGCAAGCTCTTTCTTCTTTGATGCACCTACAATTGTCAGGATGTACACTGCCTCCATACAATCAACCATCCTTTCTTAACTTCTCGACTCTCGTCACTCTTGATCTTTCCTATTTTTCAACAATTTCTTCGGTTCCAAAGTGGGTATTTGGACTGAAAAATCTGGTTTCTCTTTCTTTACATGATAACCACTTTGAAGGTCCAATTCCTTATGGACTTCAAAACCTCACACTACTTGAAAATCTTAACTTGTGTGGAAATTCATTCTCATATTCTATACCTGATTGGTTTTACAGTAGTTTTCCTAATCTAA