Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15981 LG4 13430665 13432740 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 13430682 synonymous_variant p.Asn6Asn
T/C 13430790 synonymous_variant p.Leu42Leu
C/G 13430895 splice_region_variant&intron_variant
C/T 13430960 synonymous_variant p.Leu69Leu
C/T 13431128 upstream_gene_variant
C/A 13431167 upstream_gene_variant
A/T 13431173 upstream_gene_variant
G/A 13431211 upstream_gene_variant
C/G 13431299 missense_variant p.Thr102Arg
A/T 13431579 missense_variant p.Asn168Tyr
A/C 13431580 missense_variant p.Asn168Thr
T/G 13431595 missense_variant p.Leu173Arg
T/A 13431596 synonymous_variant p.Leu173Leu
C/A 13431603 missense_variant p.Pro176Thr
A/G 13431605 synonymous_variant p.Pro176Pro
T/C 13431625 missense_variant p.Ile183Thr
G/A 13431627 missense_variant p.Gly184Arg
G/T 13431630 stop_gained p.Gly185*
T/A 13431657 stop_lost p.Ter194Lysext*?
T/C 13431827 upstream_gene_variant
C/T 13431828 upstream_gene_variant
G/T 13431875 synonymous_variant p.Thr213Thr
C/A 13432020 missense_variant p.Pro262Thr
C/A 13432259 missense_variant p.Asn341Lys
T/C 13432261 missense_variant p.Leu342Ser
G/A 13432262 synonymous_variant p.Leu342Leu
T/A 13432265 stop_gained p.Cys343*
C/T 13432266 missense_variant p.His344Tyr
G/C 13432283 missense_variant p.Arg349Ser
T/C 13432330 missense_variant p.Leu365Pro
C/T 13432338 missense_variant p.His368Tyr
G/A 13432457 synonymous_variant p.Lys407Lys
T/A 13432482 stop_lost p.Ter416Argext*?
C/T 13432538 synonymous_variant p.Asp434Asp
A/C 13432544 missense_variant p.Arg436Ser
T/G 13432549 missense_variant p.Val438Gly
G/A 13432557 missense_variant p.Gly441Ser
A/C 13432584 synonymous_variant p.Arg450Arg
G/T 13432590 stop_gained p.Glu452*
A/G 13432643 stop_lost p.Ter469Trpext*?
G/A 13432644 missense_variant p.Ala470Thr
A/T 13432653 missense_variant p.Thr473Ser
A/G 13432737 missense_variant p.Ile501Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15981.1
MTRSPNAKLPSSGAKLLCKNPERGNENSDSLQRYHDNSVKELGGVSFTHISVPILKEHADRLVENRPLLGEILMKRFNVNNWKTGLYLSSPIFTVFSKRNNVRVAIGATVGGVAALVVILGCVYFIIQRRRKIYQKSRNMELFIAPNTFASTTITSQSLSSYQSSNPVTRSYYFGVQVFTYEELEEATKNFDASRELGKGGFGTVYKGELKDGRTVAVKRHNESNSRLIMQFMNEVQILARLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTVAYHLQGRGSKSTLLPWPIRLNIAVETAEALAYLHANDVIHRDVKTNNILLDDQFCVKVADFGLLRDFPTCVTHVSTGPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLRAVDFNRNGSDVNLSYMALRKIQNQELHELVDPYLGFEKDHAMRIMTTEVSTLAFRCLQQERDLRPCMDEVVEILRGIKSDELGAREETEILDIRTDEAILLKKAHSSVSNSS*


CDS Sequence:
>Vu_15981.1
ATGACAAGAAGTCCGAACGCTAAACTGCCAAGCTCGGGTGCCAAGTTGTTGTGTAAGAACCCGGAAAGGGGAAACGAAAACTCGGACAGTCTGCAGAGGTATCATGACAACTCGGTGAAGGAACTTGGAGGAGTTAGTTTCACACATATTTCAGTTCCAATTCTAAAAGAACATGCTGATAGGCTGGTGGAAAACCGGCCTTTGCTCGGGGAGATTCTGATGAAGAGGTTTAATGTGAACAATTGGAAAACCGGTCTTTACCTTTCGTCACCTATTTTCACTGTGTTCAGTAAACGCAACAATGTACGTGTAGCAATAGGCGCTACTGTAGGAGGAGTTGCAGCCCTTGTTGTCATTCTTGGATGTGTGTACTTTATTATACAAAGAAGAAGAAAAATTTATCAAAAATCAAGGAATATGGAGCTCTTCATAGCTCCAAACACTTTTGCATCAACTACTATCACGTCTCAAAGTCTATCTTCTTACCAATCTTCCAATCCAGTAACCAGGAGTTACTACTTTGGTGTCCAGGTCTTTACCTATGAGGAATTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTAAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTACAGTTGCAGTGAAACGCCATAATGAAAGCAACTCTAGGCTTATTATGCAGTTCATGAATGAGGTTCAGATTCTAGCCCGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTCTCCTTGTCTATGAATTCATACCTAATGGAACAGTGGCTTATCATCTTCAAGGAAGAGGCTCAAAATCAACTTTACTCCCTTGGCCTATAAGATTGAACATTGCTGTTGAAACAGCTGAGGCTCTAGCCTACCTACATGCAAACGATGTCATACACCGCGATGTTAAAACCAACAACATTCTCTTGGATGATCAATTTTGCGTCAAGGTTGCTGATTTTGGTCTCTTGAGGGATTTCCCAACTTGTGTCACTCATGTGTCAACAGGTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATTACCAGTGCTACCAACTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTTATATCATCATTGCGAGCTGTGGACTTCAACAGGAATGGCAGTGATGTGAACTTGTCATACATGGCTTTAAGAAAAATTCAAAACCAGGAACTGCATGAATTGGTCGATCCTTATCTTGGGTTTGAGAAGGATCATGCTATGAGGATAATGACAACAGAAGTGTCAACATTGGCCTTTAGGTGTTTGCAACAAGAGAGAGATTTGAGACCATGTATGGATGAGGTGGTGGAGATCTTAAGAGGAATCAAGAGTGATGAGCTTGGTGCACGGGAAGAGACAGAAATATTGGATATTAGGACTGATGAAGCTATACTTTTGAAGAAGGCTCATTCTTCTGTATCTAATTCCTCATAG


Promoter Sequence:
>Vu_15981::LG4:13428665-13430665(+)
TTATGCCAGCCAAATCAAGTCAACACCAGCCTTAACACTCAGCTCTACGTTTATGACTCACCCTATAACAATCTTTCCCTTTCCTATGGTTGCACTCCTTCAAACTCTTTGCCTCTCACCAATATTCCTTGTAATGGAACTTCTGGGGAAAACGTTTATTCTCAGTTTGGGTCACTTTCTCCCGTGTCTTGCAAAATAACTGTGGTTGTTCCGGTTCCTCAATCACTGCAGGAGATTAATAGTTTCATCAAAGTATACGAGGCAATCAAAGAAGGGTTTGTGGTGAGATGGATAATAGGTGTTGAAGAATGTGACAAGTGTGAAAGATCAGGTGGAGAATGCGGTTTAAGGGTCTTCGCAGCAAACATGTTACTGCAGAGATGGAGCTTGTTCTAATTTCTCACAAGATAGCGAAGCATCTTCAGGTATGCCTAAGTTTATTCAAAATTAAATTTTTCTGCTTTGCGTTTGACGATTTGCCACCGCATATGTGTCTCTTTTCCTAACTAACATATTCCAATGCAGTTCCTCCATCTGAACCAACCGGCCAAAAACGTCCAAAAACCGTGTGCAACACTGATTGAGACCTTTCTGTCATACTTCTAGATTTTGAATTAATAGCCACCATTTTGAACCATGCTATAACAGTTTAATTTGTGTATTGATTTAACTCAATATTATATACGCATCCTTCACGACAAAATAATTTCCTGTTCCACTATCATTAAGTGTATGAAACATGAAAAAGAAAATTAACCATAGAAATAAATTTAGATTTAGGAGTTATCAAAATAATTATTAAGAATGATAATGTTTATTATATTAGTTGAGAAAGATTGAGAAAGTTACTCTCTCAGTCATTATAGTGTATTATCTCTAATAATTAAGAACATTATGGTTGGTAAATAAAATGCGTAATGTTAGTCTATAAATTGTTAGATTTATGAGAAACGAAAATACACAGAAACATAATCAGAAAGTTCTATTGAGTGTTATTTTCCTAACTATCCGAGAAAGTCTGAGTATCTCATTGAGAAAGAGATACTAAGAGAGATGGCTAGTCTAGTAAAGAGTGTGTCTTTGCCTCAATTGACAAAGAATGTCAACTTTGACAATTGGAGTGTGCAGACGAGATTTCTTCTAAGAGTGTGGGATGTTGTTGCAAATGACTATGAATGTAGAATGTAGAACACAGAGTGGCCTAAGTTGCCACATTAAGAAAATCAGTGTTAAGGATCAATCAGTCTTGTACATATTGTATCGAGCTGTTGACGAATCTGGATTTGAGAAGATAGTAAATGCTAAATCTTCAAGAAAAGCATAACGAATTCTTGAGGAAGTTTACAAAGGTGATATCCGTGTAAAGCAAGTTAGACTTTAAATTCTTATAGACAAGTTTGAGAGTATGAGAATAGAGAGTAGAGAATGAGTGGCCAAGTATATATCTCGAATAGAGGCGGTAACGAATCAACTCAGAAGAAATGGAGAAGAGTTGCCTGTTAGTCGTACTGAGAAGAAGATCCTGAGGTCACTGACTAAAGACTTCAAAAATATTGTGTGCGCAGTTGAGAAGTCCAAAACTTGACTATGCTATTGGTTAAAGAGCTTCTTGGGTCTTTGGAGGCAAATGAGCAGTGAAGGAGAACGTTGTTTGAACCACTTGACCAAGTACTTTGATTTAAAGGAAGGTGCTTAGAACACTCGAGGTTGAAGTGATCCTGGAGGAAGAGGTTGTGGACAAGGAAGTCGTGGTCAAAGTGATAACGGAAGTGATTATGAATATGACAAAGAGCAAACCGATAAATAAAATTGACGTGACCGTGAAAAAAAGGCGAGATTGAGGAAGTCGATCAAGTAAATTTGATGTTGAATGTTTTAAGTGTGACAAACATGATCATTACGCGAATGAGTGCATATAACAAAATATTATCGGGATGAGAAAAAGGAAGAGACAAATATCCTTAATGTAAAAGCCGATGAAGAAATTAGAATTCTCTTAA


Gene Sequence:
>Vu_15981(+)
ATGACAAGAAGTCCGAACGCTAAACTGCCAAGCTCGGGTGCCAAGTTGTTGTGTAAGAACCCGGAAAGGGGAAACGAAAACTCGGACAGTCTGCAGAGGTATCATGACAACTCGGTGAAGGAACTTGGAGGAGTTAGTTTCACAGTGAGAGTAAAGGGGCTTTGAATGAGTCTTATGCTTTGGTTGGTTCTTTACCTTCGGATCCTATTCTTGGAATTGTTGAATGCGTTCAGCATATTTCAGTTCCAATTCTAAAAGAACATGCTGATAGGCTGGTGGAAAACCGGCCTTTGCTCGGGGAGATTCTGATGAAGAGGTTTAATGTGAACAATTGGAAAACCGGTCTTTACCTTTCGTCACCTATTTTCACTGTGTTCAGTATGAATCAGGTGCCACTAAAGTGTGTAAAACTCTCAATTTTCATTCTTTTTTGGTGAAAAATCTGGCTATGCTTCTTTTCCTGCAACTTAATTCGCATTTATTGTTACAAGCTTCCACTGTTCACCGAATCGGTTAAGAGAGAAATTGAGGCTTTATTAGCTTCCCGTGTTGACTACCTTTCCTTTTCATCCCTCTGATCCTTTGTTTTGACATCTTGTTTGTTTGAAATATTGCAGGTAAACGCAACAATGTACGTGTAGCAATAGGTAACTTTCATTTTGTACATACTTAAGTGCTTCCATTTTGTTTATAGAATTGTACTGATGTCTACTATTGGTACCGTTATCAGGCGCTACTGTAGGAGGAGTTGCAGCCCTTGTTGTCATTCTTGGATGTGTGTACTTTATTATACAAAGAAGAAGAAAAATTTATCAAAAATCAAGGAATATGGAGCTCTTCATAGCTCCAAACACTTTTGCATCAACTACTATCACGTCTCAAAGTCTATCTTCTTACCAATCTTCCAATCCAGTAACCAGGAGTTACTACTTTGGTGTCCAGGTCTTTACCTATGAGGAATTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTAAGGGAGGTTTTGGCACTGTTTACAAAGGTAACAAAATAACTTACATGTCCATGATGCACAGATACAATTCATCTGTCACATACCTTATGTTTCTGATACAATGATATAATTACTCTCAAGATGTATAGGATATGATACCTGGAATGATAACTGTTTTCCTTGAACAATCTTATATTTGTTAAACAGGTGAACTCAAAGATGGACGTACAGTTGCAGTGAAACGCCATAATGAAAGCAACTCTAGGCTTATTATGCAGTTCATGAATGAGGTTCAGATTCTAGCCCGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTCTCCTTGTCTATGAATTCATACCTAATGGAACAGTGGCTTATCATCTTCAAGGAAGAGGCTCAAAATCAACTTTACTCCCTTGGCCTATAAGATTGAACATTGCTGTTGAAACAGCTGAGGCTCTAGCCTACCTACATGCAAACGATGTCATACACCGCGATGTTAAAACCAACAACATTCTCTTGGATGATCAATTTTGCGTCAAGGTTGCTGATTTTGGTCTCTTGAGGGATTTCCCAACTTGTGTCACTCATGTGTCAACAGGTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATTACCAGTGCTACCAACTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTTATATCATCATTGCGAGCTGTGGACTTCAACAGGAATGGCAGTGATGTGAACTTGTCATACATGGCTTTAAGAAAAATTCAAAACCAGGAACTGCATGAATTGGTCGATCCTTATCTTGGGTTTGAGAAGGATCATGCTATGAGGATAATGACAACAGAAGTGTCAACATTGGCCTTTAGGTGTTTGCAACAAGAGAGAGATTTGAGACCATGTATGGATGAGGTGGTGGAGATCTTAAGAGGAATCAAGAGTGATGAGCTTGGTGCACGGGAAGAGACAGAAATATTGGATATTAGGACTGATGAAGCTATACTTTTGAAGAAGGCTCATTCTTCTGTATCTAATTCCTCATAG