Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16221 LG4 19089710 19093514 PREDICTED: transcription factor VIP1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to sulfate starvation, cellular response to sulfate starvation, import into nucleus, cellular response to sulfate starvation, DNA-mediated transformation, response to osmotic stress, osmosensory signaling pathway, thigmotropism, osmosensory signaling pathway, osmosensory signaling pathway, negative regulation of cell differentiation, thigmotropism, negative regulation of cell differentiation, response to osmotic stress, sulfate transport, osmosensory signaling pathway, import into nucleus, thigmotropism, osmosensory signaling pathway, cellular response to sulfate starvation
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, cytosol, cytosol, nucleus, cytosol, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, mitogen-activated protein kinase binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, nucleic acid binding, protein binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein self-association, chromatin binding, sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
C/A 19089878 missense_variant p.Pro57Thr
C/T 19089952 synonymous_variant p.Gly81Gly
T/C 19090099 synonymous_variant p.His130His
C/T 19090117 synonymous_variant p.Ser136Ser
T/A 19090396 intron_variant
T/A 19090482 intron_variant
A/G 19090483 intron_variant
C/T 19090802 downstream_gene_variant
A/G 19090813 downstream_gene_variant
G/T 19090825 downstream_gene_variant
G/A 19090848 downstream_gene_variant
A/G 19090924 missense_variant p.Asp183Gly
C/T 19091060 downstream_gene_variant
A/T 19091247 downstream_gene_variant
A/C 19091305 downstream_gene_variant
A/T 19091430 downstream_gene_variant
A/T 19091502 downstream_gene_variant
C/T 19091566 downstream_gene_variant
A/G 19091582 downstream_gene_variant
C/T 19091617 downstream_gene_variant
A/G 19091629 downstream_gene_variant
A/T 19091677 downstream_gene_variant
A/G 19091722 downstream_gene_variant
T/C 19091724 downstream_gene_variant
C/T 19091752 downstream_gene_variant
T/C 19091777 downstream_gene_variant
T/A 19091982 downstream_gene_variant
G/T 19091984 downstream_gene_variant
C/A 19092070 downstream_gene_variant
C/T 19092092 downstream_gene_variant
G/A 19092160 downstream_gene_variant
A/G 19092164 downstream_gene_variant
G/A 19092227 downstream_gene_variant
G/T 19092563 downstream_gene_variant
G/T 19092593 downstream_gene_variant
A/G 19092609 downstream_gene_variant
T/G 19092643 downstream_gene_variant
T/A 19092682 downstream_gene_variant
G/C 19092749 downstream_gene_variant
T/A 19092750 downstream_gene_variant
T/A 19092816 downstream_gene_variant
G/T 19092844 downstream_gene_variant
T/A 19092865 downstream_gene_variant
A/T 19092887 downstream_gene_variant
C/T 19093054 downstream_gene_variant
T/A 19093072 downstream_gene_variant
G/A 19093100 downstream_gene_variant
A/G 19093125 downstream_gene_variant
G/A 19093173 downstream_gene_variant
T/A 19093337 missense_variant p.Tyr271Asn
T/A 19093340 missense_variant p.Cys272Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16221.1
MDPKFTGKPPLTVDLERMPERGSHHRRSHSDTSFRFAANFDDLLLFDASDLDISTLPSPLPLPSPGASGAVPIAVDSDESGGRPRPSGAPAGGHLRSLSVGSDFFDGIGFGGGEERGGGGRGGGERRVGHHRHSNSMDGSSTTSFEADSAMMIDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEALEQEAQLREDLNDALKEELQRLRAQSTRLGAIAGNPSFGGIFNQLASQLAMQQLSNSAPQQPQHQAQVGMPPPPSGQNHPNFMDFNQQK*


CDS Sequence:
>Vu_16221.1
ATGGACCCGAAGTTCACCGGAAAGCCGCCGCTGACGGTGGACCTTGAACGCATGCCGGAGCGTGGGTCCCACCACCGCCGCTCCCACTCCGACACGTCCTTCCGCTTCGCCGCGAACTTCGATGACCTGCTCCTCTTCGACGCCTCCGACCTCGACATCTCCACGCTCCCCTCGCCGCTCCCTCTGCCTTCGCCGGGGGCCTCCGGCGCGGTGCCGATAGCGGTAGATTCCGACGAGTCCGGCGGAAGGCCGAGGCCTTCAGGGGCACCCGCCGGCGGGCACCTGAGGAGTCTGTCGGTGGGCTCCGATTTCTTTGACGGGATCGGATTCGGCGGCGGCGAGGAGAGGGGCGGCGGAGGGAGGGGCGGCGGCGAGCGGAGGGTGGGGCATCACCGGCACAGCAACTCCATGGACGGGTCCTCGACGACGTCGTTTGAGGCGGACTCGGCGATGATGATAGATGGCGTGAAGAAAGCTATGGCTCCTGATAAACTAGCTGAACTCGCTCTTATTGATCCCAAAAGAGCTAAGAGGATTCTTGCTAACAGACAATCTGCTGCTAGATCAAAGGAGAGGAAGATTCGTTACACCAGTGAATTGGAGAGGAAGGTGCAGACACTTCAGACTGAAGCAACCAACCTATCTGCACAGCTTACCATGCTTCAGAGAGACACCACAGATTTAACTGCAGAGAATAAGGAACTCAAACTGCGTCTAGAGGCTTTAGAGCAAGAAGCACAGCTTAGAGAAGATCTGAATGACGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCGCAGAGTACTCGTCTGGGTGCTATTGCAGGTAACCCTTCTTTTGGTGGGATATTCAACCAGTTGGCTTCCCAGTTAGCGATGCAACAGTTGAGTAATTCTGCACCACAGCAACCACAACACCAGGCACAGGTTGGCATGCCTCCTCCTCCCTCTGGACAGAACCACCCTAACTTCATGGATTTCAATCAGCAGAAGTAG


Promoter Sequence:
>Vu_16221::LG4:19087710-19089710(+)
CTCCACCTTTTTGCTAGACCCGCCATCATTGAATTCATGAACTATGCATTTTTAACCTTCTTTTTCCCATGTTTTCTTTGTACATCTTCATATTTTCTACATGAGATTTGTCCCTTCAAACATTCATTTCAATCAACGTTCGATAGGAATAAGATTTCTTCTATCCCTTCGTTCAACACCAACGATCATAGATGAGAAAAAACAAAGAAAAATTTTCCGTTTTTAGTCACCAAAGTTCTTCAGACTTTTTCTTATCAGACTTGGTTCACTACCAGTGTTGATGGTAGATTTCCTCATCCACCATTGGCACCTTGAAGTTTGTTGATGAAGTTTAATGGACTTGTTTCACCAACAGTCCCCAAAATCATAAAAAATATTCTTTATAGTTGAAAATTATATTTTTTTTATATAGTTAAGGAAAATAAAATTGTTAAGTATATACCAACTTTCTGCTGCATATCTCTTAAAATATTTTTTTTTTCTTAAACAATATAAAAATATATATTTTTCTTAGTAATGTTGATATGTTTTAGTTGAATGATAAACCCGTGTGGTAGGAACACCAGTGATTTAGAGGTCCAACACTACATGAATTCAATCCGTTTAATCCAGAAAAACCAAATTTATATGGCTCAAAAAAATTGTTCCTATTAACTTTTGTATTACTTATTTTCTTTATCTTTCTACCTTTTTTACAATCGATCAATGGAATGTTATATTATTTCTCCCTGATTGTGAAGCCATGACAAGATGTTTAGACAACGAATAAAAAAAGTCAACAATTAAGGAATTTTTTTTTAAAAGAACAAAATTGTATACCATTAATAGGCTATTTCTATTCATTAAATAATCTATTCTTAATTTTTATTTATTTAATAAATATACCATGTGTTATTTAGAGGTGAAAATTTGGTTATGTACAACACCGATTTCAGAAGTGTATCAATTTGTTTAAAATTTTACTAGAATAAATTTGTTCATTAATTAACATTTTACTAATCTTTTCTCAGAATAATCTGGATTTCTGCGTATGAAATTTTCTTTTGTAATTTTCAGAGTATAACTATTTTGCATAATTTTTATATCGATAAATGTAATGATATAAATCTATGTGTGATTTTGAAATCATTTCAAGAAAAAAAAAATCAATTGAAGATTATATGTAATTTTGGAAAGTTTTGAAAATTTGATAAGGTAAAGATAAGAAATCATATTGTAAATAAATAATTTCTATCTTAAGTAAGTAAAAATAGAAGATATTACTTAAATAGCTAAAAAAAAGTATATTAAAAGGAAAAGTCTCTCTGTTAAGCTTGTTTACTTTAAAAAAATATGTTTTTATTTTTATTTCTAATTTTTACATTTAATATCAAAATTATATAAAGGGTCACTCTTGATTAGTTAGTTCAGAAAAGACAAGGAATTCTTCCACTTAACTCTTTTAGCAAGCTAATTTCCACAAATTCATTATAGTGTTTCTTAATTTTATTATCAAAACTTTGAATACCAAACACTAATATGATTGATTGAAAATAAAGCAGTAATAATTTTTTTATCATTAATTTAATAATAATTGATTGAACACTAAACACTAATAATTAATAATTAAATAATAATTAATAAGGCTATTTAATGAATATATTCCACTACTAAATTGTTGTTTCCATTAAACTCCAAATTGAAAATGGTGTCAACTCTAGTTACGCCACCAATGAACATTGCCGTCAGATATCTCTAATCCCAACACTAATGATGCTCTTTGAGACCACTGCCTTCACACAACTTCCTCAACTTTTGCTCACTAAAGTCAATTTCTTGTCTGCTTCCACTTGTTCTTCAGCAAACTCACACACAACCACAACCCAACAACCACCTGAACAACCCTCTTCTTCTTTCTCTCTCTTCACCATCACCAACACCAACAAGAACAAAAACAAATAACAATCCAAGAAAGAAAAGGAAGAAGAGAAAGAAAGATTGGATTTTTATTCTTACTTCGA


Gene Sequence:
>Vu_16221(+)
ATGGACCCGAAGTTCACCGGAAAGCCGCCGCTGACGGTGGACCTTGAACGCATGCCGGAGCGTGGGTCCCACCACCGCCGCTCCCACTCCGACACGTCCTTCCGCTTCGCCGCGAACTTCGATGACCTGCTCCTCTTCGACGCCTCCGACCTCGACATCTCCACGCTCCCCTCGCCGCTCCCTCTGCCTTCGCCGGGGGCCTCCGGCGCGGTGCCGATAGCGGTAGATTCCGACGAGTCCGGCGGAAGGCCGAGGCCTTCAGGGGCACCCGCCGGCGGGCACCTGAGGAGTCTGTCGGTGGGCTCCGATTTCTTTGACGGGATCGGATTCGGCGGCGGCGAGGAGAGGGGCGGCGGAGGGAGGGGCGGCGGCGAGCGGAGGGTGGGGCATCACCGGCACAGCAACTCCATGGACGGGTCCTCGACGACGTCGTTTGAGGCGGACTCGGCGATGATGATAGATGGCGTGAAGAAAGCTATGGCTCCTGATAAACTAGCTGAACTCGCTCTTATTGATCCCAAAAGAGCTAAGAGGTTCGTTTTCTTTTTCTTTTTTGTGTTCTTGGTGTTTTTATGGTAATAAATTTAAGCGCAATTTCATTTATATGTTATGTATTTCTTTTATTTGATAGTTTCACATAAGTTGTTTTTTGCTGAAAATAATATGGTTCCAAATTATGTGATGTTTTATTATATTTGGGGTGTTGCAAGAAGTGTCACCAATATCCTGCACTGATGATTCGTCTTATTTAAAGGATTGAAACTTGTGGACATATGAGGTCCTACTAAAGAGTCAGAGGCTTATGGTGGTTGTGAAAACCATGTTATTATTATCATAAAGGGGTGTTTTGGATTGTGAGGAAACTGATTAAGAAATCTTGGTTAGATGAACTGATTATGGTTTTGGGATGTTTTATGTGTTTGCAGAATTTTTATTAACACGCTATCTGATTGATGATGCACTGGTGTTGTCATATTTTTTATTAAGTTGTTATGCCTGCCTTTTATTTTGTAATGCACAATTTTCTGCTGGATAATTAGGTTGTTAGGAAATAGGAATTACAGCATTCTTTATCTTCTTTTTTTCTTACTACAGTAAGAAAAATTGTGTTAAGGGGTGTATGGATTGTGGAAAACTGGGAGAAAATGATTAGTTTGATGCACTGATGGTATGGATTTGGAATGTTGTTCTGTTTGCAGGATTCTTGCTAACAGACAATCTGCTGCTAGATCAAAGGAGAGGAAGATTCGTTACACCAGTGAATTGGAGAGGAAGGTGCAGACACTTCAGACTGAAGCAACCAACCTATCTGCACAGCTTACCATGCTTCAGGTATGTCCTTTCTTTTTTCGTGTTGATGAATAAGCATGAATTTGGTAACTTGTTCTTGTCAGTGTTTGATGGAGCCCCCCAACACACTAGCATCGATGTAGGTTTACTTTATGCTGATCTTGAGTTGTGTGGTCACAAACTCAACAGTTTATGGATCCCACACATAATCAAGGGCCCTTTTTTTAAATGCAAAGTTATTACTAAAATTTTGTTATATCTTCAAAGTTTTCCTTGGTTTGGATAAAATTACTATATATGTCATCACTTTCATGTTGTTCTTATTACAGAACATCCCTCATAGATTTTATAATTTACGTGTGACACAGTAAAATCCCTTTTGACAATTATACCATGCTCATCTAGATTTTATACTTTTTTTGTCATATGGAAAGAAATCAAAGACAATGCACGCTTCAATTTTCATTTACTTTCTACTTCAAGGGATGACTGTGGCAGTTTGAGGAAATTTACCGTTGCACTTTGCTCCTAATACATAAATATCTTAAATTAGAAGGACCAAATTACCAGAGAGCAGACCTCAGTGGATATATTGCTTGTTGGTCTTCAAATGTCTTCTGAAATCATTTACATTTTTATCTTATATTTCATCAAAAAATTAGTGTTTTATCAGAGGGACTAGTAAATCATTAAACTGTGGCTGCGGGTTATATGGCAACCAAAATATAGGCTTTATTTTGATTACAATAACACAAGCATGAAATGATTCTTGGTGCATACGTTCCAATCATATGGGAAGTCATAACTGATTATTCAATACTGGGGCTATACTTGTTTAAATTATTCCGTGATAAACAAAGTAAGTTGAAAGTAAAGAAGAATTTGGTAATGAAACATATGCATAGCTGTTAGAAAAAGAATAAAGAATTGTGATGAAAACTTTTGTATCTCATTTAGGTAAAGAATTTGGGTAAAAAATAAATTGAGAACTGCAAGGCTGATGATTATGATGTTCTGGTATTTTTTTGAAAGAGTTGTGGGAAATTTTTGTTGTAGAGTTATCCTCACAGCTACTGTGGAAATGCTATGCAACTTGCATGCACGCAACAATGTTTAAAATCTGATATATCTTGATGCATATATGTTATTCGCGAAGATGTGTCTATGGTAGAATGGATGCTCATAATATAATAGAATAACAGGGCATGCAGATCAATCAAGTGTTTTGAATCAAATAGAGAACATATCGAGCATCAAAATATTGAAGAATATATTTACTTAAAGTTGCTGTAGCTTTTTTAGGCTTATAGCAGATTATGATTGTAGAAGAGGGGACATTTTTTTTTCCAGTTAACAGCTGTGTAATAATCTGCTAGGGTGACCTTAAATTCATGAGCTCTGCCAATTGCAGTCTTCCTTCACCAAACATTAACCAGGATAAGCATAACCTAGTTAACATCCTTCTCTTTGGTTCAAGTTTTCTATTGTGCTAGGTTGTTATGAAAAATTGGTATTTGATACTGCCCCAAGGCATCAGTTGATCCATTTAGCCTACCTCAGGAGGCAGTTGGATAAGGCTTAATTGTTGTAGTTGTTGTTTGTTGGAATGATGGTTTAGATGTTTCCAAGCTACTTATTCTAGATTATAGATATGGTAAATATCTGACACCGCTAGGTTTCCCTGTTTTCTTTTGTCTCAAAACTTAAATTGGTGCCTTTGCATTTGACTTTTGGATGATGAATGGTCCCGTCCACTTGAACGAATCTGACACCCCCTTTGAAGCTTAGCAAAGTTTGTCTGAATTCAATCAAACTATTTTTTACTACATACCATTACTCTCTTAGTATTTCAGTTAAATTCTATTTCGTACACAAGGGAAAGTAGAAACAAGCAGAAAACTTATCAATTTCTCATATGATGCAGAGAGACACCACAGATTTAACTGCAGAGAATAAGGAACTCAAACTGCGTCTAGAGGCTTTAGAGCAAGAAGCACAGCTTAGAGAAGGTATGCATCACTTATGTTTATCATGCCGTCAAAAATGGACATGTGCTGTCCCTGTTCATCAGTTATTTCATACCAAATTGGATAAATATACGTGACTACATTGTTGTATTAACATTATCTCATGAATTTTTATGGGTTTATTTCACACCCTTTGTTCAAGTACAGGAACAAAATTCCTTGAAATATGTCAAGTTGTAGATTTTATATTTGTTTTTTTCAAATTTAAGAAATGAATACCAACATGGCTACACTGTGTAATTGCAGATCTGAATGACGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCGCAGAGTACTCGTCTGGGTGCTATTGCAGGTAACCCTTCTTTTGGTGGGATATTCAACCAGTTGGCTTCCCAGTTAGCGATGCAACAGTTGAGTAATTCTGCACCACAGCAACCACAACACCAGGCACAGGTTGGCATGCCTCCTCCTCCCTCTGGACAGAACCACCCTAACTTCATGGATTTCAATCAGCAGAAGTAG