Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15762 LG4 11488890 11489830 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, sequence-specific DNA binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 11488916 synonymous_variant p.Ala9Ala
G/C 11488918 missense_variant p.Arg10Thr
T/A 11488943 synonymous_variant p.Pro18Pro
A/G 11489060 intron_variant
A/T 11489082 intron_variant
C/G 11489093 intron_variant
G/T 11489163 missense_variant p.Gly59Val
T/G 11489168 missense_variant p.Leu61Val
G/C 11489177 missense_variant p.Ala64Pro
C/G 11489210 missense_variant p.Arg75Gly
G/A 11489262 splice_region_variant&intron_variant
C/A 11489265 intron_variant
C/A 11489297 intron_variant
G/T 11489431 missense_variant p.Arg117Ile
A/G 11489522 synonymous_variant p.Thr147Thr
A/C 11489544 missense_variant p.Asn155His
C/A 11489705 missense_variant p.Asn208Lys
C/A 11489735 synonymous_variant p.Thr218Thr
G/A 11489737 missense_variant p.Ser219Asn
G/A 11489759 synonymous_variant p.Gln226Gln
C/T 11489778 synonymous_variant p.Leu233Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15762.1
MVAMMGCLAREKGWKKGPWTGEEDKLLSEYVSLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPFEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKLQRRQKEQQQQQPEKCDFKSIMCHKDTMNGTKSFETQNSKIQEIGLMNPTIDNQYNNTVPSMHEGFSSTWPEDDGLWFGLWDFDEPLMSFADYVNQFSKCVMPDEGIFSAGEDSTQSHVCFDDIFG*


CDS Sequence:
>Vu_15762.1
ATGGTAGCTATGATGGGTTGCCTGGCTAGAGAAAAAGGGTGGAAGAAAGGCCCTTGGACTGGTGAAGAAGACAAGTTGCTAAGTGAATATGTTAGCTTGTATGGGGAAGGAAGGTGGAGTTCAGTGGCAAAGTTTACAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAGCCTGGTCTGAAGAAAGGTCAATTAACACCTTTCGAGGAAGGAACCATTATGGAACTACATGCAATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTCGGGAAGAGGGAGAAATCCAAACACAAGAAGCTACAAAGGCGACAGAAGGAACAACAACAACAACAACCTGAGAAGTGTGATTTCAAAAGCATCATGTGCCACAAGGATACCATGAACGGAACAAAATCGTTTGAGACACAAAATAGTAAGATACAAGAAATTGGATTGATGAACCCAACAATAGATAACCAATACAATAATACCGTTCCTTCCATGCACGAGGGTTTCTCATCCACGTGGCCGGAGGATGATGGCTTATGGTTTGGTTTATGGGACTTTGATGAACCACTGATGAGTTTTGCAGATTATGTTAACCAGTTTAGCAAATGTGTCATGCCAGATGAAGGCATATTTTCTGCTGGAGAGGATTCCACGCAAAGTCATGTTTGTTTTGATGATATATTTGGATGA


Promoter Sequence:
>Vu_15762::LG4:11486890-11488890(+)
TTCGCAATTGTGGTTCCCTCTTTGCAGGTTGATGAAAGCACGAGGGAGATGGTGGTTTTGCCTTGGCTATTGGCAATGCGATTTTATGTTAGGTTTCTCTACGTCTGATTTGCAGGTGGTGATGGATGAAGCTTCGTGATGGCACGTCAATGGAGGAAGCTTTGCGTTTATGGGTTGGCTATGGAGGAGATCACGATGCGATTTGGGGTTGGTTTCTAGTGGCTGATTGTAAGCGTGGGCGACGCGATTTGGGTTTGCTGGACGACGGTGACAGTTAGGCTGTGGCGGCGAGATGCTGATGTTGTGGCGCTATGTTGGTGTTAGGTGGTTGAGACATTGTGGTGGCTGGTTCTGCGTCGGGGATTGGGCAGTTTGGGTGGTGCAACGACGAGGTTGGCGGTGGCTTGGGGTTACTCATGGTGCTAGTTGGTCAATCCATGGAGTTCAAAATTTAAAATAATTAAATTCCACATAACTTTGCCACGTCATTAAAAATTGCACAGTTAGCAAGCCAAGACACACAAATTTTAACGTCGTCCACTGAATTTAACGGCAAAATCAAAATTGATTCAATTTTATAGAGAAATGGACCTAATTGGGATCAAACAAAATACGATGACCTATTTGAGATAATTCTACACAAATAGGTAGTTAGTGTTATTAGTATTAGCCAAAACTGACACAAATCAAACTAATATTAAATATAAATTTTATTTAGTGTTAATTATTTTTAGAAAAATATATTGTCATCAAAATTATTTTAATTAAAAAATCAATTTAAAACTTATTGACGTTATTTTCAAAATTATAAATTTAAAATTAATTTTAAAAATTTGATCAAAATTAATTTACAATTAAATTGATTAAAAATATTTTTAAATTTTTTTATATAATTTCACAGAAAGATAAATGTCTTTTTTTTCTTCTTTAGCACCGAGTATAGATCCTGAACCCCTGTACATAAGGGTGGGCATACCATCCTACAGAATAAAAAATCACTAAATAAACTCGACCAAACATTTGTATGGTTAAAACGTTGAAGTCAGATTGCATCAACATTCCAAATTAGATTTTGTGAAGAAGATCGTAATCTTTTCTTTCATAACACGTGCACGTAAACGCCACTGTTATGGTGTAGTTTAAAAGTGGTAAAATTCTTAAGCAAACAAGATTCATTAATCTTTCCATTATCTTTTCAGCACTATCAAATCTAAGAAACTTTAGAAGATCTTGAAATTTCCTTCAGTCTTTTCGCCAACACCTTTACATTTTTCAATTGTTTCAGTTGCTATCAATACCTATTTACGCGCAAAACTCCTTTCATTATCATATGGATTAAGGAACTAAACAAATATGCTACTAAATACAGTAGTCAGCCCACGTGTTGCCTAACTGACTTGCCCTTTCACAAACTTATGTTCCCCATTATACCTTAATTGGAATCCTATGCTCAAAATTTTGGTTAGTTTCATTGAACAACTTTAAAGCACACAACAACAAGGTTGCTAAAAACAACCAAAACAAAACAAAATAAAGCATGTCTTCAAAATAAATAATCAATCTACATGTAATCTATATCCTTAAATAAGGATTAACAGGTAATCAATCATACACCTGTTAGAGTAGCATTGCATCAAAAGCCACTTTCAAGGGAACACGACGCACTCCAGTTTGTTTTTATTTCATTTGTTTTGTCTTGATTAAAGATTATGTTGTGCATATGATGAATTCTACTTTAGCTAGCTGGAACACTTGTACTTGATTATTATATATATTCTGTGCTTAAGATTTCATTGATCCACTTGCCCCATTCTCACTGGGAAGGTATGAACCTGTGAACAACCATGTTTAAGACTCAAAAGCTGACATCACAATAGGAAAAATCAATTCCAAAGTTCTCAATGATAATTATTAAGATGGCCCGCTACGATATGGTATAAAAGTGAAGCATATATCAGTAATAGAAATCGCAGATGTATACGTAGGATCGTGTGAAATAA


Gene Sequence:
>Vu_15762(+)
ATGGTAGCTATGATGGGTTGCCTGGCTAGAGAAAAAGGGTGGAAGAAAGGCCCTTGGACTGGTGAAGAAGACAAGTTGCTAAGTGAATATGTTAGCTTGTATGGGGAAGGAAGGTGGAGTTCAGTGGCAAAGTTTACAGGTATAATTAACTATTACACTTTCATTTATATATCATTACTTGCACCACGTTCTACCTTTTTTCACCTGATTCATTTATAACTTAATTGAATTTTAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAGCCTGGTCTGAAGAAAGGTCAATTAACACCTTTCGAGGAAGGAACCATTATGGAACTACATGCAATTTTGGGTAACAAGTAATTAGAACACCATATATATATATATATTCTCCTTTTTCTCAAATACTCAAACTCGTTATTATTTTAATGGGAATTTCAAAATAACACAGGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTCGGGAAGAGGGAGAAATCCAAACACAAGAAGCTACAAAGGCGACAGAAGGAACAACAACAACAACAACCTGAGAAGTGTGATTTCAAAAGCATCATGTGCCACAAGGATACCATGAACGGAACAAAATCGTTTGAGACACAAAATAGTAAGATACAAGAAATTGGATTGATGAACCCAACAATAGATAACCAATACAATAATACCGTTCCTTCCATGCACGAGGGTTTCTCATCCACGTGGCCGGAGGATGATGGCTTATGGTTTGGTTTATGGGACTTTGATGAACCACTGATGAGTTTTGCAGATTATGTTAACCAGTTTAGCAAATGTGTCATGCCAGATGAAGGCATATTTTCTGCTGGAGAGGATTCCACGCAAAGTCATGTTTGTTTTGATGATATATTTGGATGA