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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15770 LG4 11558274 11559448 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 11558309 synonymous_variant p.Ser12Ser
G/C 11558344 missense_variant p.Cys24Ser
A/G 11558427 missense_variant p.Lys52Glu
A/G 11558436 missense_variant p.Lys55Glu
T/A 11558501 missense_variant p.Asn76Lys
G/A 11558505 missense_variant p.Glu78Lys
G/T 11558508 missense_variant p.Gly79Trp
G/A 11558541 missense_variant p.Glu90Lys
G/C 11558543 missense_variant p.Glu90Asp
A/T 11558656 missense_variant p.Tyr128Phe
G/A 11558690 stop_gained p.Trp139*
C/T 11558780 synonymous_variant p.Ile169Ile
T/C 11558788 missense_variant p.Leu172Pro
T/C 11558791 missense_variant p.Ile173Thr
T/C 11558804 synonymous_variant p.Asp177Asp
T/A 11558882 synonymous_variant p.Ile203Ile
G/A 11558905 splice_region_variant&intron_variant
T/C 11558936 upstream_gene_variant
A/G 11559032 stop_lost p.Ter211Trpext*?
C/A 11559034 missense_variant p.Pro212Thr
A/T 11559051 synonymous_variant p.Val217Val
G/C 11559053 missense_variant p.Arg218Pro
G/T 11559057 missense_variant p.Lys219Asn
G/T 11559059 missense_variant p.Gly220Val
C/T 11559140 missense_variant p.Ser247Phe
C/T 11559155 missense_variant p.Thr252Ile
T/C 11559358 synonymous_variant p.Leu320Leu
A/C 11559360 missense_variant p.Leu320Phe
A/G 11559401 stop_retained_variant p.Ter334Ter

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15770.1
MFLKCFGESSSSGRQYPTVIEELCRHFSLADIQKSTNNFDNNRLIARGGWVKVYKGCLQHIDGSDYAVAVRRFKGNYEGVESEIFKREVELLFQLHHPNCVSIVGFCNHKKEKTIVQEYMSNGSLDRYLGDEVREALPWKKRIEICIGAARGIHYLHAGLKRTIIHRNISPLIILLDENMHPKLSGFGLSLMGAHFKEQSKPIQSEIIGRPSHLPLEYVRDGTVTHKCDVYAFGVVLLQVVRGTKKFPMSQELMGKSIEENIDLKIKGKIAPECWQVFIDIALKCIEDEPDERPEMGEVEVELELALLLQEQADVTNINSYYTLSSKTIINPKSKWRWGFDDVATKLLK*


CDS Sequence:
>Vu_15770.1
ATGTTTCTGAAATGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCAGAAATCAACCAACAATTTTGATAATAACAGACTAATTGCACGAGGAGGATGGGTTAAAGTATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACGCAGTCGCAGTGAGGCGATTTAAGGGGAATTATGAAGGGGTAGAAAGTGAAATATTCAAAAGAGAAGTAGAGTTACTGTTTCAGCTTCATCACCCAAATTGTGTGTCTATTGTAGGATTTTGCAACCACAAAAAAGAGAAGACCATTGTGCAAGAATACATGTCCAATGGATCTCTAGATCGATACCTGGGAGATGAGGTTAGGGAAGCACTGCCATGGAAAAAAAGGATAGAGATTTGCATAGGAGCAGCGCGTGGAATACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAACATCAGTCCTCTCATCATTCTTTTGGATGAGAACATGCACCCAAAACTCTCAGGTTTCGGCCTTAGTTTAATGGGAGCACATTTCAAAGAACAGTCAAAACCAATTCAATCGGAAATTATAGGTCGTCCTAGCCACTTACCTCTGGAGTACGTAAGGGACGGTACTGTCACACATAAATGTGATGTTTACGCATTTGGTGTTGTTCTGCTACAAGTTGTAAGGGGAACAAAAAAATTTCCAATGTCACAAGAACTTATGGGGAAGTCTATTGAGGAGAATATTGATCTGAAAATCAAAGGAAAGATTGCACCGGAGTGTTGGCAAGTGTTTATAGACATAGCCTTGAAATGCATAGAGGATGAACCTGACGAACGACCTGAAATGGGTGAAGTGGAGGTAGAACTTGAGCTTGCTCTGTTGTTGCAAGAACAAGCAGATGTCACAAACATCAATAGTTATTATACCTTATCGTCCAAAACCATTATTAACCCAAAATCTAAGTGGAGGTGGGGATTTGACGATGTGGCTACTAAGCTTTTGAAGTAG


Promoter Sequence:
>Vu_15770::LG4:11556274-11558274(+)
GTTCTCAGAATTTTTGTGAATGAGATTTTAAATGAAGTTGTCATTGTAATCGTTTTTGGCTAGTACAAATTTGAAGGCAGTGAAAATTGCAGCGTAGTGTTGGCAAGTCTTTGTAGATATATATCACATTAGATGTAGGATGAACAACCAACATTGGAAGTTGAGCATGCTCTGTATGATAAAACCAGCTACATCTTAGGACCAAATTGTTAGAAAATGACACTCGTTTAGATATTTCTAAATATGTTTATGGTGGGTTTCATTTCTCATAAGCCTTACAATTCATAAGATTAACATTAGGTCTTTCATCTACAGATCATAATGCTCCCAATTATTACAAATAATACATTATAATAATTGTAAAACATAACAGAGGAACTTCCTAGTTCTTCCTCTCCCATGCAATAAACACTACACTCTTAATAATTATTTGATAATTCTTAAATTTAAGTTTATTCCTACAAAACTCCCCCATAAACTTAAATTTTGTCTTCTTTCATCCAAACTTTTTCATGTTCTTTAACCCACACCGAACTTGTTCCTTTCAGTAATACCTAGATCTTTTTCTCCTCCCTCATATTCCTTTTGTGAAAGTATAGTTGGGAGGTTTTCAATCTCTATCTCAAAGATAACTTTATCAGAAAATTTTGATTCCTCTGAGTGAATTTGAATATGTTTTTCTGCTCCAAGTCTTCAATAGGCTTTTGCAAAATAAACATATCAACTTGAACATTCACAACTTTATTAAGTTCTTCAAATTCTATCTTACCTAGATGACATTCTTCCTTAGTTGCAATTACATTATCAACAATTTGGTTCTCACTCGACATTTGTCCTTTTTCAATCTCCTTCTTCTCCTTGGTCAAGGAATTGATCTCTCCCGTCATCTCCTCCTTTTGCATCTTCCAAGACTCGTTAACTCGTGTCAACTCCTCTTTGAAATTGATTTTGGAGAAAACCATAAAACATTCTTTCTTTCTCAAATTGCTCTCCACGTTACCATTTTAGCTTTTTAAAATTTATTTGAAATGCACCAATCAAATGTTGACACCTGACTGTTGTTAAAAAGTTGTGGCCATTGTTAAAGAAACATTTTTCAAAAATATTTTATATTATATGTAAAAAACATTAATTATAGGAATCAAGCTTAAATAGATTAAGATATATGATATCTTTACCTGACAAAATTTTCCATTAATGTTTTTCTTTTCTCCTAGACCTTACTAAGTGTAACTCAAACAATACAGTAAAAAGAAAAAACAACCAAATTGTAACATTGTTTCTCCCTTCCTATTACAATAAAATTTTTGTTGATGACTTTTATTAGATTTGTCTGTAAAGTTAATATTCAAGTCTGATATTAATTCAGATATGGAACAGATGAAGGAGAGATTTGTCAAATTGTTGTTGGGTGTGGGCATGTAAAGGGAGTTATGTAAAAAATGTTAGGGATTTTTTTTTCTAGCATTCTTTCTATACCTATTGACTTGTAATGAACAAATTTGCAATATAACATTCCTTCTTCTTTTTCTGAGAGCTTCTTATTATGTTCTAATAATTATTATCTCCTAAAACTACAGCTTCGATTTTTGGTGAACAAAAATGCCTAGAATCACTTGACAACAATTGTTTGTCCATTGGAAAGCTGATCCTAAAAATATATCATTCAAGGATAGTAAATATATGTGAAACAAGTTTAATGATGTATCATATTTTGTTGAAGGTTTTAACTGAATGAAATTATGGTCTTACTTGTAGACAATTCCAAACCTACCGCTCACCCAAAAACACCTTATCTTGACGATCCCCTGACCCACCTCCTTGAGTGGTTGAAGAAGAAAAGCTGTCCATATTCATTATATCTGATGTTGATCAATAAATTAAATTATTGATCCAAATTAATACGAATACAGTGTCTAAAAAGAAGCTTTAAAATATAACCATGGGTGTATGTACTACATAGACACTCAGTTCAATCTCAGTGGCAAGAAACGTAATAA


Gene Sequence:
>Vu_15770(+)
ATGTTTCTGAAATGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCAGAAATCAACCAACAATTTTGATAATAACAGACTAATTGCACGAGGAGGATGGGTTAAAGTATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACGCAGTCGCAGTGAGGCGATTTAAGGGGAATTATGAAGGGGTAGAAAGTGAAATATTCAAAAGAGAAGTAGAGTTACTGTTTCAGCTTCATCACCCAAATTGTGTGTCTATTGTAGGATTTTGCAACCACAAAAAAGAGAAGACCATTGTGCAAGAATACATGTCCAATGGATCTCTAGATCGATACCTGGGAGATGAGGTTAGGGAAGCACTGCCATGGAAAAAAAGGATAGAGATTTGCATAGGAGCAGCGCGTGGAATACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAACATCAGTCCTCTCATCATTCTTTTGGATGAGAACATGCACCCAAAACTCTCAGGTTTCGGCCTTAGTTTAATGGGAGCACATTTCAAAGAACAGTCAAAACCAATTCAATCGGAAATTATAGGTAATTGTTCTATAAGTATCTTATAATTATATACTGCTACAGAATAATTACCGGTTTTATTGAGCTTACTGCAACAAATTTTTGTCAATTAAATTGAACAAGGCTGATGATACTTTCACATTTAGGTCGTCCTAGCCACTTACCTCTGGAGTACGTAAGGGACGGTACTGTCACACATAAATGTGATGTTTACGCATTTGGTGTTGTTCTGCTACAAGTTGTAAGGGGAACAAAAAAATTTCCAATGTCACAAGAACTTATGGGGAAGTCTATTGAGGAGAATATTGATCTGAAAATCAAAGGAAAGATTGCACCGGAGTGTTGGCAAGTGTTTATAGACATAGCCTTGAAATGCATAGAGGATGAACCTGACGAACGACCTGAAATGGGTGAAGTGGAGGTAGAACTTGAGCTTGCTCTGTTGTTGCAAGAACAAGCAGATGTCACAAACATCAATAGTTATTATACCTTATCGTCCAAAACCATTATTAACCCAAAATCTAAGTGGAGGTGGGGATTTGACGATGTGGCTACTAAGCTTTTGAAGTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
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