Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16489 LG4 24834504 24835449 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 24834519 missense_variant p.Lys129Asn
G/C 24834566 splice_region_variant&intron_variant
C/T 24834567 splice_region_variant&intron_variant
A/G 24834607 intron_variant
C/T 24834616 intron_variant
C/T 24834621 intron_variant
C/G,A 24834630 intron_variant
C/T 24834633 intron_variant
C/G 24834635 intron_variant
C/G 24834636 intron_variant
T/C 24834641 intron_variant
G/C 24834642 intron_variant
A/G 24834644 intron_variant
C/A 24834670 intron_variant
T/A 24834674 intron_variant
G/A 24834677 intron_variant
G/A 24834681 intron_variant
G/A 24834695 intron_variant
A/C 24834718 intron_variant
T/A,C 24834739 intron_variant
G/A,T 24834747 intron_variant
A/C 24834761 intron_variant
G/T 24834770 intron_variant
A/C,G 24834774 intron_variant
A/G 24834775 intron_variant
G/T,A 24834778 intron_variant
G/A 24834781 intron_variant
A/G 24834791 intron_variant
T/G 24834797 intron_variant
G/A 24834808 intron_variant
T/C 24834837 missense_variant p.Arg114Gly
A/G 24834849 missense_variant p.Trp110Arg
G/A 24834851 missense_variant p.Thr109Ile
T/C,G 24834852 missense_variant p.Thr109Ala
T/C 24834855 missense_variant p.Asn108Asp
T/G,C 24834862 missense_variant p.Gln105His
G/C 24834864 missense_variant p.Gln105Glu
C/G 24834872 missense_variant p.Cys102Ser
A/T 24834873 missense_variant p.Cys102Ser
G/A 24834880 synonymous_variant p.Ser99Ser
G/A 24834894 intron_variant
A/T 24834904 intron_variant
A/T,* 24834913 intron_variant
T/G,* 24834918 intron_variant
G/T,* 24834920 intron_variant
T/A 24834925 intron_variant
C/T 24834927 intron_variant
G/T,* 24834932 intron_variant
C/G,* 24834943 intron_variant
G/T 24834949 intron_variant
G/C 24834951 intron_variant
A/G 24834980 intron_variant
A/T 24834991 intron_variant
C/T 24835002 intron_variant
G/A 24835012 intron_variant
T/C 24835045 intron_variant
A/T 24835048 intron_variant
C/T 24835080 intron_variant
A/T 24835082 intron_variant
G/C 24835083 intron_variant
G/T 24835089 intron_variant
G/T,C 24835122 intron_variant
A/T 24835129 intron_variant
A/G 24835133 intron_variant
A/C 24835139 intron_variant
A/T 24835141 intron_variant
A/T 24835150 splice_region_variant&intron_variant
G/T 24835152 splice_region_variant&intron_variant
A/G,* 24835156 splice_donor_variant&intron_variant
G/A 24835182 missense_variant p.His90Tyr
C/T 24835183 synonymous_variant p.Lys89Lys
T/C 24835205 missense_variant p.Asn82Ser
C/T 24835210 synonymous_variant p.Glu80Glu
T/C,G 24835218 missense_variant p.Ser78Gly
G/A 24835219 synonymous_variant p.Phe77Phe
T/G 24835227 synonymous_variant p.Arg75Arg
T/C 24835232 missense_variant p.Asn73Ser
T/A 24835233 missense_variant p.Asn73Tyr
C/T 24835239 missense_variant p.Glu71Lys
C/A,* 24835243 missense_variant p.Met69Ile
G/T 24835252 missense_variant p.Asp66Glu
C/G,* 24835269 missense_variant p.Asp61His
G/C,* 24835279 synonymous_variant p.Gly57Gly
C/T 24835286 missense_variant p.Ser55Asn
C/A 24835288 missense_variant p.Glu54Asp
C/T 24835293 missense_variant p.Asp53Asn
A/C 24835304 missense_variant p.Leu49Arg
G/A 24835307 missense_variant p.Pro48Leu
C/G,T 24835313 missense_variant p.Ser46Thr
A/G 24835318 synonymous_variant p.His44His
T/G 24835323 missense_variant p.Ile43Leu
A/G 24835328 missense_variant p.Val41Ala
A/C 24835338 missense_variant p.Ser38Ala
A/T 24835344 missense_variant p.Phe36Ile
G/C 24835348 missense_variant p.Asn34Lys
T/C 24835349 missense_variant p.Asn34Ser
T/C 24835376 missense_variant p.Tyr25Cys
C/G 24835412 missense_variant p.Gly13Ala
C/T 24835413 missense_variant p.Gly13Arg
G/A 24835429 synonymous_variant p.Leu7Leu
C/T 24835438 synonymous_variant p.Lys4Lys
T/A 24835449 initiator_codon_variant p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16489.1
MKLKHHLIDPSNGLSSWNASLNPNYCHWYGVVCNNFTSHVVEIHLSTPLPLYDESLGYPLDEIVYDEAMEEYNRRAFSGEINPCLVDLKHLNYLDLSVFPSFVIFNWATLGHLEEVQTYPNHLIFLTFCKLFLL*


CDS Sequence:
>Vu_16489.1
ATGAAGTTGAAGCATCATCTCATTGATCCTTCAAATGGACTTTCTTCTTGGAATGCTTCTCTCAATCCCAATTATTGCCATTGGTATGGAGTTGTATGCAACAACTTCACATCCCACGTTGTAGAGATTCATCTCAGCACTCCACTTCCTCTTTACGATGAGAGCCTAGGCTATCCATTGGATGAAATAGTTTATGACGAAGCAATGGAAGAGTATAATAGAAGGGCATTCAGTGGAGAGATAAATCCTTGTTTGGTTGATTTGAAGCATTTGAATTACTTGGATCTCAGCGTCTTTCCAAGCTTTGTTATCTTCAATTGGGCAACACTTGGTCACTTAGAAGAGGTGCAAACTTATCCCAATCATTTGATTTTTCTTACATTCTGCAAGCTCTTCCTTCTTTGA


Promoter Sequence:
>Vu_16489::LG4:24835449-24837449(-)
ATTATCAGAAAACTTATATATTTTTCATGGTTTTTTGTAGAAAATATACAGGAACAATTCAAAGAGTTTGAAAAATTCTTGTACTGATGATTTAAGAAATTATTTTAAACGCATAAGACATTGAGTTTTTACTCCTTGTCTTCTGCGTACTTCTAAACCATCAAATGCAAAAGGGACTGTAAGTGGCACTTGGCAAGAATATCAATGTTCTCACATAGTAGCATATTTTGAAAAATTATTCAATACCTGTAAAATCATTGAAAACATTATATATTTTTTGAAATAATTGAAATGAAAGACCATTACCAGAAACTCCCTCCTCTTAAATCCCAATGTTATTGATTAATCTTAATATACAGATTTTTCTTATTCCATATGCATGCCTATACCTTTCAATATATCTCTGTCTTTTAAGTCATCTACATCTACATTGCTTCTTTTACAAATTTTAACATCAAGTTGTTTTTATTTTATGCGGAATCATATTTCATAATATATCTACATTTTTACTTTAAGAATGATTGGTGTATATGCATTTCATTTTAATATAATATATAACTCAACTCTAATTATAAATTTTTTTAATCTTATAAAAATATTATTTTACTATACATCACTAATAAATTATTATGTTAAATTTATATTGTAATACAAACAAATTGATAGTCAAATGCATAATTCCAAACAAAAAAACATGTAAGTACGCATTAATAATTAATTATCACAGTGTCAATGTTTATATTGACAACAATATACGCATGTATTTCTGTTTAAAATTTTTAACCTTATGTTACTCTAATTTTTTTTTAATAGGGATTACATTTCACAATATTACATTTTATTCATATGAACATGTTACTTTTGTTTATAATATTTTTAAGTTTAACTTTATTTTTCTAATGCAATATATCCAATACCTTTTTAATATTTATGTGTTTTAAGTTATTTATATCTACATGTTTTTCTATTTAAAAATTTAAACATTAATTTCGTGTTGTATTTATTTTGTACTGATCATATTATACAATATGCATACATTCTACTTTAATAATGACTCATGCACACGCATTTTATTTTAATATAATATATAACACAAAAGCTTAATATTAAATTTTAATTTACTATACATGACCAAAATCAATTATTCTGTCAATTTTATAATTTAAAACCAACATATTCATATCGAGATATTATTTTTTAATATTTGTTTTCTATTATTATTATGTGTTATCTACATATTTAAATTTATAACACTTAAATATAATTATTTAAACAAATTATATATTTAAATATAATAAGAATTATATTAATTTTCTCAATACAAATTTCTTTTTAAAAAAGGTCCAGACTAGGTGATAATGAAAACAAAAGTTGTATAAAAGAAAAAAAAAATCTTTATCAATTAGGGTTTTGTGTGACTTGTATATTTATTCTTCTTTACTATAGCTTATAAATAAAGCTTCAAATGTGATGGGTTGGCCTAACAATGATATTGGAGTGAGTGTGAAGTGAATGGCTAAGACTGAGTCAAACAATGAATTGGATATTTAAATCAAACTCTTTAAAATTTTCTAACTTATAATATGACAGAAAAAAGAGACTTTTGAATGCCAACATTTTTGTGTGGACGTACAATTGAAACAACCCTTTCATACTTTTTTTTAGCACTTAAATTGCGTTGCATATGCTCTTTTAAATTCACAGATTTAAAAAGAATATACAAAATGTCACAGATAAAATATGAAAATGACTTTGACAGCTGAATTTGATTTTATAAATTTAGCATGGAAATTAAAATTGATAGAGAGATGGTAATTATGTGTATATATATAAAGGGTATTTAGTATGCATAACCCATAACTGCTTCTTTCTTTCTTCTTTGCTTTTGTTTAAAAATGACTTCCTCCTTTTTCATCCTTCTCTTTCTTTATTCGCTTTCTATGTCAACTTTTGGTGTGTGCAGAGAGACAGTGTGCATTGGAAGTGAGAGAGAGACTCTG


Gene Sequence:
>Vu_16489(-)
ATGAAGTTGAAGCATCATCTCATTGATCCTTCAAATGGACTTTCTTCTTGGAATGCTTCTCTCAATCCCAATTATTGCCATTGGTATGGAGTTGTATGCAACAACTTCACATCCCACGTTGTAGAGATTCATCTCAGCACTCCACTTCCTCTTTACGATGAGAGCCTAGGCTATCCATTGGATGAAATAGTTTATGACGAAGCAATGGAAGAGTATAATAGAAGGGCATTCAGTGGAGAGATAAATCCTTGTTTGGTTGATTTGAAGCATTTGAATTACTTGGATCTCAGCGGTAATCTTTTTTATGATGTACCAATGCCTTCCTTCCTTGCAACAATGACTTCCTTAACTCACCTCAACCTTTCTCTTGCTGGATTCATGGGAAACATTCCTCCTCAGATTGGAAATCTCTCCAATTTGGTGTACCTTGACCTCTCCTATGCTGCCGACGGAAGAATTCCTCCTCAGATAGGGAATCTCTCCAACTTGCTCCACCTCCACCTCAGGGGAGGATATTCTGATGAAGAATCTATATTTTATGAAAATGTTGATTGGCTGTCAAGTCTTTCCAAGCTTTGTTATCTTCAATTGGGCAACACTTGGTCACTTAGAAGAGGTATGCCAATTCCTTCTTTTCTTGGCTCAATGACCAACTTAATTCACTTGGACCTCTCTTATTCTGGATTTATGGGCAACATTCCTCCCCAGATAGGTAATCTTTCCAATTTGGCTTATCTAGACTTAAGTTATGCTGCCAATGGAACTATTCCCTCTCAAATGGGAAATCTCTCCAACTTGCTTTATCTTCATCTTGGAGGTGATTATTTTGTTGGGAATGATGATTGGTTGTCAAGTCTTTCAAAACTTGAATATCTTGATTTGGCAGGTGCAAACTTATCCCAATCATTTGATTTTTCTTACATTCTGCAAGCTCTTCCTTCTTTGA