Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16443 LG4 23961087 23963506 PREDICTED: scarecrow-like protein 8
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   cytoplasm, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/C 23961339 3_prime_UTR_variant
A/T 23961347 3_prime_UTR_variant
A/G 23961368 3_prime_UTR_variant
A/G 23961478 synonymous_variant p.Asn616Asn
G/C 23961494 missense_variant p.Thr611Ser
G/A 23961501 stop_gained p.Arg609*
T/C 23961502 synonymous_variant p.Ser608Ser
C/T 23961610 synonymous_variant p.Arg572Arg
T/G 23961652 synonymous_variant p.Gly558Gly
C/G 23961653 missense_variant p.Gly558Ala
T/C 23961664 synonymous_variant p.Arg554Arg
C/A 23961739 synonymous_variant p.Ser529Ser
G/T 23961865 synonymous_variant p.Thr487Thr
T/C 23961946 synonymous_variant p.Ser460Ser
G/C 23962048 missense_variant p.His426Gln
T/C 23962109 missense_variant p.Glu406Gly
G/A 23962126 synonymous_variant p.Asn400Asn
C/T 23962138 synonymous_variant p.Pro396Pro
A/G 23962141 synonymous_variant p.Tyr395Tyr
C/A 23962233 missense_variant p.Ala365Ser
A/T 23962242 missense_variant p.Leu362Ile
G/A 23962340 missense_variant p.Pro329Leu
G/A 23962495 synonymous_variant p.Ser277Ser
A/G 23962642 synonymous_variant p.Ala228Ala
A/G 23962660 synonymous_variant p.Asp222Asp
G/A 23962666 synonymous_variant p.Asp220Asp
C/T 23962672 synonymous_variant p.Leu218Leu
C/T 23962699 synonymous_variant p.Arg209Arg
C/T 23962700 missense_variant p.Arg209Gln
C/T 23962723 synonymous_variant p.Pro201Pro
G/A 23962724 missense_variant p.Pro201Leu
G/A 23962725 missense_variant p.Pro201Ser
C/T 23962726 synonymous_variant p.Glu200Glu
C/T 23962732 synonymous_variant p.Val198Val
G/A 23962742 missense_variant p.Pro195Leu
C/T 23962747 synonymous_variant p.Pro193Pro
G/C 23962773 missense_variant p.Arg185Gly
G/A 23962774 synonymous_variant p.Asn184Asn
C/T 23962777 synonymous_variant p.Gln183Gln
T/C 23963047 synonymous_variant p.Gln93Gln
G/A 23963132 missense_variant p.Ser65Leu
A/C 23963211 missense_variant p.Ser39Ala
C/T 23963216 missense_variant p.Gly37Asp
C/T 23963217 missense_variant p.Gly37Ser
C/T 23963238 missense_variant p.Ala30Thr
T/C 23963239 synonymous_variant p.Ala29Ala
C/T 23963252 missense_variant p.Arg25Lys
C/T 23963268 missense_variant p.Gly20Ser
G/A 23963276 missense_variant p.Ala17Val
G/A 23963288 missense_variant p.Ser13Leu
G/T 23963291 missense_variant p.Ala12Glu
C/T 23963314 synonymous_variant p.Pro4Pro
C/T 23963336 5_prime_UTR_variant
A/T 23963359 5_prime_UTR_variant
A/T 23963360 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16443.1
MSSPGFTGGGGASEYFAGAGGFTGRSIPAATMNNPNGVSTATANLHPLYRTQQQNLPAMFLDPASQIAQRQTPTLMGKRTLTEFQTYNQTYNQAYNQPNNNPNHVLSNLLLRSVKPRTSFSQVSMDNFPELHNQNPSLYQQQRFGVPLLHQLRPQPINLPSNGSGPMPSPNFGYRNSDLGMPQNRVRLSGPLPVPVQVAEPEKKIMDHRLLELEKQLLEDNDEGEADAASVITSSEWSETYQNLISPGPVQKLASTSPTSSTTSSTSSSSSIASPASGCSKQTLMEAASAIVEGKYDMVTEILNRLNGPNRTDKLTDCMVLALKSRMNPVEYPPPVKELFGYEHAESTQLILENSMCFKVGLMAANLAILEAAFEEKTVNKFCVMDFEIGQGKQYPHLINALSAREQNVTLKIVAVAESGSEDRVHVVGDMLSRLAERKRIGFEFRLVSTQKLTELTRESLGCNEDEVLMVNFAFKLNKIPDESVSTENPRDELLRRVKGLAPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMTSRDNNNTINSSDRVRLEEGLTRKLHNSVACEGRDRIERCEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTATNNNNRVNSGLTVKEENGGIFSGWMGRTLTVASAWR*


CDS Sequence:
>Vu_16443.1
ATGTCATCGCCGGGGTTCACTGGAGGAGGTGGGGCGTCGGAGTATTTCGCCGGAGCGGGTGGATTCACCGGCAGATCCATTCCGGCAGCCACCATGAACAACCCGAACGGCGTCTCGACTGCCACCGCAAACCTCCACCCTCTCTACCGAACCCAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTGCCTCGCAGATCGCTCAACGCCAAACACCAACCCTTATGGGTAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTATAACCAAGCCTATAACCAACCCAACAACAACCCCAACCACGTCCTCTCCAACCTCTTGCTTCGTTCCGTTAAGCCTCGAACCAGTTTCTCTCAGGTTTCCATGGATAACTTTCCCGAATTGCATAACCAAAACCCTTCTCTTTACCAACAGCAGCGTTTTGGTGTTCCTTTACTCCATCAGCTCCGTCCCCAGCCCATTAACCTTCCCAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTATCGGAACTCTGATTTGGGCATGCCACAGAACCGGGTTCGACTTTCTGGTCCTCTTCCGGTTCCCGTTCAGGTGGCTGAGCCGGAGAAGAAGATCATGGATCACCGGCTTCTGGAATTGGAGAAACAACTTCTGGAAGACAACGATGAAGGAGAAGCCGATGCTGCGTCCGTGATAACCTCCAGCGAGTGGTCTGAAACGTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACTGGCTTCCACATCACCGACTTCATCAACCACGTCGTCTACTTCATCATCTTCCTCCATCGCTTCACCTGCTTCCGGATGCTCAAAGCAGACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAATATGACATGGTTACTGAGATCCTGAACCGGTTGAACGGTCCGAACCGGACTGACAAATTAACCGATTGCATGGTGTTGGCGTTGAAGTCCAGGATGAATCCGGTGGAATATCCGCCTCCAGTGAAGGAGCTTTTCGGCTATGAACACGCTGAGTCCACTCAGTTGATTTTGGAAAACTCCATGTGCTTTAAGGTAGGGTTAATGGCTGCGAATCTGGCGATTTTGGAAGCTGCATTTGAGGAGAAAACCGTAAACAAGTTCTGCGTGATGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTCATCAACGCGCTCTCAGCACGTGAACAAAACGTCACGCTCAAAATAGTGGCTGTGGCCGAGAGCGGCAGCGAAGACAGAGTACACGTCGTCGGAGACATGCTGAGTCGTCTAGCAGAAAGGAAGAGGATCGGGTTCGAGTTCAGACTTGTATCAACTCAGAAACTCACCGAGTTGACTCGTGAGTCACTGGGATGCAATGAGGACGAAGTTCTCATGGTGAACTTTGCTTTCAAGCTTAACAAAATCCCTGATGAGAGCGTCTCTACCGAAAATCCTCGTGACGAACTTCTCCGGCGCGTGAAGGGACTCGCACCGCGCGTGGTGACAATAGTGGAGCAGGAGATGAACGCAAACACAGCACCTTTTTTGGCTCGCGTGGCAGAAACGCTGTCGTTTTATGGTGCCTTATTGGAGTCCATGACATCTAGGGATAACAATAACACCATCAACAGCTCTGACCGAGTCAGACTCGAAGAAGGACTGACCCGCAAGCTACACAACTCAGTAGCATGCGAAGGCAGGGATCGCATAGAGCGTTGTGAAGTGTTTGGAAAATGGCGAGCGCGCATGAGCATGGCAGGGTTCGAGTTAAAGCCACTGAGTCAAAACATGGCCGAGTCAATAAAATCACGACTCACTGCCACCAACAACAATAACCGAGTCAACTCGGGACTGACAGTGAAGGAAGAGAACGGTGGTATTTTCTCAGGCTGGATGGGAAGAACACTGACGGTAGCATCTGCTTGGCGTTAA


Promoter Sequence:
>Vu_16443::LG4:23963506-23965506(-)
TACATTAAAAATAAAAAATTTGCCAAGTAATATCTTTTATATTTCTATGAAATTTATCAATTTACTTTTATCACTTTACCTATACACAAATAATACAACATTATTTTGTATATCTATTTTTCTACATTGTGGTATATTAGTGTACTTTTCCATCTAAAAAAACTTATTTAATATTTTATCTCTGAACTTTAAAGAGTTTATATAAATATGATATATTAAAAAATGAAATTCTCTTTCCTGCATTCAGCTAAAACGCTTTAATATATAAAAAAAAAACATTTATCAATAGAGACTAGTTTCTTAGATTGACGATAATATCACTAATATTTTTTAACTAATAAATTATCTAAATTTCCTTGAGAAATTTGTTTAAACTACGAAAATAATTTGTAACCGCTGTACATAATTCTTAACTTATTTTTGTATAATTTAACAAAATAAACTTTATACCAAAATTTATAATATAAATTCACATATGATAATTTTATTAAAAAATATTCAAGTAATCTATTTACTAAATACATAATCATGAACAGTTATTTAGTTAAAAATGCAAATGATGTACTGTGAAAGGTATGGAAGTTTTCTTTAAATAAATTTGCATTGGAAAGGTAATTTAGATGAGTTTGCCATGAGAAAATGACAAAACATATTAAAAGTAAATAGGATCCACACAGTGTTAACTTTAGTGCATATTTCGAATTAGGTGGAGTTTGAAAAGTTGATTTAACATACATAAACTTATTTTTATAGAATTGATTTCTGTAAAAGTCATAACACATAAAATATGACAGTATTGATAAAAACATTATTGTTAAATGTATTATTAAAAATATTATATATGTATATGTAAATGTTTTAATGTAATAATAAATGAGATTATTTGTTTGATTACTCAGCGTGACTGTATTATTGTTTAGGATAAACGAATAATTATTTAAAAATAACTATATGTTTATTACAACTTATTTTTCACAAACATATATGTTATTTATAGGTGCACATATTATATTTTTTTTATTTTCATTAAGGAAAAGTACATTCCACTTAAACATATCAAATGTTAAGGTACTTTTTTATCAGCCAAAAAGCTACACATTAAAAGCGAAAATATTTTTATATTCTGTATGATATAAGATACGTATTCATGTTAAATTTGTATATTCATTCTATCACCTATTTCTTGGAAACAAGTACATAAAAGAGAACTTGAAAAGTAATTTTCTTTTTATTTGGTTTTAAGGAAATAAAAGAAGAAAGAAATTAAAAATAATGGAAGAAACATATTAATTCCACCGTATTTTTATTGATTTTCCAATTTAAAGAAAAGAAACACTTTTATGTTCATTATTTCTTGGAATAAGTTAGAAAAAACTTCCACACCCATAATCAAATTTAATTAGATATATTCCATATTTGCAATAGTAACAAATCATAAGTTATTGCATCATTAAAGCTATTAACTTTTATAACATTAGAAATTTTGAAATCAACATCCAAAGCATTATGAAATGTCCGTTTTAAAAAAACATATATAAATCTATCAGCACCAACCAACTATACTGAATATAAAATAAATAAATAAATAAATAAAAAACTGAGTGATTGATTAACGCAATCTCCTTCTTAACAACTAACACTTTATCAAATTCTCAATTTACATTGATTTTCAGAAGTTTCACAAAACATCGCAACCCTGCCAAATCCTCACTTTATTTATTTCTCTTTTTCCACGCGCCTCAGAGGTTGCGTGCCAATTCAAGTTCGTTATTAAATAACAACAACACAGGTGTGCGTTTCGGCTGGCAAAACACACACTCTAATCACCGTCCATTCCAGCTGAATCTTGGAATCTTAAAAGTATCAACGGTCAGATCTCGATGCGTACAAACTCTGATGCGAAACATTCCACACTTGTATTTTAAACCCCAAAAAACAGAATATTGTAATATTTTATATTATGTGATATATAATAAACAATTTTTTTTAAATAAAAGAAA


Gene Sequence:
>Vu_16443(-)
ACCCTTTGCCATTCCCGTTATATTCATGAGAATCATTTCAACCCCATAAGAAGCACCACACAACATAACTAAAACACACACTCTCTCTCTCTCTTTCTTTTTCTCTGATGCATTCCTTCAAAAACACAACCTTTTAACTGTTTTTTTTTCCTTTTCCTTATTTTCTTCGCGGAATCCTAGAATGTCATCGCCGGGGTTCACTGGAGGAGGTGGGGCGTCGGAGTATTTCGCCGGAGCGGGTGGATTCACCGGCAGATCCATTCCGGCAGCCACCATGAACAACCCGAACGGCGTCTCGACTGCCACCGCAAACCTCCACCCTCTCTACCGAACCCAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTGCCTCGCAGATCGCTCAACGCCAAACACCAACCCTTATGGGTAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTATAACCAAGCCTATAACCAACCCAACAACAACCCCAACCACGTCCTCTCCAACCTCTTGCTTCGTTCCGTTAAGCCTCGAACCAGTTTCTCTCAGGTTTCCATGGATAACTTTCCCGAATTGCATAACCAAAACCCTTCTCTTTACCAACAGCAGCGTTTTGGTGTTCCTTTACTCCATCAGCTCCGTCCCCAGCCCATTAACCTTCCCAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTATCGGAACTCTGATTTGGGCATGCCACAGAACCGGGTTCGACTTTCTGGTCCTCTTCCGGTTCCCGTTCAGGTGGCTGAGCCGGAGAAGAAGATCATGGATCACCGGCTTCTGGAATTGGAGAAACAACTTCTGGAAGACAACGATGAAGGAGAAGCCGATGCTGCGTCCGTGATAACCTCCAGCGAGTGGTCTGAAACGTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACTGGCTTCCACATCACCGACTTCATCAACCACGTCGTCTACTTCATCATCTTCCTCCATCGCTTCACCTGCTTCCGGATGCTCAAAGCAGACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAATATGACATGGTTACTGAGATCCTGAACCGGTTGAACGGTCCGAACCGGACTGACAAATTAACCGATTGCATGGTGTTGGCGTTGAAGTCCAGGATGAATCCGGTGGAATATCCGCCTCCAGTGAAGGAGCTTTTCGGCTATGAACACGCTGAGTCCACTCAGTTGATTTTGGAAAACTCCATGTGCTTTAAGGTAGGGTTAATGGCTGCGAATCTGGCGATTTTGGAAGCTGCATTTGAGGAGAAAACCGTAAACAAGTTCTGCGTGATGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTCATCAACGCGCTCTCAGCACGTGAACAAAACGTCACGCTCAAAATAGTGGCTGTGGCCGAGAGCGGCAGCGAAGACAGAGTACACGTCGTCGGAGACATGCTGAGTCGTCTAGCAGAAAGGAAGAGGATCGGGTTCGAGTTCAGACTTGTATCAACTCAGAAACTCACCGAGTTGACTCGTGAGTCACTGGGATGCAATGAGGACGAAGTTCTCATGGTGAACTTTGCTTTCAAGCTTAACAAAATCCCTGATGAGAGCGTCTCTACCGAAAATCCTCGTGACGAACTTCTCCGGCGCGTGAAGGGACTCGCACCGCGCGTGGTGACAATAGTGGAGCAGGAGATGAACGCAAACACAGCACCTTTTTTGGCTCGCGTGGCAGAAACGCTGTCGTTTTATGGTGCCTTATTGGAGTCCATGACATCTAGGGATAACAATAACACCATCAACAGCTCTGACCGAGTCAGACTCGAAGAAGGACTGACCCGCAAGCTACACAACTCAGTAGCATGCGAAGGCAGGGATCGCATAGAGCGTTGTGAAGTGTTTGGAAAATGGCGAGCGCGCATGAGCATGGCAGGGTTCGAGTTAAAGCCACTGAGTCAAAACATGGCCGAGTCAATAAAATCACGACTCACTGCCACCAACAACAATAACCGAGTCAACTCGGGACTGACAGTGAAGGAAGAGAACGGTGGTATTTTCTCAGGCTGGATGGGAAGAACACTGACGGTAGCATCTGCTTGGCGTTAACATGGCTCACTTTTTTTCCTTTTTTTTTCTTTAATATTTAGTTTGGAATATTATCATGATTATATCACATATGATATATAAATATATAAATATCACATTGTTACTATATTTTTAAGTATGTTTAGAGATAATGGAAAGGCAAAGAGTATAGAATTGGAAAATTATATGATAATAGGGTGAAAAGAAAATCTGAAAGGAAAGTCCCTAACCTATTACCCTTTACCCTTCTTCTCTTGGTTTTACCAAAACTACTAATAAAGAAGTGTTTGGATTCCGAGAAGACTTGTGTTAC