Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15989 LG4 13499731 13503468 "PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic isoform X1 "
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   seed development, protein-containing complex assembly, seed development, negative regulation of gene expression, seed development, response to light stimulus, protein-containing complex assembly, seed development
Cellular Component   located in   chloroplast, chloroplast
Molecular Function   enables   aminoacyl-tRNA hydrolase activity, aminoacyl-tRNA hydrolase activity
Pathway   B 09182 Protein families: genetic information processing   C 03012 Translation factors [BR:ko03012]
SNP Position Effect Amino acid change
C/T 13499970 synonymous_variant p.Gly80Gly
G/T 13500009 missense_variant p.Leu93Phe
C/A 13500029 missense_variant p.Thr100Asn
G/C 13500031 missense_variant p.Gly101Arg
G/C 13500104 missense_variant p.Gly125Ala
G/A 13500120 synonymous_variant p.Gln130Gln
C/G 13500139 missense_variant p.His137Asp
C/T 13500176 missense_variant p.Ser149Phe
G/A 13500178 missense_variant p.Gly150Ser
G/T 13500196 missense_variant p.Val156Phe
C/G 13500207 missense_variant p.Asn159Lys
C/T 13500238 stop_gained p.Gln170*
C/T 13500244 synonymous_variant p.Leu172Leu
C/G 13500254 missense_variant p.Ser175Cys
G/A 13500277 splice_region_variant&intron_variant
T/A 13500308 upstream_gene_variant
G/A 13500309 upstream_gene_variant
C/T 13500366 upstream_gene_variant
C/A 13500377 upstream_gene_variant
A/T 13500423 upstream_gene_variant
T/A 13500439 upstream_gene_variant
C/A 13500449 upstream_gene_variant
G/A 13500490 upstream_gene_variant
A/G 13500505 upstream_gene_variant
G/A 13500756 upstream_gene_variant
T/A 13500787 upstream_gene_variant
C/T 13500811 upstream_gene_variant
T/C 13500995 upstream_gene_variant
T/A 13501086 upstream_gene_variant
G/T 13501189 upstream_gene_variant
G/T 13501349 upstream_gene_variant
G/A 13501356 upstream_gene_variant
T/G 13501364 upstream_gene_variant
C/A 13501409 upstream_gene_variant
G/A 13501506 missense_variant p.Arg209Gln
G/A 13501601 missense_variant p.Ala241Thr
A/G 13501919 upstream_gene_variant
A/C,* 13502096 upstream_gene_variant
G/A 13502105 upstream_gene_variant
G/A 13502182 upstream_gene_variant
G/T 13502326 upstream_gene_variant
T/C 13502401 synonymous_variant p.Val353Val
C/A 13502528 upstream_gene_variant
T/C 13502545 upstream_gene_variant
A/T 13502574 upstream_gene_variant
C/A 13502796 upstream_gene_variant
C/G 13502880 upstream_gene_variant
A/G 13502900 upstream_gene_variant
G/A 13502917 upstream_gene_variant
A/G 13502941 upstream_gene_variant
G/T 13503050 splice_region_variant&intron_variant
G/T 13503056 splice_acceptor_variant&intron_variant
G/A 13503120 splice_region_variant&intron_variant
C/T 13503135 upstream_gene_variant
C/G 13503161 upstream_gene_variant
G/A 13503165 upstream_gene_variant
T/C 13503166 upstream_gene_variant
A/T 13503219 missense_variant p.Tyr394Phe
T/C 13503220 synonymous_variant p.Tyr394Tyr
C/T 13503350 upstream_gene_variant
A/G 13503382 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15989.1
MPSPSSSSSAYSLYNSYMVSNFMVSIIVPLFLFSLFVVHVSSCSQIDKLSLLAFSGNISTSPPFPSLNWSDSLDCCAWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGGLQHQLFSLLSHLVVLDLSYNHLSGELPPFVGDNSGKNSSGAAIQELDLSSNFFNILGTRSNGWEGGFIKELATATISIRSMLHAASAPGLCLSYPRNIRHPCFLKTPSVKTRHSVRCSVSQTSNGAKVEYTPWLIVGLGNPGNKYHGTRHNVGFEIIDSLSREEGIKMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESVGPLAAYYQVPLRHILLVYDETSLPNGVLKLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAVGIGNPPGTMDLRAFLLQKFSSVERKQKINQFCYNYTALNTDKSVKYCYKL*


CDS Sequence:
>Vu_15989.1
ATGCCATCACCATCTTCATCTTCCTCTGCATATTCCCTTTACAATTCTTACATGGTTTCCAACTTCATGGTCTCTATCATAGTCCCCTTATTCCTCTTCTCCTTGTTTGTTGTTCATGTTTCCTCTTGTAGTCAGATTGATAAACTCTCCCTCTTGGCTTTCTCTGGGAACATATCCACCTCTCCACCTTTTCCTTCTCTGAATTGGTCTGATTCTCTTGACTGCTGTGCTTGGGAAGGCATTACTTGTGATGGGGATCTTAGAGTCACACATCTTTTGCTACCTTCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAACAGATTATCTGGTGGTCTCCAGCACCAGCTTTTTTCATTGCTCAGTCACTTGGTGGTTCTTGATTTGAGCTACAATCATCTGTCTGGTGAATTGCCACCTTTTGTCGGTGATAACAGTGGCAAAAATAGCAGTGGTGCTGCTATCCAGGAGCTGGATTTGTCCAGCAACTTTTTCAACATATTGGGAACTAGATCCAACGGCTGGGAAGGAGGGTTTATCAAAGAGCTTGCTACTGCTACAATATCTATCCGATCGATGTTGCATGCGGCATCTGCCCCAGGCCTTTGTTTAAGCTATCCGAGGAACATTCGCCATCCTTGTTTTTTGAAAACACCTTCTGTTAAAACAAGACATTCTGTTCGCTGTTCGGTATCACAGACAAGTAATGGTGCTAAAGTGGAATATACTCCTTGGCTCATTGTTGGCTTGGGTAATCCTGGAAACAAATACCATGGCACTAGGCACAATGTTGGATTTGAAATAATTGATAGCCTTTCTCGAGAAGAAGGGATTAAGATGAACACAATACAGTCAAAGGCCTTGATTGGAATAGGTTCCATCGGAGAAGTACCAATTTTGTTGGCAAAGCCTCAGACATACATGAATTTTAGTGGAGAGTCGGTTGGGCCACTTGCTGCATATTATCAAGTACCCTTGCGTCATATTCTACTAGTTTATGATGAAACAAGCCTGCCAAATGGTGTTTTAAAGCTTCAACCAAAAGGCGGACATGGACATCACAATGGATTGAAAAATGTGATGGGCCATTTGGATGGTTGCAGTGCTTTTCCTCGACTTGCAGTAGGAATTGGAAATCCTCCTGGAACTATGGACTTGAGAGCATTTCTTCTACAAAAATTCAGTTCTGTGGAACGAAAGCAGAAGATCAATCAGTTCTGTTATAATTACACTGCACTTAATACTGATAAGTCTGTCAAATACTGTTATAAGTTATGA


Promoter Sequence:
>Vu_15989::LG4:13497731-13499731(+)
ATAACTTGACTTGCAAATGTGAGCTAGATGATCTGACCGAATGATTTAACTTGATATGTGTATTGTTGATATGAACTTTTAAGAATGTAGATGTTGATCTTCAATACGATGTATGCTATGAGTTTCCCTCTTTATCTGAATCAATGGTTTCAGTATGATAGTTATGTTTAAGAAATAGAATTGAAATAACTTGCTTCTTTATGCTTTATTTCCTTCACTGAAGCTAGTAGTTCACTTGTACTCGTTGAGGAAACATTTATTATGTTTTGTTTAATGAGTAAATAGCTATTGTATTTAGTTTAATGGTTTTGATGTGATTACCATATACATTGTTAATTGAGAAGCCATAAGTTGCTTTGGGTAATTGTAGCTTGATCAAAGAAAGGAAGCTCAAGCTCTTCCTCATCTTTGTTAATTTGTACTATCAAGGAATTACTTCTTTCACAAGACGGAAAGATAATATTCCGTTAAACTCTAAAATGGCAAATTATTGAATTTGTTTTTGTTTAGGAATTTGTGGATGCCCACACTGGCCACCTGCTAGCAGGGTTTAGCTCTGCAACTCCTTTCTCTGCCTCATCAAAATCAAAAAACATCCTTGTCCTCTTTATCTGTCCCTTCATGAATTTACTAGGTTTATCTATAACTTTACCCAGGAAAATGTCATCATCTAAAAGCCTAGCTTTTGCCAATTCATCTTGTCCCTCCTCCTAGTTTACTTCCCCTTTGTTGACAATGGCATAGTACCTTATCTGCTACTCTTCTTTTTCTTAATTACGAATAATCTTCTGCAGATCAAGCTTTGTTTGTCAAATCTGCTTCTACTTCTTTTACTGCATTATTTGTTTAGGTGGATGATATTTTTTTAATTAGCAATGATATGGCAGAAATTAATCATCTTAAGCACATCTTAGATACCAAATTTAAAATCAAAGACCTAGGATCTTTAAGATACTTTCTCGGTCTTGAAATTGCAAGGTCCAAATCTGGAATTCACATGAATCAGAGAAAATATATTCTTGAACTTCTCGATGACAGTGGTTTGATTGGTTCTAAACCTACTAACACTCCTTCTGATCCTTCTATTAAACTTATGGCAAATCATGGACAACTTTTATCTAATGCTGCTGGTTACTGGCAGTTAGTTGGCAAACTTTTGCATCTCACCATCATCAAGCAAGATATTGATTATGTGTACAACAACTCAGCCAATTTCTATGCAAACCTCTTGATACTTATTACAATGCTGCTCAAAGAATCTTTCATTACCTCAATGGATCCCCTGCTCATGGCTTGTTCTTCTTTGCTTCATCAGACCTTAGACTCTCGGCCTTTGCCAATTCAGATGAGCTTGCTGTTTGGATACCAGAAGGTCTATCATTGGCTTTTGAGTTTTTGTTGACTCTTCATTGATCTCTTGGAAATCAAAGAAGCAGACTACTGTTTCCTTTATGTAAGATACCTTTTTCTCAATTTGAATACAATGAGAATTCTTGCAAAATGTGAGAACTAAGAAAACTGTTGTGTCTGCAACCTCTATATAATATAACAACTCAACAACTATTTTCTACTTTCTTTAAGATCAATAGTAGAACAACAACTATATCAAAAATCTTTCTTTTCTTTTCTTTTCTTTTCTTGCTTCATCCACAGTTTTTCAAAATAAACATAAACACCAGATGAATTATATTTACTATGAACTGCAATGAGTTGTTACAGTGGTAATGATAATTAAAATCTAAATATTATCTATGTGTATGTATATCTAAATCCCCAGTTGTCAACGTCACCCTTCCACTTTCTCTCTCTCTCTCCCACCCTTCATTTTGCTTCCCTTGTCAATGGATGGTCATGGTCTTCCTTGCTCCCATGCCACCCCAACTATCTCTTCTTACATTGGTTCTTCACCCCCTTATGTCCCCCTCCTCCTCTTCTTTCTCATTTCCACTCTCTCATGACCAACCATCACTTCAAACACTCCATTCTCTCAGTTTTTCTCA


Gene Sequence:
>Vu_15989(+)
ATGCCATCACCATCTTCATCTTCCTCTGCATATTCCCTTTACAATTCTTACATGGTTTCCAACTTCATGGTCTCTATCATAGTCCCCTTATTCCTCTTCTCCTTGTTTGTTGTTCATGTTTCCTCTTGTAGTCAGATTGATAAACTCTCCCTCTTGGCTTTCTCTGGGAACATATCCACCTCTCCACCTTTTCCTTCTCTGAATTGGTCTGATTCTCTTGACTGCTGTGCTTGGGAAGGCATTACTTGTGATGGGGATCTTAGAGTCACACATCTTTTGCTACCTTCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAACAGATTATCTGGTGGTCTCCAGCACCAGCTTTTTTCATTGCTCAGTCACTTGGTGGTTCTTGATTTGAGCTACAATCATCTGTCTGGTGAATTGCCACCTTTTGTCGGTGATAACAGTGGCAAAAATAGCAGTGGTGCTGCTATCCAGGAGCTGGATTTGTCCAGCAACTTTTTCAACGTAATCGCCTTAAAGTGAAATATTAAAATATTAGGCTTGTTTTGATATTAGTTAACATGTCTGGTCCTGACTTAAGCTAGAAAAGACATGTTTTGCGCTTACATTGCGTGTTAGATGACACCCACCGTAGTGATATTGCCCTTGTATTAATTAAATGCAATTCAAAAATAATGTCATTCTACTTTTATAGCATATTTTTGGTGATACATCTGAATCCACGTATTCACACTTTATACTGCAAATCTTTCCACCTAACATTTCATCTCATAGCTTCTATATAAACTTCTCTTTTCAATTACATATTCACCAAAGTTCAGATTTTAAACAAGAAAAACAATTGGATATATACATTTAGTATTTGTAGTGATGATTTTTATTTGTGTAATAAAAAAGAGAGGCTTTAATTTGAACTAGATATTGGGAACTAGATCCAACGGCTGGGAAGGAGGGTTTATCAAAGAGCGTAGGATTAGATTAGATGAAAAGGAAAGGGAGAAGAACAACATAGATATCCGCTAACTCTTTTTTGTGTTTTGTTTTCTGATTTTGTTTCGTTTGCAATTGCAGTTGCTACTGCTACAATATCTATCCGGTAAGCACTGTCTCTGTTCACTTTCTCATTTATTTCTTTACATTATCTATCCATTTCCCTCAGTTTCTCCTCTTTTTTTCCCATTCCCTTTTTCATCTAATTCTGTTCTTCCGTTTCATCTAAAGTCTCAAATTTTAGCTTTGTTGGAAAATCTTAAGAGAGCGTTTTATGCAAGAATCCCTTTGTATGATAGGTTTTCTTCGCGGACAGTGATACCAACTGTTGGGGTTTTCTTTGTTCTTGCTGCCATTTAGATTTGGAGTGTTCTGTTATTTCATAATTTGTATTTAGCACTTATGAATTTATTAGTTATTGAGTTATTTTATGACCTATGAAAGCAGTGGTGTTATGTATTCGATCTTAGTATTTGTGATTTATCATGAGTTGTTTTTCTTGTCTATATTTTCTGTAATTTACGTTCATATCTATGAATATAGTGTTTGGTGTATGCATATCTCTTATGAGTTACTCGAGTTTGACAACATTGGTCCAAGCAAAAGTTTATAATGTTGAGGTTGTAAGTGGTTTTACTGAAAATTGGGTTTACTGATACCTTAGTTGTTATTGTCAATTATATAATGAGATGTTTTTTCATACTCATTTACATATCCTTTTCATATTTGGACAGATCGATGTTGCATGCGGCATCTGCCCCAGGCCTTTGTTTAAGCTATCCGAGGAACATTCGCCATCCTTGTTTTTTGAAAACACCTTCTGTTAAAACAAGACATTCTGTTCGCTGTTCGGTATCACAGACAAGTAATGGTGCTAAAGTGGAATATACTCCTTGGCTCATTGTTGGCTTGGGTAATCCTGGAAACAAATACCATGGCACTAGGCACAATGTAATTGTTCAGTTCTTTGTGAAATTGCTTGAAATTGAATACAATTTAATTTTAGCGAATCTTATGGTTTGCCCTCTGTTAGGTTGGATTTGAAATAATTGATAGCCTTTCTCGAGAAGAAGGGATTAAGATGAACACAATACAGTCAAAGGCCTTGATTGGAATAGGTGCATCATCCTCTAAGCATTGATTTTATTTTGTTATTTCCCTCATAGTTTTGGATTACATGGAAATTCTAACACTGACTTATATTTTCTTCCGTGATCTGTACAGGTTCCATCGGAGAAGTACCAATTTTGTTGGCAAAGCCTCAGACATACATGAATTTTAGTGGAGAGTCGGTCAGTTTCTACTGTAAATATTGGATAGATTTTTTATAAGACACACAAATACTTTAGTTTTCATCATACATTAGTAGAGAGATAACTGTTGAAACTGACAGTCTTTGATCTGTCAGTTTTTGTGTTTCTTTTTGGTTCCTAATTTTATCTTACTTCTAATATTCTTGAAGGTTGGGCCACTTGCTGCATATTATCAAGTACCCTTGCGTCATATTCTACTAGTATGTATTTCTTACCTTCTGTTTAATAGCAGTTAACGACAATTTACATGTGTTTTGCAATTTTCATTTAGCCGTAAGTTTTTGGGAAATTTTATGCAGGTTTATGATGAAACAAGCCTGCCAAATGGTGTTTTAAAGCTTCAACCAAAAGGCGGACATGGACATCACAATGGGTAATGCTTTTGTTCTATTCATTTTAGTACTTTTTATATATCAGAACAAAACATGATTTCAGAAATTGAAATCATAGGTCTTCAGCAAATATTCGGTATGAATAGAGAGACAGTGAACAGGCCTTTTATAAACTTCTTGACATAAGGCTGAAATTGAAATATCAAAAATTAAGGTTACAGTGGGTGCAGTAATCGTGGCACATAAGGTGGACAGGAAGACCATTGAAATTTCTTATTGAGGAGGTGGTTTGTGAATGAACACAGCTGTATCACATTTTTGTTTAAACTCTAAAGTAGATTTCTTTTGTTTGAATTTTAACTTGATTGACACTTATTATGCTCTAACATTAATTCTCTGTTTTCTTTGAACTAAAATAATGATTTGAATCTTATCTTTTGTAAACATAGGATTGTAGCTGTTTTATTTTCTTAGAAGACTTTTACTCCAATACAGTTTATTATCTCATATGACTTGAATGTTTTTATTGATAACACACCAAGGAAATCATCCTCATACAGACCAATTTTGTTTTAAAGAAATGCATTGGGAACTGGTATATTTTTTACTGTAATGGGAAATATTAAATTCTATAGCTGGTTTTACATTGCTACAGATTGAAAAATGTGATGGGCCATTTGGATGGTTGCAGTGCTTTTCCTCGACTTGCAGTAGGTTAGTTCCTTGCCTCAGTCACCTTGACAAGGTTTCTTCAGTTGTCCCAGTAGTACTGTATTTCAAATTTGTGTTTGTAGGAATTGGAAATCCTCCTGGAACTATGGACTTGAGAGCATTTCTTCTACAAAAATTCAGTTCTGTGGAACGAAAGCAGGTTACGTCTAGTCTTCTACCAAGTGTGAATTGGTTTAGTTCTTTTATAATTGCTATTTGCATAATACTTTACAATCGCCTGTTATGTCTTGTTATTTATTTTGACTGGAACTTAATTGTAGAAGATCAATCAGTTCTGTTATAATTACACTGCACTTAATACTGATAAGTCTGTCAAATACTGTTATAAGTTATGA