Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16166 LG4 17767819 17770041 PREDICTED: uncharacterized protein LOC108343695
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
T/A 17767984 3_prime_UTR_variant
C/G 17767996 3_prime_UTR_variant
A/G 17768005 3_prime_UTR_variant
T/C 17768040 3_prime_UTR_variant
G/T 17768084 3_prime_UTR_variant
T/G 17768087 3_prime_UTR_variant
A/T 17768093 3_prime_UTR_variant
C/T 17768099 3_prime_UTR_variant
C/A 17768219 missense_variant p.Arg409Leu
C/T 17768432 missense_variant p.Ser338Asn
G/A 17768697 missense_variant p.His250Tyr
G/A 17768698 synonymous_variant p.Pro249Pro
C/T 17768749 synonymous_variant p.Leu232Leu
T/C 17768878 synonymous_variant p.Lys189Lys
A/G 17769307 synonymous_variant p.Cys46Cys
A/G 17769464 5_prime_UTR_variant
A/T 17769507 5_prime_UTR_premature_start_codon_gain_variant
T/C 17769539 5_prime_UTR_variant
C/A 17769694 5_prime_UTR_variant
C/G 17769705 5_prime_UTR_variant
A/T 17769775 5_prime_UTR_premature_start_codon_gain_variant
G/A 17769781 5_prime_UTR_variant
G/T 17770013 5_prime_UTR_variant
G/T 17770015 5_prime_UTR_variant
G/T 17770021 5_prime_UTR_variant
G/T 17770039 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16166.1
MEGNLSQGGMVQGGSSFGGFDLPGSMRVHRQGHHPHSMNQHQTHPCQGPSVHSSVHDGFPLTMGTLQNCDQTMAMTEFSQGDRNKNSPSDESFAEEGVDGHQEGGRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDAPSDCGGARRKITVLQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPSLLDVIDYLSEKEKDEVRKILSSKHLFYEEMCSYHNCNRLHLPHDLELQRSLQLAHRNRDDHDSDDVRRSQHDDHDEDDPEVETDDHDDFEENYATHADSRGVYGEAGRPMKRSKPGQGHEDAATFGSALNSQEYNKSSYPHMVQSDVNQAAPEKMSSPWLQKQWVDSRSLQLEEQKLQIQVEMLELEKQRFKWQKFSKKKDRELEKLKLENERMKLENERIALELKRKGVGADFN*


CDS Sequence:
>Vu_16166.1
ATGGAAGGGAATTTGTCTCAGGGAGGTATGGTTCAGGGTGGGAGTTCCTTTGGTGGTTTTGATCTGCCTGGATCAATGAGGGTTCATCGGCAAGGGCATCATCCTCATTCCATGAATCAACATCAAACTCATCCTTGTCAAGGGCCTTCAGTGCATTCCTCAGTTCATGATGGTTTTCCTCTCACAATGGGAACCTTGCAGAACTGCGATCAAACAATGGCAATGACTGAGTTTAGTCAGGGAGATAGAAACAAGAACTCTCCAAGTGATGAAAGCTTTGCTGAGGAAGGTGTTGATGGTCATCAAGAAGGAGGTAGAGGGAAAAAGGGGTCGCCTTGGCAGAGGGTGAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACGGCTGTTTCTTACATAGGTGAAGATGCACCATCCGACTGTGGTGGCGCAAGGAGAAAAATTACAGTCCTACAGAAAAAAGGGAAGTGGAAATCGGTTTCCAAGGTCATGGCTGAAAGAGGTTATCGTGTTTCACCTCAGCAGTGTGAGGATAAATTCAATGATCTCAATAAAAGGTACAAAAAACTTAATGATATGCTAGGCCGGGGAACTTCTTGTCAGGTTGTTGAGAATCCTTCTCTATTGGATGTGATAGATTATCTTTCTGAGAAAGAAAAAGATGAAGTTCGAAAAATATTGAGCTCGAAACACTTGTTCTATGAAGAGATGTGTTCTTACCATAATTGTAACAGGTTGCATTTACCCCATGATCTGGAATTGCAACGATCACTTCAGTTGGCTCATAGAAATAGAGATGATCATGACAGTGATGATGTCAGAAGGTCTCAGCATGATGATCATGATGAAGATGATCCAGAAGTGGAAACTGATGATCATGATGATTTTGAGGAGAATTATGCTACTCATGCAGATAGTAGAGGAGTCTATGGGGAAGCGGGGCGACCTATGAAGAGATCGAAACCAGGGCAAGGACATGAAGATGCTGCTACTTTTGGCAGTGCTTTAAACAGCCAAGAGTATAACAAAAGTTCATACCCTCATATGGTTCAATCTGATGTCAATCAAGCTGCACCCGAGAAAATGAGTTCACCATGGTTACAGAAGCAATGGGTTGATTCTCGTTCACTTCAGTTAGAAGAGCAGAAGCTACAAATTCAGGTTGAGATGTTGGAGCTGGAGAAACAAAGATTCAAGTGGCAGAAGTTTAGTAAGAAAAAGGACCGGGAGTTGGAAAAGTTGAAGCTGGAGAATGAAAGAATGAAGCTTGAGAATGAACGTATTGCTTTAGAACTCAAACGAAAGGGAGTGGGTGCTGACTTTAACTAG


Promoter Sequence:
>Vu_16166::LG4:17770041-17772041(-)
TAACAAAATAAAATTGTAATTATGATTACTTGTGTAAAATTAATAATTTAACTATTTAGTGAATACAAAATTGAAAATTGAAATTTAATTGTATACATTTAAAAGTTAATTCTGCTAAACAAAAGTGAAAAAGAAATCTCAATATGGACTGATATGATTTATTTTGGTTGACCAAAACGTCAGGAAAATATACGTTAAATACTTTTTAATATGTATTATTAAAGATTCTAATGTCATTGTTTTGTCAGGACTTAAGTAATTTTGAGCTGGCTTTGCATGATAAAGTATTTATGTTTAGTAATTTATACATGTGACTTGCAGTCAGTGATATGAGAAATAATTAGTCTGTATTGATGTAAAACATTTAAAATAGTTAAAAATAAAATTAAAGCATTAAAAGCTATATAGTGAAAAACAGCACAACAATCATGTAGAAGTATTATTGTTTTTGTTTCTTTTAAGGCTTTACTAGTTAGTGAAAATTAAAAAAACTAATTAATGCTCTCATCTTATATTTAATATCATATATTTTATTTGTGTTGATTAATTTTTATGGTTTTTTTTAATGTTTTCATCTTTATAATTGTAACGTGCATGGAATCATACAAAATTAAAAAGAAAGTAAAATTATTATAGTCTAAAAATAATAACTAACATTTATTTTACCTTTTCAAATAAGAACTTAACTTTCATTTTATAACGAATAAGAAAAACATTAGCTTTTATATTCATAAGTAATATTTAATATGATTTTAATTGTTTCATAAGTTACAAATGTTTATGTTGACAAGAATAAAAGACACATTTCTAGTCTCTTTGCATTTTACAAAAATAATAAATAAAATTTAATGATTTACAAAATGAAGATTTGATATGAATGGTTTGAAGGAAGTGATTAAGGATAAATTTTAAATTTAAGAAAAAAGTTATAATAGGAACTAAATACAACATAGAAACATGTGAACCAAAACCTCGTCTTCTATATATGCTTCTTTAAAATAAGCTGCTAAAATAATACATAGATAAAAGGCAATATAAAATTTCGATTTTTTTTTCTTTAACAAGTGTTTAGTACAAGGACAAGTTGTCGTTTCCTATAATGTGATGTTAATAATGATTAATTTTCATTTTTGGATTATTCTTTTAGAAAATAACGTAGCCAGCAAATAATGCTTTGTAAAAATGTGTTTTTATTTTTTTTGTTTGTCATCATCTTCCAAATTGCTCCTAAAATGTATCATGAAACAAATATACCATATTAGTTTCATTAAATAATTTATTACAGTGAATGATTATAATTTATGATAAATATACCCAGTCACTATTTAAATCCAAAAACTTATTAAATACTATTAATAATATTTACAACCATCAAAACATATTTTCAGTCTTTTCTGAGGATTATCGTTCCAAGATTCACGATTCATGAGATATGCAGATATGAAAAAACACATTTTAGCTAGTATTTCATAAAGAGAAGAGAAAAAATAGAAAAAAAAAATGCATGGAGTAAAGAAAATAAAAAATGCAAATAAAAATAAGATAAAAATAAAAGTTATTCACTAATCACTAACTCTTGGGAATATTACTAAAATATACTCCTCAACACATTTTTGACCACTTTTTTAAAGTTAAAATATATTAAAAATATTGCGAATCTCATATCATATTTATACTTTTGAATAAAGTTTAACAAATAAAAGAATTCTCTTAATGCTCATTAGAGATAAAAGTTAAACCAAATAGATATTTCAGAAACCAAAAAGTCGTAGGAGCACTAAAGATTTGAATATAATACCTTTCAAGGAAATTTTAATTTTTATTATTAACTTTAATTTGATTATTGAATGTTATTTTATTTTCTTTATTGTGAAAGAAACAAAAATATATACTAGCCTTGGTCCATGTCATCTTTTCATACATTGAACCATTAAGGTTCATCGCTGTCGTCCTTAGTAACCCTTGTCTTTATATATAAATATATTTCGTGGTCGCATAGT


Gene Sequence:
>Vu_16166(-)
AACTTGCACATATCACAAAACACCAACCCTTGTCTTTTCTTCACCATTTTACCCCCTTTTTCCTTCTTTGTTGCCGCACTTCTTCACTCCCCAGTTAATGAGCATGTCTTGTTTTCTGTAGCTGGTTTTTGTTTCGGGATTCTTGGCTTGATTTCGAGAAAAAGGTCCAATCTTTTGCTTTTGGAGTGTCAGATTTTGTGCAGATTTTCAGCAAGAAGTTGCTTACATTCCTCACCGGTGAGCCTCTTAAAGGGTTTTGGCTTTCGTTGTGAATCTTTGTTGAAAATTTGTTCTTTATTCTGCTGGTGGGTGATTTTAGCACTTCCGTGTGGGTTGGGAATTTTGGTGCATGTAATGATGTTTTGGAGAAGGGTTGTACTGTTCTAGTTTGATTTGGGTGCTGTTTTTACTTGAAAATCTAGAGTGATAGCTGGGGTTTCAGAAGATGTGTTGGAAGATTGGGTAAACATGGGTTTGTGTGATTTTGATGTTTGCGTTTTGTAAAGAGCACTTGAAAATGCTTGTGAAGTAGAATTGGATGTGAAGTGGGTTCGTTGGTTTTGATCTGTTTTTATTGTTTGTGAGAACTGAGAAGCAATGGAAGGGAATTTGTCTCAGGGAGGTATGGTTCAGGGTGGGAGTTCCTTTGGTGGTTTTGATCTGCCTGGATCAATGAGGGTTCATCGGCAAGGGCATCATCCTCATTCCATGAATCAACATCAAACTCATCCTTGTCAAGGGCCTTCAGTGCATTCCTCAGTTCATGATGGTTTTCCTCTCACAATGGGAACCTTGCAGAACTGCGATCAAACAATGGCAATGACTGAGTTTAGTCAGGGAGATAGAAACAAGAACTCTCCAAGTGATGAAAGCTTTGCTGAGGAAGGTGTTGATGGTCATCAAGAAGGAGGTAGAGGGAAAAAGGGGTCGCCTTGGCAGAGGGTGAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACGGCTGTTTCTTACATAGGTGAAGATGCACCATCCGACTGTGGTGGCGCAAGGAGAAAAATTACAGTCCTACAGAAAAAAGGGAAGTGGAAATCGGTTTCCAAGGTCATGGCTGAAAGAGGTTATCGTGTTTCACCTCAGCAGTGTGAGGATAAATTCAATGATCTCAATAAAAGGTACAAAAAACTTAATGATATGCTAGGCCGGGGAACTTCTTGTCAGGTTGTTGAGAATCCTTCTCTATTGGATGTGATAGATTATCTTTCTGAGAAAGAAAAAGATGAAGTTCGAAAAATATTGAGCTCGAAACACTTGTTCTATGAAGAGATGTGTTCTTACCATAATTGTAACAGGTTGCATTTACCCCATGATCTGGAATTGCAACGATCACTTCAGTTGGCTCATAGAAATAGAGATGATCATGACAGTGATGATGTCAGAAGGTCTCAGCATGATGATCATGATGAAGATGATCCAGAAGTGGAAACTGATGATCATGATGATTTTGAGGAGAATTATGCTACTCATGCAGATAGTAGAGGAGTCTATGGGGAAGCGGGGCGACCTATGAAGAGATCGAAACCAGGGCAAGGACATGAAGATGCTGCTACTTTTGGCAGTGCTTTAAACAGCCAAGAGTATAACAAAAGTTCATACCCTCATATGGTTCAATCTGATGTCAATCAAGCTGCACCCGAGAAAATGAGTTCACCATGGTTACAGAAGCAATGGGTTGATTCTCGTTCACTTCAGTTAGAAGAGCAGAAGCTACAAATTCAGGTTGAGATGTTGGAGCTGGAGAAACAAAGATTCAAGTGGCAGAAGTTTAGTAAGAAAAAGGACCGGGAGTTGGAAAAGTTGAAGCTGGAGAATGAAAGAATGAAGCTTGAGAATGAACGTATTGCTTTAGAACTCAAACGAAAGGGAGTGGGTGCTGACTTTAACTAGGTTGGTCGTCTTGCATGCTTTTTTTTTGAAACGACATTAGATGCATGATGCTCCTTTGTTTTCCAGCTATCTTTGATGAGCTGTGTTTGTTTAGTTGAAAGTATACAATTTTTTATGGGGAAACTTAGGAAAGAATGAGATCCCGTGGTGCTGTTTAGATTTATGAATTTGAAAAATCCAGTAGGTCACACAGAGATTCACTTATTATTAGGCTTTACTGAAGCTCTGTTGCTTTATATACTGTGTGGCTAATAATGCCTTTTCACTTAGTTAAAAGTAGCATATACCATTATGATG