Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16486 LG4 24787160 24789961 PREDICTED: receptor-like protein kinase
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 24787189 missense_variant p.Trp284Leu
C/T 24787193 missense_variant p.Asp283Asn
C/A 24787214 stop_gained p.Glu276*
C/A 24787225 missense_variant p.Gly272Val
G/A 24787248 synonymous_variant p.Asp264Asp
G/A 24787349 stop_gained p.Gln231*
A/T 24787360 stop_gained p.Leu227*
A/G 24787367 stop_lost p.Ter225Argext*?
C/T 24787480 missense_variant p.Cys187Tyr
G/C 24787678 missense_variant p.Pro121Arg
G/A 24787688 missense_variant p.Arg118Trp
T/C 24787698 synonymous_variant p.Gln114Gln
A/G 24787711 missense_variant p.Leu110Pro
C/A 24787772 stop_gained p.Glu90*
T/A 24787790 stop_gained p.Arg84*
C/T 24787792 missense_variant p.Arg83Lys
C/G,* 24787804 missense_variant p.Ser79Thr
A/C 24787810 missense_variant&splice_region_variant p.Val77Gly
C/T,* 24787818 splice_region_variant&intron_variant
C/T,* 24787821 intron_variant
G/C 24787822 intron_variant
G/T 24787826 intron_variant
T/A,* 24787830 intron_variant
C/T 24787831 intron_variant
T/C,* 24787834 intron_variant
A/C,* 24787839 intron_variant
G/C 24787843 intron_variant
G/C 24787845 intron_variant
A/G 24787846 intron_variant
G/T,* 24787851 intron_variant
C/A,* 24787854 intron_variant
A/C 24787858 intron_variant
G/T 24787861 intron_variant
A/T 24787863 intron_variant
C/A 24787867 intron_variant
T/A 24787868 intron_variant
A/G 24787869 intron_variant
A/C 24787877 intron_variant
C/T 24787878 intron_variant
C/T 24787890 intron_variant
T/C 24787909 intron_variant
T/G 24787953 intron_variant
A/C 24787955 intron_variant
G/A 24787956 intron_variant
T/A 24787968 intron_variant
A/G 24787984 intron_variant
A/G 24787994 intron_variant
G/T 24788063 intron_variant
T/C 24788114 intron_variant
A/T 24788137 intron_variant
G/A 24788140 intron_variant
G/A 24788143 intron_variant
T/C 24788148 intron_variant
G/A 24788151 intron_variant
G/A 24788185 intron_variant
C/G 24788197 intron_variant
T/C 24788278 intron_variant
G/A 24788285 intron_variant
T/C,* 24788335 missense_variant p.Ser63Gly
A/*,T 24788356 missense_variant p.Trp56Arg
C/T,* 24788361 missense_variant p.Arg54Gln
G/A,* 24788362 missense_variant p.Arg54Trp
T/C,* 24788368 missense_variant p.Lys52Glu
C/T,* 24788381 synonymous_variant p.Glu47Glu
A/G,* 24788388 missense_variant p.Met45Thr
G/T,* 24788391 missense_variant p.Thr44Lys
T/C,* 24788403 missense_variant p.Gln40Arg
A/G,* 24788407 stop_lost p.Ter39Argext*?
C/A,* 24788412 missense_variant p.Gly37Val
C/T,* 24788417 synonymous_variant p.Ala35Ala
A/T,C 24788422 missense_variant p.Ser34Ala
T/A 24788428 missense_variant p.Arg32Trp
A/G 24788434 missense_variant p.Trp30Arg
G/T 24788437 synonymous_variant p.Arg29Arg
T/G 24788440 missense_variant p.Lys28Gln
C/T 24788441 synonymous_variant p.Gly27Gly
G/A,* 24788453 synonymous_variant p.Ser23Ser
C/T 24788480 synonymous_variant p.Val14Val
C/T 24788485 missense_variant p.Ala13Thr
C/T 24788490 missense_variant p.Arg11Lys
C/T 24788495 stop_gained p.Trp9*
G/A 24788500 missense_variant&splice_region_variant p.Arg8Trp
C/T 24788521 intron_variant
A/G 24788528 intron_variant
A/C 24788547 intron_variant
T/C 24788824 intron_variant
C/T 24789000 intron_variant
T/G 24789053 intron_variant
G/C 24789057 intron_variant
T/G 24789069 intron_variant
A/T,C 24789097 intron_variant
T/A 24789112 intron_variant
C/T 24789121 intron_variant
A/T 24789171 intron_variant
T/A 24789243 intron_variant
A/C 24789246 intron_variant
A/T 24789288 intron_variant
A/T 24789289 intron_variant
C/T 24789294 intron_variant
T/G 24789295 intron_variant
A/T 24789305 intron_variant
T/C 24789311 intron_variant
T/A 24789333 intron_variant
T/A 24789353 intron_variant
T/C 24789359 intron_variant
A/T 24789365 intron_variant
G/A 24789367 intron_variant
C/A 24789370 intron_variant
G/C 24789371 intron_variant
A/T 24789390 intron_variant
A/T 24789395 intron_variant
T/A 24789402 intron_variant
G/T 24789418 intron_variant
G/T 24789437 intron_variant
T/A,* 24789452 intron_variant
C/T 24789463 intron_variant
G/C 24789466 intron_variant
A/T,G 24789474 intron_variant
C/A 24789490 intron_variant
C/G 24789491 intron_variant
C/T 24789496 intron_variant
A/T 24789503 intron_variant
A/G 24789511 intron_variant
C/T 24789563 intron_variant
G/A 24789569 intron_variant
A/G 24789587 intron_variant
T/A 24789622 intron_variant
A/G 24789651 intron_variant
A/C 24789653 intron_variant
A/T 24789770 intron_variant
T/A 24789774 intron_variant
G/A 24789811 intron_variant
G/T 24789930 intron_variant
C/A 24789937 splice_region_variant&intron_variant
A/T 24789958 missense_variant p.Cys2Ser
C/T 24789959 start_lost p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16486.1
MCGVLILTVVEGSGGGENGGRGQRWWREAVVEGIGGRAVTVESNDDGEQRWKAAVVVSSGGGEQRWWRATVVEGSGKLVVYIPEERESFLKLKYHLKHSSNRLSSRNSNRCQWNNITSGEAQLHFSIQFPSSDESVGYPFNEEVFEEALEEGYGGEINPCLVYYFKHFNYLDFRDNLFQTILIPSFIATITSLTHLNLSNAGIIGTLPSQIGNLSDSLYLDLQSDETWFTDNIDWVSSLSKLRYLALSNIWPVGGGMPIPSFVGTMTTLIHLARKRRYANSLSIGKSLQLHIP*


CDS Sequence:
>Vu_16486.1
ATGTGTGGTGTTCTAATTTTAACGGTGGTAGAGGGCAGCGGTGGTGGAGAGAACGGTGGTAGAGGACAGCGGTGGTGGAGGGAAGCGGTGGTGGAGGGCATCGGCGGGAGGGCAGTGACAGTGGAGAGCAACGATGATGGAGAGCAGCGGTGGAAAGCAGCGGTGGTGGTGAGCAGCGGTGGTGGAGAGCAGCGGTGGTGGAGGGCAACGGTGGTGGAGGGCAGCGGCAAGTTAGTAGTGTACATCCCAGAAGAGAGAGAGTCATTTTTGAAGTTAAAGTATCATCTCAAACATTCTTCAAATCGACTTTCTTCTCGGAATTCCAATCGCTGTCAATGGAACAACATTACATCCGGTGAGGCCCAGCTTCACTTTAGCATTCAATTTCCTTCTTCCGATGAGAGTGTAGGTTATCCATTCAACGAAGAAGTTTTCGAAGAAGCATTGGAAGAAGGGTATGGTGGAGAGATAAACCCTTGTTTGGTTTATTATTTTAAGCATTTCAATTACTTAGATTTCAGAGACAATCTTTTTCAAACTATTCTGATCCCTTCTTTCATTGCAACAATCACTTCCTTAACTCACCTCAACCTTTCTAATGCCGGAATCATAGGGACCCTTCCTTCTCAGATCGGAAATCTTTCCGATTCACTCTATCTTGACCTTCAAAGTGATGAAACTTGGTTTACTGACAATATTGATTGGGTGTCAAGTCTTTCAAAGCTTCGCTATCTTGCCCTGAGCAACATTTGGCCAGTTGGAGGAGGTATGCCAATTCCTTCTTTTGTTGGGACAATGACCACATTAATTCATTTGGCCAGAAAAAGGAGGTATGCCAATTCCCTCTCGATTGGAAAATCTCTTCAACTCCATATACCTTGA


Promoter Sequence:
>Vu_16486::LG4:24789961-24791961(-)
CTCTGCTTCGCATTCTACATTCTCTCAAAACCTTAACTTTTTCTCTCTCCCGCTGTCATGTTCTCTCAAATCTTTGATTTAAAAAACTCTCAACATTCCAAACCAATGAAGAATTCTTCCAAACCTTTGGACCATCATCATCATCATCTCATCTGATCACCAGATCAAGATGAATATGATAATTCAACATCTTTTCCTACTCTTGTAATCAGAATTTACTTGCCTTACGCACGTACTTTCCTACCCAAGCTTCCAATTGTCTCCTTCATTTCCTTCTTCACCCCTTTCATCCTCTCTCTTTACTCTTAACCCTACTCTTGAACATTTAAACCCTCTGCCCTACCCCTTTTTGCTCTCCCTTCATAAACCCTTTCAGCTCCCTCTTCCTCCTTCACTCTTATCATCACACACTCTTTGCGTCGAGCTATGATGTCCTTTCTATCCTTTCCTTTTGATATTTATCAAATAAGGGGGAGAAAGACTTTAGACACGTCAACATCTGGGAGCATGTACTTAGGGGAATACACCAGAAGATAGAATATAATAGGATAGCTCAGAATCAGGGGGAATCACTATAATTTATGTGTAAGTGTTGTTTATGGAATGACTGATAGATTTATAGATAAATATGCATGCAAATAATAGTGTATGAAATAATGGTAATGGTGTAGTGATTTTTGAGGAGAAAATCTTATCTTGTGTGTAAATCTTTAGTGTGTGTGCATTGAGATAAGGATTGTTCCATCATGTGAAGTTATGCTAAACTTTACTATCCCTTCATGCTCATGTAGAGGAGAATAATTAGTTGGTGAGAGTGGCAATAGGTTGTTATCATAAGGATGAACCAAGGATTCTTATGACCATGACAGGAACTAACCTTGTGAGTGGTAGTTGGGTAGAGCTGCTCAGTAAAGTATGTTACCATCACAAATGCATGACTTCACGAGTCTGACTCAAGTCCATGGATCAGAATAAATTGAGTCTAGAAAGGTCTAATTTCATGTATGAATGTGTGAAAATTGTGTGATGAACTTTGACATGTTATTAGATATGTTTTGGTACTATTTATATTTTCAGCTAGCTTACCTTGTGTATATCTAGATGATTTAATTATTTATGAAAATTCTTTTGCACAATAGTTTACCCTATTGTTTCTTTTGGTGTTTTTTATGTGTTTGTTTATTTCTTTTATAAATCACCTTATTCGTATAAGCAGACGAGGTGTAGGTATTGAAACATCTCTAGTGAAGAACATCGATGATATAGAGTATTCTTCCTTGTTGTCAGTAGTTTTTCTTAATTGCTTTAAATATATTTCTTTATTGCGGTTATTGTTTTTATAGATAATTGTATTAATACCATGTATTTATATGTTTAGACAATTTATTCTGTTTATCAATTTTATAATGTTTTATTTTATTAGTTGTAAGACACTAAAATTGAAATATTAGAAAAGGAAAATTTAAAATTTACATATTCATTTTACACAAATAAAATTTTAAAACAATTGATAATGAAAATAAAATTTGCATAAAAGAATAAAAAAAAATCTGTATAAGTTAGGTATTTGTATTAGTTGTATATTTATTATTCTTTCCTGCATCTTAGCTATAAGAATGATATTATTAGAGTGAGTGACTATTAAGTGAATGAGTAAGACTGTGTCAAACAATGAGTTGGGTTTTTAAAGTCAAGGCAGAAATAATACATTTAGTGTGAACTTTACTATTTATAAAGAGTCTTTAAAATAGATTATAATATTAATTTTAAAAAGTAATTCTTGGTTGTCAATTTGAAAAAAAGGAAGTTAAATAAAATAATTAAAAGTGATTTGAGGAGTCAGTAAATTCTAAAAATTATTTTGATAAATAAAGTTTACAATTTGTTTAAATAGATTATATATATTGTCGTTTATTTCTTTCATACATTCTCGTATAATAGGTTATTACATGAGGAAAATCAATAATTCGATGTCTTTAATAGTTTTGTTTTTATGATTT


Gene Sequence:
>Vu_16486(-)
ATGTGTGGTGTTCTAATTTTGTAAGCCATACCGTGGATAGGACTTTAAAAGTCTTTTTTATTTCATTTTGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGCCGTTTCTGGTTTTCGTCCCTCTTCCAAAGTAAGGTACAATTTGGTCCTCATTCTTTAGAAAAACGTTCATTTTAGTCCTCAAAATTTTGTTTTTAGTCCTCGTTTTAGTCCTCAAAACGTTCGTTTTTTCGACTAAAACGACGTTTTTTAAAGATTGAGGACTAAATTGTACCTTACTTTGGAAGAGGGACGAAAACCAGAAACTGTCAATAGTTTAGGGACTAAAAACATATTTAACCCTTTCATTTTCTGCATTTATTTGTCACGATGTCATAATTTAATAACCCACAAAGTGGGTTGGACTAGTTCTATTTTTTCTTTTTATGTTATTAGTCTCCTTAATTTTTTAACTTATAAAATGGACGAGGAATAAGAAATCCATGTATTTAAACAAGCCTTTCATACATTTTTTGATCGTCTCTCATTTAATTACGTTCTTCTTGTCTATTAAATTGATAGATTTAAAATAAAATACAAAATATTTTACGGACTTTGACAACTCAAACTGATTTTATACTATAGAAAATTTAAATTGTTTACAAATTAATGACTTTGTGTTTTCAGATAGTTTTTTTAATGGCTTCAGGCTTCATAAATCCATATAATTGATTTTAATTTTTCTAAAACAATTTAAGTTTTGTAATGACATCTTAGCTTTCAATTTTTCTAAAACATTTTTTTCTAACTTACTATTCATCCGTCTCATTTTTTTCTACCTTGCAAAGTAAGTTAGAAAGATGTGAGAAGAAAACAAGCATCTTCGTCAACATCAATTAGTCCTACTATACAATTGTTCAATTCAATACGGTAAGTGTCAATTGATCATTAAAGGAGCACAATAATATTGTTTAATTAAGGAAGGTTTAATTATTTATTTTGTTCTTAGTTTCACTACAAGAATGGTTGAAATTACCGACGGTCATAATTCGTCGGTAATGTATAAAATCCGTCAGTAATTAGCATTTACCGACGGCTTACCGACGGCAAAAATACCGTCGGTAAAAACGTTGTCGGTAATTACCGAAGGCTTTTGACCGTCGGTAATTACCGAAGGCTTTTGGCCGTCGGTAAATCCTTCGATAATTACCGAAGGCTTTTGGCCGTCGGTAAATCCGTCGGTAAATGTCGCGACCTGGTTCATCTTCTTCCTCTTCCTTTGTCGCTGTGTAAATTTTTTTTTCCATTTCCACGAACCACCACCAAAACGGCATCACGCGAGTAACAAACTAGTTTCCAAAGTATCAACCAACCAATTTATTTTTAATAGTTAAAATTATAGTGAATGATGGAGAGTTTTTCTGCAATTCTCATATTTGTAAGATAAATGTTTCTAATCGTTTCAATGTGGTGGAAAGAACGGTGGTAGAGGGCAGCGGTGGTGGAGAGAACGGTGGTAGAGGACAGCGGTGGTGGAGGGAAGCGGTGGTGGAGGGCATCGGCGGGAGGGCAGTGACAGTGGAGAGCAACGATGATGGAGAGCAGCGGTGGAAAGCAGCGGTGGTGGTGAGCAGCGGTGGTGGAGAGCAGCGGTGGTGGAGGGCAACGGTGGTGGAGGGCAGCGGCAGTGGAGGGCAGTGACAATGGAGAGCAGTGACGGTCGAGATTTCTTTACTGATTGAAATGAGAGGAGAAATACTTCTTTTACCCACATATATTGGCAGTGGATGCGAAGCTGGTTTCGAAAAATTCTGATTTTTTACCGACGGCCAAAAGCCTTCGGTAAATCCGTCGGTAATGTCATCCACGAAATAATGGGCGGGAAAAATCCCGCTCTTTTTACCGATTGCCAAAAGCCTTCGGTAAATCCGTCGGTAAATGCTAATATGAAAAAAAAATTTTGCATAGAAAATTAAAATGGAAATATGAAAAGGCGTGCCAATTTAGTATGCACAACCCAGTCACTTATTTCTAATATAAAAATAGATACTTGCTTTGCTTCTATCTACACATGAAAATGAATCTCTCCAGTATTTTTATTTGTATTATCGTAGTTGTTCATTTTTGTCCGTTTTCCCGTATTGAAATTGAGTGCATACGATGCCCAGAGTTAGTAGTGTACATCCCAGAAGAGAGAGAGTCATTTTTGAAGTTAAAGTATCATCTCAAACATTCTTCAAATCGACTTTCTTCTCGGAATTCCAATCGCTGTCAATGGAACAACATTACATCCGGTGAGGCCCAGCTTCACTTTAGCATTCAATTTCCTTCTTCCGATGAGAGTGTAGGTTATCCATTCAACGAAGAAGTTTTCGAAGAAGCATTGGAAGAAGGGTATGGTGGAGAGATAAACCCTTGTTTGGTTTATTATTTTAAGCATTTCAATTACTTAGATTTCAGAGACAATCTTTTTCAAACTATTCTGATCCCTTCTTTCATTGCAACAATCACTTCCTTAACTCACCTCAACCTTTCTAATGCCGGAATCATAGGGACCCTTCCTTCTCAGATCGGAAATCTTTCCGATTCACTCTATCTTGACCTTCAAAGTGATGAAACTTGGTTTACTGACAATATTGATTGGGTGTCAAGTCTTTCAAAGCTTCGCTATCTTGCCCTGAGCAACATTTGGCCAGTTGGAGGAGGTATGCCAATTCCTTCTTTTGTTGGGACAATGACCACATTAATTCATTTGGCCAGAAAAAGGAGGTATGCCAATTCCCTCTCGATTGGAAAATCTCTTCAACTCCATATACCTTGA