Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16381 LG4 23187844 23189318 PREDICTED: probable WRKY transcription factor 27
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to gibberellin, negative regulation of transcription, DNA-templated, defense response to bacterium, defense response to bacterium, negative regulation of transcription, DNA-templated, response to gibberellin, response to gibberellin, negative regulation of transcription, DNA-templated, response to gibberellin, nitric oxide mediated signal transduction, negative regulation of transcription, DNA-templated, defense response to bacterium
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
A/T 23188144 missense_variant p.Leu298Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16381.1
MAHEDWDLFAIVRSCKAATFTATTTTPNPPTVTSTTTPRSPNTTSCFDSSHENASFSFPNLLQPPTNESQELHQLLINFNPTTTTTISSTITSAIGINPNSTFSDVAGFIGQQHIQQGHHHHLVPAPTNHTSIGAPSTTGFDRFQEQHHQQQHQSQTPEQQQRKQNLPQLQATQTSPILSPTTQPQTPRSRKRKNHQKKIVRHVTADNLSADSWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSNTEPNMFIVTYTGEHKHAKPVHRNSLAGSTRTKPSPTGLPEANEAVSGIKIENACSSTSELSTTSLKSGTPENEETVADGEPDFPEMEVDPDALSDNDYDLLIPNTGAMSDAVLLGLTNGAQTKGSDRNSESGLTQSKSDPFSNTV*


CDS Sequence:
>Vu_16381.1
ATGGCTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAACCACACCAAACCCACCCACCGTGACTTCCACCACCACTCCCAGATCTCCAAACACCACCTCTTGCTTCGATTCCAGCCACGAGAATGCATCATTCTCTTTTCCCAATCTTCTGCAACCACCAACCAATGAGTCTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCACCACCACCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTTGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGGTTTTGACAGATTCCAAGAACAGCACCACCAACAGCAACATCAATCCCAAACTCCAGAACAACAGCAACGAAAGCAAAACCTGCCTCAACTTCAAGCAACCCAAACAAGTCCTATCCTTTCACCAACTACACAACCACAGACACCCAGATCAAGAAAGAGAAAAAACCACCAGAAGAAAATTGTGCGTCATGTAACCGCAGACAACCTCTCGGCAGACTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCGTATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCAACACCGAACCCAACATGTTCATCGTCACCTACACCGGCGAACACAAACACGCTAAACCCGTTCACCGTAACTCCCTCGCCGGCAGCACCCGAACCAAGCCGTCTCCAACCGGTTTACCCGAAGCCAACGAAGCTGTTTCTGGTATCAAAATAGAGAACGCGTGTTCATCGACTTCTGAGCTTTCTACGACGTCGTTGAAGTCTGGCACGCCGGAAAATGAGGAAACAGTCGCCGACGGCGAACCCGATTTCCCTGAGATGGAAGTTGATCCTGACGCGTTGTCTGACAACGACTACGACCTTTTGATACCCAATACTGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTCAAACAAAGGGATCGGATCGGAATAGCGAATCCGGGTTGACCCAGTCCAAATCAGACCCATTTTCCAACACGGTGTAG


Promoter Sequence:
>Vu_16381::LG4:23189318-23191318(-)
TTTGATTTCTGAGGAAGAAGAAGGTGTACGCAGAGAATGGGAAGGAGTGTTTCAGAAAAATCAATTCCCTTCCCAAAGTCAAACGGACGTTCTCTCATACGCTGACACCTGGCTTCCACTATTGATTTCAGAACATTCCAATTTGACACATGGCAGACGTGAGTCAGAGAATGTGAGTGCATTTTAATTGCACTGAACGTGTGGCGTGGGTGCATTTATGGAAGCTGACAGGTGACTCAGCAGTGCTTTTATGGTGACGTGACATAAAACAAATAGTATTGAAAAAATTATTATTTTTCAATAATTTTTAAATAATTTTTTTAATTTAAATCACTTATAACTTAAACACAATAAATAGTATTTAATATATTATTATTATTATTGTTGGGTGCCAACTTATACATTAAAAGAAAACCAAAAGAAATAGAAAGTATATGAATTCAAACAAGTTCCCCCTCCTCACAAGTCATTGAACTCGTATACATTACTGCTATTGGCTGACAATAATTCAAAATCATTTTTTCTACGGTAACACAAGTTTTACTGAAAATACATAATTTAAGTATACATTTTTTTATACACTCAATTCAAAATTAATTTAACTCAACTTTCTACCTTAACAAATGTTTTACTGTAGAATATGAAACCAAGATAATTGAAAATTTTTTATTACGGTAAATTCAAAATTAATTTAACTCAACTTTAAAGCAAAGAATCCTTCCAAAAAAATTATATTCTCTGCAAAACTAATACGATAAAATTTATGTTTATATTAAATATGTCTAAATTTTTCTTTTGATTTCTAATAAAAAAAATGTATTCTTGTACATCTAAAAAAAAAAATTAATTTATGTTTTCTCTTGAATTTTTTGACTCTGTTAAATGGACCTTTTGAAATACTTCTGATTTATTTTTTCAAAATATTTTCATTTTTTGCTGTCTTTGAAAATATCTTATGCTATGTTTTCCATAAAACAATGACATGTCAAGTCAACACAATCAATTGAATTGCAATAAATGGAACACAAAAGAAATCAGAAATCAAAAGACAACTTGTTTTTATTAAAACCAAAAGAAAAATATAAACATATTTAAAGAAAAAAACTGAATTCCTTTTAATCAGAAGAAGAAACTTAAAAAGCTTATTAAAGACACAGCATAGAGGGTACAAGGTAGAGAGTAGTGTGTGACCCAGTTTTGAGGGCAACCATGCAGAAAATTTTGAAACCGTGGCAGCCAGGGCTACGTTGCCTCCATTACTTGCACTCACCATTCAGAGTTCGAGTAAGGTAAAGACAACTGTGACATATTTTTACATTTATTTTTAACATATAATATAAGAATAAAATGGTTATAAAAATATAAATTTTTGTAATTTAAAAAAAAGTAAAAATCAAGTAAAAATAATTTTAAATGAATAAAAAATTTAAGTGTGTAAAAAGATTAATTTTCTTTTTCTTAAATATACAAAAACTTAAAATCTTAAGTATATAAATATGACAATAATTTAAATGGACCATTTGGTAGGGCTAAGATAGAAATAAACATAGGCATCTTCCTTAGGTTGCCCCCACCTTTCGTTGGGTCCCCTTTGACATTATACCAAAGTCAATGCGAAAACCTTGAGAAACCAAAAAACAGAACACTAAATCCATGAGGGAATTAAAAAATCAATAAGAAAACAGTCTCACTTTCATATCTACTTTTCATCTCTATCCTTTTCTTTTTCCTTTCCTTATAGAATCCATTTTCTTTCTCAGTATAAATAATTAACAATTACTCAACTGGGTCAGTGCTCCACCAGAGCATTCTCTCTCTCTCTCTCTTCTCTTTTGGTTCATACAAAAAGTCAGCGCCATTCTTTCTGCAATTTCACCTTTTCCTTCTAGCAGTTGTTGTCTCCATTGGGTAGAACAGAAATAGAAGAACCAAACAAACACAACTGAGATTTGTTTTGTGAGGATTTCTAGGCATACCCACCACCAACCTGTTCCTCAAAA


Gene Sequence:
>Vu_16381(-)
ATGGCTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAACCACACCAAACCCACCCACCGTGACTTCCACCACCACTCCCAGATCTCCAAACACCACCTCTTGCTTCGATTCCAGCCACGAGAATGCATCATTCTCTTTTCCCAATCTTCTGCAACCACCAACCAATGAGTCTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCACCACCACCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTTGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGGTTTTGACAGATTCCAAGAACAGCACCACCAACAGCAACATCAATCCCAAACTCCAGAACAACAGCAACGAAAGCAAAACCTGCCTCAACTTCAAGCAACCCAAACAAGTCCTATCCTTTCACCAACTACACAACCACAGACACCCAGATCAAGAAAGAGGTAAATCATTTCAATTCCCGACAATAAACGAACTTTACTCAATCTCGTTACATTAAAAGAAAAACTCAAACTTTTTTACCATACACAATACCCCATAAGATAACCTACCACATCTTACATCAATTTCCATTTTTCTCCACAGAAAAAACCACCAGAAGAAAATTGTGCGTCATGTAACCGCAGACAACCTCTCGGCAGACTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCGTATCCAAGGTAAGGAAATAATCGAACACATCATATACGTATATGAAACATTCTCTCATCTGCTCACAGTAATATATTCACAACATTACGCTTCGAATCTCATTCTCGATCACAAGAAAAACTCATTCAAAGAGTTTTTATTTCACAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCAACACCGAACCCAACATGTTCATCGTCACCTACACCGGCGAACACAAACACGCTAAACCCGTTCACCGTAACTCCCTCGCCGGCAGCACCCGAACCAAGCCGTCTCCAACCGGTTTACCCGAAGCCAACGAAGCTGTTTCTGGTATCAAAATAGAGAACGCGTGTTCATCGACTTCTGAGCTTTCTACGACGTCGTTGAAGTCTGGCACGCCGGAAAATGAGGAAACAGTCGCCGACGGCGAACCCGATTTCCCTGAGATGGAAGTTGATCCTGACGCGTTGTCTGACAACGACTACGACCTTTTGATACCCAATACTGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTCAAACAAAGGGATCGGATCGGAATAGCGAATCCGGGTTGACCCAGTCCAAATCAGACCCATTTTCCAACACGGTGTAG