Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16490 LG4 24867022 24867972 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 24867023 missense_variant&splice_region_variant p.Met227Ile
T/C 24867025 missense_variant p.Met227Val
A/G 24867033 missense_variant p.Leu224Pro
T/C,G 24867044 splice_region_variant&intron_variant
T/C 24867045 splice_region_variant&intron_variant
A/C,T 24867051 intron_variant
A/G 24867085 intron_variant
C/T 24867094 intron_variant
T/C,G 24867108 intron_variant
T/G,C 24867113 intron_variant
G/C 24867114 intron_variant
C/A,T 24867119 intron_variant
C/T 24867135 intron_variant
C/A 24867148 intron_variant
A/T 24867169 intron_variant
G/A 24867172 intron_variant
A/C 24867175 intron_variant
A/G 24867186 intron_variant
G/A 24867197 intron_variant
C/A 24867249 intron_variant
G/A 24867283 intron_variant
A/T 24867307 splice_donor_variant&intron_variant
T/C 24867312 missense_variant p.Arg221Gly
G/A 24867324 missense_variant p.Arg217Trp
T/G 24867327 missense_variant p.Thr216Pro
T/C 24867330 missense_variant p.Asn215Asp
C/T 24867333 missense_variant p.Gly214Ser
T/G,C 24867337 missense_variant p.Gln212His
G/C 24867339 missense_variant p.Gln212Glu
C/G 24867347 missense_variant p.Cys209Ser
G/A 24867355 synonymous_variant p.Ser206Ser
A/G 24867369 synonymous_variant p.Leu202Leu
A/T 24867379 missense_variant p.Asn198Lys
C/A 24867384 stop_gained p.Glu197*
A/G 24867387 missense_variant p.Tyr196His
A/T 24867388 missense_variant p.Phe195Leu
G/T 24867395 missense_variant p.Ser193Tyr
A/T,* 24867400 missense_variant p.Asp191Glu
T/C,* 24867404 missense_variant p.Asp190Gly
C/G,* 24867405 missense_variant p.Asp190His
T/A 24867407 missense_variant p.Tyr189Phe
C/T 24867413 missense_variant p.Gly187Glu
G/A 24867421 synonymous_variant p.Leu184Leu
T/G 24867424 missense_variant p.Glu183Asp
C/G 24867426 missense_variant p.Glu183Gln
G/A 24867445 synonymous_variant p.Leu176Leu
C/T 24867451 synonymous_variant p.Gly174Gly
T/A,* 24867456 missense_variant p.Ile173Leu
C/T,* 24867457 synonymous_variant p.Gln172Gln
G/A,* 24867460 synonymous_variant p.Ser171Ser
A/G,* 24867462 missense_variant p.Ser171Pro
A/G,* 24867463 synonymous_variant p.Pro170Pro
T/C,* 24867469 synonymous_variant p.Thr168Thr
G/C,* 24867470 missense_variant p.Thr168Arg
C/T,* 24867476 missense_variant p.Ser166Asn
G/A,* 24867482 missense_variant p.Ala164Val
G/T,* 24867488 missense_variant p.Ser162Tyr
G/A,* 24867490 synonymous_variant p.Leu161Leu
G/A,* 24867499 synonymous_variant p.Tyr158Tyr
C/G,* 24867502 missense_variant p.Leu157Phe
A/G,C 24867504 missense_variant p.Leu157Val
T/C,* 24867505 synonymous_variant p.Leu156Leu
G/T,* 24867511 synonymous_variant p.Ser154Ser
C/A 24867526 missense_variant p.Gln149His
A/T 24867529 synonymous_variant p.Pro148Pro
T/G 24867537 missense_variant p.Ile146Leu
C/T 24867541 synonymous_variant p.Gly144Gly
T/C 24867546 missense_variant p.Met143Val
T/A,* 24867556 missense_variant p.Glu139Asp
C/T,G 24867558 missense_variant p.Glu139Gln
C/T 24867594 missense_variant p.Ala127Thr
A/T 24867601 synonymous_variant p.Ser124Ser
A/C 24867604 synonymous_variant p.Pro123Pro
T/A 24867609 missense_variant p.Ile122Phe
C/A 24867613 missense_variant p.Lys120Asn
T/C 24867620 missense_variant p.Asp118Gly
C/G 24867621 missense_variant p.Asp118His
T/A 24867625 synonymous_variant p.Leu116Leu
A/T 24867626 missense_variant p.Leu116Gln
C/T 24867632 missense_variant p.Gly114Asp
C/A 24867633 missense_variant p.Gly114Cys
C/A 24867661 missense_variant p.Leu104Phe
T/A 24867688 synonymous_variant p.Gly95Gly
T/C 24867697 synonymous_variant p.Ala92Ala
T/A 24867720 missense_variant p.Arg85Trp
T/A,G 24867722 missense_variant p.Glu84Val
C/A 24867734 missense_variant p.Gly80Val
C/G 24867735 missense_variant p.Gly80Arg
C/T,A 24867743 missense_variant p.Gly77Val
A/C 24867749 missense_variant p.Ile75Ser
T/C,A 24867751 missense_variant p.Glu74Asp
T/A 24867755 missense_variant p.Asp73Val
C/T 24867756 missense_variant p.Asp73Asn
A/C 24867763 synonymous_variant p.Pro70Pro
G/A 24867768 missense_variant p.Leu69Phe
T/A 24867769 synonymous_variant p.Pro68Pro
T/G,C 24867776 missense_variant p.Asn66Ser
A/G 24867796 synonymous_variant p.His59His
A/G 24867799 synonymous_variant p.Ser58Ser
C/T,A 24867807 missense_variant p.Val56Phe
G/T 24867817 synonymous_variant p.Leu52Leu
G/C 24867819 missense_variant p.Leu52Val
A/C 24867828 missense_variant p.Tyr49Asp
A/G 24867832 synonymous_variant p.His47His
T/C 24867848 missense_variant p.Asn42Ser
G/A 24867869 missense_variant p.Ser35Phe
C/G 24867875 missense_variant p.Arg33Thr
G/A 24867892 synonymous_variant p.Leu27Leu
G/T,* 24867894 missense_variant p.Leu27Ile
T/G 24867897 missense_variant p.Asn26His
C/T 24867901 synonymous_variant p.Lys24Lys
A/T,G 24867912 missense_variant p.Leu21Met
G/A 24867915 synonymous_variant p.Leu20Leu
T/A 24867916 synonymous_variant p.Thr19Thr
T/A 24867918 missense_variant p.Thr19Ser
C/A 24867925 missense_variant p.Glu16Asp
C/T 24867932 missense_variant p.Gly14Glu
T/A 24867936 missense_variant p.Ile13Phe
A/G 24867937 synonymous_variant p.Cys12Cys
T/G,C 24867943 synonymous_variant p.Thr10Thr
C/T,* 24867947 missense_variant p.Gly9Glu
T/C 24867951 missense_variant p.Arg8Gly
C/A 24867953 missense_variant p.Cys7Phe
G/A 24867961 synonymous_variant p.Phe4Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16490.1
MSTFGVCRGTVCIGSERETLLKLKHNLIDPSNRLSSWNASLNPNCCHWYGVLCNNVTSHVAELHLNTPLPLYDEILGDYGYEEEREEYSRQALSGEINPCLVDLKHLNYLDFSGNLFDRKPIPSFIATMTSLTHLNLSEAGFMGNIPPQIGNLSNLLYLDLSYAASGTIPSQIGNLSNLLHLELSGGYYDDESLFYENVDWLSSLSKLCYLQLGNTRSLRRGANLSQ*


CDS Sequence:
>Vu_16490.1
ATGTCAACCTTCGGTGTGTGCAGAGGGACAGTGTGTATTGGAAGTGAGAGAGAGACACTGTTGAAGTTGAAGCATAATCTCATTGATCCTTCAAATAGACTTTCTTCTTGGAATGCTTCTCTCAATCCCAATTGTTGCCATTGGTATGGAGTTCTCTGCAACAACGTCACATCTCATGTTGCAGAGCTTCACCTCAACACTCCACTTCCTCTTTACGATGAAATCCTAGGTGATTATGGTTATGAAGAAGAAAGGGAAGAGTATAGTAGACAAGCATTAAGTGGAGAGATAAATCCTTGTTTGGTTGATTTGAAGCATTTGAATTACTTGGATTTCAGCGGCAATCTATTTGATAGGAAGCCAATTCCTTCTTTCATTGCAACAATGACTTCCTTAACTCACCTCAACCTTTCTGAAGCTGGATTCATGGGGAACATTCCTCCTCAGATTGGAAATCTCTCCAATTTATTGTACCTTGACCTCTCTTATGCTGCCAGCGGAACAATTCCTTCCCAGATAGGGAATCTCTCCAACTTGCTCCACCTCGAACTCAGCGGAGGATATTATGATGATGAATCTCTATTTTATGAAAATGTTGATTGGTTGTCAAGTCTTTCCAAGCTTTGTTATCTTCAATTGGGCAACACTCGGTCACTTAGAAGAGGTGCAAACTTATCCCAATGA


Promoter Sequence:
>Vu_16490::LG4:24867972-24869972(-)
TCACAATATTACATTTTATTCATATGAACATGTTACTTTTGTTTATAATATTTTTAAGTTTAACTTTATTTTTCTAATGCAATATATCCAATACCTTTTTAATATTTATGTGTTTTAAGTTATTTATATCTACATGTTTTTCTATTTAAAAATTTAAACATTAATTTCGTGTTGTATTTATTTTGTACTGATCATATTATACAATATGCATACATTCTACTTTAATAATGACTCATGCACACGCATTTTATTTTAATATAATATATAACACAAAAGCTTAATATTAAATTTCAATTTATATAATAATATTGTTTTACTATACATGACCAAAATCAATTATTGTCAATTTTATAATTTAAAACCAACATATTCATATCGAGATATTATTTTTTAATATTTGTTTTCTATTATTATGATGTGTTATCTACATATTTAAATTTATAACACTTAAATATAATTATTTAAACAAATTATATATTTAAATATAATAAGAATTATATTAATTTTCTCAATACAAGTTTCTTTTTAAAAAAGGTCCAGACTAGGTGATAATGAAAACAAAAGTTGTATAAAAGAAAAAAAAAATCTTTATCAATTTGGGTTTTGTGTGACTTGTATATTTATTCTTCTTTACCATAGCTTATAAATAAAGCTTCAAATGTGATGGGTTGGCCTAACAATGATATTGGAGTGAGTGTGAAGTGAATGGCTAAGACTGAGTCAAACAATGAATTGGATATTTATAATCAAACTCTTTAAAATTTTATAAAAAAAAAAAAATTAGCAAATACCTTTAGAAATGTAGGCAGAGATTATACATTCAGTGTGAACTTGACTGTTTATAAACAGTCTTTAAAATAAATTTTAATATTATTTTTAAAAAATAATTCGGCAATTAATTAGAAGAAATCAAGTTAAATAAAATAATATCATAAAAAGTGATTTAAGAAGTTAGTTAATTGTAAAATTATTTTGATTGAATAAAGTTAACTTGTTTAAATATATGTTCTCGTTTTTTTCTTTCATACATTTTAATAAAATAGATTACATGAGAAAAACAAATATATTTGATTTTATTTTCTGCATTATTTTTGTTTTCGGAATATCCTAATTTTGATAACTCATAAAATGGGTTGGACTACAATTTTTTTTCTTTCTTATCTTTCGAGTGTGCTTAATTTTCTAACTTATAATATGACAAAAAAAAAGAGACTTTTGAATGCCAACATTTTTGTGTGGTCGTAAAATTGAAACAACCCTTTCATACTTTTTTTTAGCACTTAAATTGCGTTGCATATGCTCTTTTAAATTCACAGATTTAAAAAGAATATACAAAATGTTACTCGTTTACACAAAAATAGATAGCGTATGCATTTTCCTACTTGAGGAATGGATTTTGATGTGCTGATAATGTTTTCATAAAAAGACATTTGACCCCAAATAATGGGATCTTAGTAAACTAAGTTTATTTTACGTAAGTACTTACAAAAAAAGTTATACCAAAACTCAAAGTCTTAACTAATCTTTTGACAAAATTACTAATTTAGGTCTCTTTCTTTGAGATTTAATCACTCAAATAAAATTCTTTTACTCTTAGATATTTTGATTAGTTGTATATTTATCTTCTTTCCTATCGCATAGAATTTGATTTTATAAATTTAGCATGGAAATTAAAATTGATAGAGAGATGGCTATGTGTATATATATATATATAGGAAAATGACACTTGAACAACCATTTTTGACAACATTTAGACACGCGCACACGTGTCAAAATCTGAGTGGTCCATTTTCATTTAATTTTTCCAACTGGACCACTCAGATTTTGACACGTGTACGCGTGTCTAAATGTTGTCAAAAATGGTTGTTCAAGTATCATTTTCCATATATATAAAGGGTATTTAGTATGCATAACCCATAACTGCTTCTTTCTTTCTTCTTTGCTTTTGTTTAAAAATGACTTCCTCCTTTTTCATCCTTCTCTTTCTTTATTCGCTTTCT


Gene Sequence:
>Vu_16490(-)
ATGTCAACCTTCGGTGTGTGCAGAGGGACAGTGTGTATTGGAAGTGAGAGAGAGACACTGTTGAAGTTGAAGCATAATCTCATTGATCCTTCAAATAGACTTTCTTCTTGGAATGCTTCTCTCAATCCCAATTGTTGCCATTGGTATGGAGTTCTCTGCAACAACGTCACATCTCATGTTGCAGAGCTTCACCTCAACACTCCACTTCCTCTTTACGATGAAATCCTAGGTGATTATGGTTATGAAGAAGAAAGGGAAGAGTATAGTAGACAAGCATTAAGTGGAGAGATAAATCCTTGTTTGGTTGATTTGAAGCATTTGAATTACTTGGATTTCAGCGGCAATCTATTTGATAGGAAGCCAATTCCTTCTTTCATTGCAACAATGACTTCCTTAACTCACCTCAACCTTTCTGAAGCTGGATTCATGGGGAACATTCCTCCTCAGATTGGAAATCTCTCCAATTTATTGTACCTTGACCTCTCTTATGCTGCCAGCGGAACAATTCCTTCCCAGATAGGGAATCTCTCCAACTTGCTCCACCTCGAACTCAGCGGAGGATATTATGATGATGAATCTCTATTTTATGAAAATGTTGATTGGTTGTCAAGTCTTTCCAAGCTTTGTTATCTTCAATTGGGCAACACTCGGTCACTTAGAAGAGGTATGCCAATTCCTTCTTTTCTTGGCTCAATGACCAACTTAATTCACTTGGACCTCTATGCTGGATTTATGGGCAACATTCCTCCCCAGATTGGTAATCTTTCCAATTTGGCGTATCTAGACTTAAGTTATGCTGCCAATGGAACTATTCCCTCTCAAATGGGAAATCTCTCCGACTTGCTTTACCTTCGTCTTCAAGGTAATTATTTTGTTGGGAATGATGATTGGTTGTCAAGTCTTTCAAAACTTGAATATCTTTATTTGAAAGGTGCAAACTTATCCCAATGA