Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15987 LG4 13486081 13486629 PREDICTED: zinc finger protein 6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of abscisic acid-activated signaling pathway, trichome morphogenesis, negative regulation of abscisic acid-activated signaling pathway, cytokinin-activated signaling pathway, regulation of transcription, DNA-templated, cytokinin-activated signaling pathway, cytokinin-activated signaling pathway, gibberellic acid mediated signaling pathway, trichome differentiation, trichome morphogenesis, trichome differentiation, cytokinin-activated signaling pathway, gibberellic acid mediated signaling pathway, regulation of transcription, DNA-templated, trichome morphogenesis, regulation of transcription, DNA-templated, cytokinin-activated signaling pathway, gibberellic acid mediated signaling pathway, cytokinin-activated signaling pathway, trichome differentiation, gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, cytokinin-activated signaling pathway, gibberellic acid mediated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, gibberellic acid mediated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, trichome differentiation, cytokinin-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, gibberellic acid mediated signaling pathway
Cellular Component   is active in   nucleus
Cellular Component   located in   cytosolic ribosome, cytosolic ribosome
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 13486263 synonymous_variant p.Gln61Gln
T/A 13486272 synonymous_variant p.Gly64Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15987.1
MAEVEYHAKSTANTPPLKLFGININKSPEDQTDREAGSDSEPFIARKYECQYCFREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHVHNTIVSTFSPQSQPPLSWLCTPHAWSGGGAYDSGVAFVTPGRRVYATAGASITGGLGHRNPPAEIGGFNGHSFNGRGNGGGGLDLHLSL*


CDS Sequence:
>Vu_15987.1
ATGGCTGAAGTTGAATACCATGCAAAATCCACTGCTAATACCCCACCCCTAAAGCTCTTCGGCATCAACATTAACAAGTCCCCAGAAGATCAAACCGATCGCGAAGCAGGTTCCGATTCTGAGCCTTTCATTGCAAGAAAATACGAGTGTCAGTACTGTTTCAGAGAATTCGCAAACTCACAGGCACTTGGTGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAACGTGCTCAAATGCAGGCTGCTCGCGGCTTTGTGGCTTCACACGTTCACAACACCATCGTATCAACCTTCTCACCACAATCTCAGCCACCTTTATCGTGGCTATGCACACCACATGCATGGTCAGGTGGTGGTGCGTATGACTCGGGAGTGGCTTTTGTGACTCCCGGAAGACGAGTCTATGCCACGGCCGGTGCCTCCATCACTGGTGGCCTTGGCCATCGCAATCCTCCGGCGGAGATCGGTGGCTTCAACGGCCACAGCTTCAACGGCAGAGGTAACGGTGGTGGTGGTTTGGATTTGCATCTTAGCCTATGA


Promoter Sequence:
>Vu_15987::LG4:13484081-13486081(+)
ATTAGAATTACTATCGAGATATTTTATTATTTATTATTTCTATTATGTTACCTATTATTTGTTATAAAATCAATTTACATTAAATATGTAACAAATCGATTTTGTATGATTGAATTAAACTTCAAATTTACTTTTAACATTTATTTCTTTATATTTTGTTTCTTTCACAAAAAAAAACAATTTATAATATGTAATTAAATGCATATTTCACCATAGAAACTATTTTTGTTTTTGTTTTTGTTGAATTGACTTATATTTAAAGGATAGTGAAATTTATATAAAAGAGAATTGGATCGATGACAAAAACATACCTAATGATGATAATGAATCATGAAGGGTCTGCACTTTAAGTGTTTGAACAAAGTCCACAGGGGTAGGGTAAGCTCCTTAAAAATATCCTGAACATTTTTCACTAGCTAAATGTATCATAGTCTCTAACCCTATGTTAGATTGCTGCTAGCTAATTTGTTGTCATCATTGACTATTAAAACAGGGCAATGAAAGTGAGTTGAGTTTCAGTAACAATATAAAGAATGTTTATACAATAAATGATAAATATTTGCCTCTTACTAAATTTTATAGATAAAAAAAATGAAAAAGCCATTTTTGAATTATTATTGCTCAATGGAAATTTTCACTTTTTCCTCACTTCCGAATTTCATCGACTACATCATTCGGACAAAAGAAAACACCTTACAAGTTACAACATGGTATTTAGTTTTTAAGAAAAAAATGTGAAGTTAAAATTCTTTAAAAAAGTCCGATGTTAAGTTAACAAAATCTGATTTAAAGTAAATTCAAAGGTAGCAATTAATTTATAGGAATGTGGGTGTGGTGTAATAGTAATCACGTGCATCATGGATGAGTTTGCAGTCTGTTGTCAACCGTTGAAATGTATTAACATGTGAAGTGATGATATCATGATAATACATTGAACCCAAGTGATGGAAGTTAGTAAGATTCTTGCAGATTTTGTCTCAATAATTAATGACTAACTCAACGTCAATCACGCAAACATGCTTCACATACCTACCATTTTCCTTACCTCAATCCACTTGGATCATTCATTTCAATATTCTCTCTCCATCTTTGACTTCCAATCAATCAACCTATTCTCGATTGCTGTATGTTTTTCGCCTTGCAAAATGCCCTTTTTTTCCTTTTCGGATACTAATGATTTTATCACAATATTAAACTAACACTTTAATCAAAGAAGATCAACAAATTAACCATCACTTTAGATTTTACTTATGGCACCAATGATGTCAAGTTCGTTCATACTGAGTTCATATACATCTTCCTGGTTTTTGAGCCATGCCAAAAAAGGTCTGACACATGGTGGAGTCATTATATATATGCTTGAGCTAGATTGCTAACGTATCTAGCTTTCACAGCCAAAACCTAGATACCCTTTTGTTTTATATGCCTAAACCACCCTCACTTATTATCATTTTTTTATCTAATAGGTGTCTACTATCAATTATGTATCAGTATGATTAACATAGATGCATATTTCGATGTATAATATTTATTTACACTGCATCAGTGGAACTGGTTTTTTATACTGTACTGATTTGTGAAAGTAGCTTTTTTACCACATCATCAACCGTATCAGTTTTCTATTACATAAATTACTACATTGTACGAGAATATCATAGAACTGATCAATCTCCACTTTATCATGCAGACGAGGTCTGATAATTTTACTTTTATCTATGTGTAAACTTATCTATGTTATGGCCACAGCCCAACCCTAATATAATAGCTACTTCCACAAATCATAAAATACTAAAAATCGTATACGTAAAGCTGCCTTGGTTTTCGTTGTTGAAACTTTCACAGCGAAGTCTCACTCGAACCCTTTTATAAAGCCTCTCATACTTTGTAGTTCACACACACATCCATGTCCACATTTAGTGCTTAACCACACAGTTTGGTTCATCATCTTCTTAATCACTTTTCTTTCCAATAGAGATAGATATCTTAATTTCCTTCCATCA


Gene Sequence:
>Vu_15987(+)
ATGGCTGAAGTTGAATACCATGCAAAATCCACTGCTAATACCCCACCCCTAAAGCTCTTCGGCATCAACATTAACAAGTCCCCAGAAGATCAAACCGATCGCGAAGCAGGTTCCGATTCTGAGCCTTTCATTGCAAGAAAATACGAGTGTCAGTACTGTTTCAGAGAATTCGCAAACTCACAGGCACTTGGTGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAACGTGCTCAAATGCAGGCTGCTCGCGGCTTTGTGGCTTCACACGTTCACAACACCATCGTATCAACCTTCTCACCACAATCTCAGCCACCTTTATCGTGGCTATGCACACCACATGCATGGTCAGGTGGTGGTGCGTATGACTCGGGAGTGGCTTTTGTGACTCCCGGAAGACGAGTCTATGCCACGGCCGGTGCCTCCATCACTGGTGGCCTTGGCCATCGCAATCCTCCGGCGGAGATCGGTGGCTTCAACGGCCACAGCTTCAACGGCAGAGGTAACGGTGGTGGTGGTTTGGATTTGCATCTTAGCCTATGA