Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15737	LG4	11296936	11299374	PREDICTED: receptor-like protein kinase FERONIA	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/G	11296943	missense_variant	p.Pro3Arg
T/C	11296962	synonymous_variant	p.Ala9Ala
T/G	11296963	missense_variant	p.Phe10Val
T/A	11296965	missense_variant	p.Phe10Leu
C/G	11296970	missense_variant	p.Thr12Ser
T/G,C	11296973	missense_variant	p.Ile13Thr
T/C	11296974	synonymous_variant	p.Ile13Ile
T/C	11296978	missense_variant	p.Phe15Leu
A/T	11296985	missense_variant	p.Tyr17Phe
C/T	11296987	missense_variant	p.Leu18Phe
G/C	11296995	missense_variant	p.Trp20Cys
C/T	11297001	synonymous_variant	p.Leu22Leu
A/G	11297016	synonymous_variant	p.Thr27Thr
T/C	11297028	synonymous_variant	p.Ile31Ile
G/A	11297033	missense_variant	p.Arg33His
C/G	11297043	missense_variant	p.Asp36Glu
T/C	11297044	missense_variant	p.Phe37Leu
C/A	11297046	missense_variant	p.Phe37Leu
T/C	11297049	synonymous_variant	p.Phe38Phe
A/G	11297053	missense_variant	p.Ile40Val
T/C	11297058	synonymous_variant	p.Ser41Ser
G/C	11297070	synonymous_variant	p.Ser45Ser
A/G	11297074	missense_variant	p.Asn47Asp
C/T	11297082	synonymous_variant	p.Ser49Ser
C/T,A	11297088	synonymous_variant	p.Pro51Pro
T/A	11297123	missense_variant	p.Leu63His
C/A	11297128	missense_variant	p.Pro65Thr
C/T	11297129	missense_variant	p.Pro65Leu
C/T	11297132	missense_variant	p.Thr66Ile
C/T	11297137	missense_variant	p.Pro68Ser
C/A	11297160	synonymous_variant	p.Leu75Leu
C/T	11297217	synonymous_variant	p.Phe94Phe
A/T	11297218	missense_variant	p.Asn95Tyr
T/A	11297272	missense_variant	p.Ser113Thr
C/A	11297284	missense_variant	p.His117Asn
T/A	11297286	missense_variant	p.His117Gln
T/C	11297300	missense_variant	p.Phe122Ser
A/T	11297303	missense_variant	p.Gln123Leu
G/T	11297305	missense_variant	p.Ala124Ser
G/C,A	11297321	missense_variant	p.Arg129Lys
C/T	11297331	synonymous_variant	p.Pro132Pro
C/T	11297338	missense_variant	p.Leu135Phe
C/T	11297340	synonymous_variant	p.Leu135Leu
T/A	11297343	synonymous_variant	p.Leu136Leu
T/A	11297358	synonymous_variant	p.Ala141Ala
C/A	11297360	missense_variant	p.Ser142Tyr
C/A	11297361	synonymous_variant	p.Ser142Ser
T/C	11297373	synonymous_variant	p.Asp146Asp
A/C	11297376	synonymous_variant	p.Ala147Ala
T/C	11297395	missense_variant	p.Ser154Pro
C/T	11297400	synonymous_variant	p.Asp155Asp
C/A	11297403	synonymous_variant	p.Ile156Ile
G/A	11297411	missense_variant	p.Arg159Lys
A/G	11297452	missense_variant	p.Ile173Val
A/T	11297470	missense_variant	p.Thr179Ser
C/T	11297474	missense_variant	p.Thr180Ile
A/C	11297481	synonymous_variant	p.Ser182Ser
C/G	11297514	synonymous_variant	p.Ser193Ser
C/G,*	11297573	missense_variant	p.Ala213Gly
A/C,*	11297576	missense_variant	p.Lys214Thr
T/*,C	11297583	synonymous_variant	p.Thr216Thr
A/G,*	11297586	synonymous_variant	p.Pro217Pro
A/G	11297593	missense_variant	p.Thr220Ala
C/T	11297594	missense_variant	p.Thr220Ile
C/A	11297599	missense_variant	p.His222Asn
A/G	11297604	synonymous_variant	p.Lys223Lys
T/A	11297624	missense_variant	p.Phe230Tyr
C/A	11297642	missense_variant	p.Ala236Asp
G/C	11297650	missense_variant	p.Ala239Pro
C/G,A	11297659	missense_variant	p.Arg242Gly
C/G	11297681	missense_variant	p.Thr249Arg
A/T	11297686	stop_gained	p.Lys251*
A/G,T	11297687	missense_variant	p.Lys251Arg
G/A	11297704	missense_variant	p.Val257Ile
C/A	11297713	missense_variant	p.Gln260Lys
A/G	11297714	missense_variant	p.Gln260Arg
T/G,C	11297719	missense_variant	p.Tyr262His
A/T,C	11297720	missense_variant	p.Tyr262Ser
C/G,*	11297722	missense_variant	p.Gln263Glu
A/G,*	11297724	synonymous_variant	p.Gln263Gln
C/A,T	11297725	missense_variant	p.Pro264Thr
T/G	11297729	missense_variant	p.Val265Gly
A/G	11297731	missense_variant	p.Asn266Asp
C/T	11297733	synonymous_variant	p.Asn266Asn
A/G	11297738	missense_variant	p.Glu268Gly
G/A,*	11297750	missense_variant	p.Arg272Lys
G/C	11297751	missense_variant	p.Arg272Ser
G/T	11297757	synonymous_variant	p.Thr274Thr
T/A	11297762	missense_variant	p.Ile276Asn
C/A	11297769	synonymous_variant	p.Thr278Thr
A/G	11297774	missense_variant	p.Asn280Ser
C/T	11297790	synonymous_variant	p.Asp285Asp
G/A	11297813	missense_variant	p.Ser293Asn
T/C	11297814	synonymous_variant	p.Ser293Ser
A/T	11297820	synonymous_variant	p.Gly295Gly
T/C	11297822	missense_variant	p.Leu296Pro
A/G	11297824	missense_variant	p.Asn297Asp
C/G	11297828	missense_variant	p.Ala298Gly
A/G	11297833	missense_variant	p.Ile300Val
C/T	11297838	synonymous_variant	p.Asn301Asn
G/A	11297862	synonymous_variant	p.Gln309Gln
T/C	11297868	synonymous_variant	p.Pro311Pro
C/T	11297885	missense_variant	p.Thr317Ile
A/C	11297893	missense_variant	p.Ile320Leu
T/A	11297899	missense_variant	p.Leu322Ile
T/G	11297922	synonymous_variant	p.Pro329Pro
A/T	11297923	missense_variant	p.Arg330Trp
T/C	11297928	synonymous_variant	p.Val331Val
A/G	11297930	missense_variant	p.Asn332Ser
C/T	11297931	synonymous_variant	p.Asn332Asn
A/G	11297933	missense_variant	p.Asn333Ser
C/A	11297934	missense_variant	p.Asn333Lys
A/T	11297935	missense_variant	p.Thr334Ser
T/C	11297944	synonymous_variant	p.Leu337Leu
G/C	11297946	missense_variant	p.Leu337Phe
A/T	11297954	missense_variant	p.Lys340Ile
A/C	11297955	missense_variant	p.Lys340Asn
C/G	11297961	missense_variant	p.Ile342Met
A/T	11297964	synonymous_variant	p.Ile343Ile
G/A	11297967	synonymous_variant	p.Ala344Ala
T/C	11297970	synonymous_variant	p.Asp345Asp
A/T	11297979	synonymous_variant	p.Ala348Ala
C/G	11297981	missense_variant	p.Thr349Ser
A/G	11297989	missense_variant	p.Thr352Ala
A/T	11297991	synonymous_variant	p.Thr352Thr
G/A	11297995	missense_variant	p.Val354Ile
T/A	11298015	missense_variant	p.Asn360Lys
A/G	11298017	missense_variant	p.Gln361Arg
G/A	11298020	missense_variant	p.Arg362Lys
A/C	11298027	synonymous_variant	p.Val364Val
G/A	11298030	synonymous_variant	p.Pro365Pro
A/G	11298038	missense_variant	p.Lys368Arg
G/A	11298040	missense_variant	p.Asp369Asn
C/G	11298065	missense_variant	p.Pro377Arg
C/A	11298073	missense_variant	p.Gln380Lys
G/A	11298075	synonymous_variant	p.Gln380Gln
A/T	11298079	stop_gained	p.Lys382*
A/G	11298080	missense_variant	p.Lys382Arg
T/A	11298085	missense_variant	p.Tyr384Asn
A/G	11298102	synonymous_variant	p.Leu389Leu
C/A	11298111	missense_variant	p.His392Gln
A/G	11298115	missense_variant	p.Lys394Glu
A/C	11298117	missense_variant	p.Lys394Asn
T/A	11298121	missense_variant	p.Leu396Met
A/G	11298129	synonymous_variant	p.Lys398Lys
A/G	11298131	missense_variant	p.Asp399Gly
C/T	11298134	missense_variant	p.Ala400Val
A/G	11298153	synonymous_variant	p.Glu406Glu
A/C	11298165	synonymous_variant	p.Ile410Ile
G/A	11298167	missense_variant	p.Ser411Asn
C/T	11298171	synonymous_variant	p.Asp412Asp
C/A	11298172	missense_variant	p.Pro413Thr
A/G	11298175	missense_variant	p.Thr414Ala
C/A	11298176	missense_variant	p.Thr414Lys
G/A	11298179	missense_variant	p.Gly415Asp
T/C	11298183	synonymous_variant	p.Asn416Asn
C/T	11298186	synonymous_variant	p.Leu417Leu
C/T	11298188	missense_variant	p.Ala418Val
C/A	11298224	missense_variant	p.Thr430Asn
G/C	11298271	missense_variant	p.Val446Leu
G/T	11298393	synonymous_variant	p.Pro486Pro
T/C	11298486	synonymous_variant	p.Gly517Gly
A/C	11298505	missense_variant	p.Ile524Leu
T/C	11298582	synonymous_variant	p.Asn549Asn
T/C	11298600	synonymous_variant	p.Ser555Ser
T/G	11298606	synonymous_variant	p.Leu557Leu
G/A	11298764	missense_variant	p.Gly610Asp
C/A	11298772	synonymous_variant	p.Arg613Arg
G/T	11298796	missense_variant	p.Gly621Cys
G/A	11298802	missense_variant	p.Glu623Lys
G/C	11298836	missense_variant	p.Ser634Thr
C/A	11298837	missense_variant	p.Ser634Arg
G/C	11298867	synonymous_variant	p.Ala644Ala
T/C	11298879	synonymous_variant	p.Asp648Asp
C/T	11298882	synonymous_variant	p.Phe649Phe
A/T	11298885	synonymous_variant	p.Gly650Gly
C/A	11298892	synonymous_variant	p.Arg653Arg
G/A	11298903	synonymous_variant	p.Gly656Gly
T/A	11298913	missense_variant	p.Ser660Thr
C/T	11298914	missense_variant	p.Ser660Phe
T/C	11298926	missense_variant	p.Leu664Pro
G/T	11299110	missense_variant	p.Trp725Cys
T/G	11299193	missense_variant	p.Leu753Arg
G/A	11299236	synonymous_variant	p.Gly767Gly
C/A	11299251	synonymous_variant	p.Ser772Ser
A/T	11299252	missense_variant	p.Met773Leu
G/A	11299278	synonymous_variant	p.Glu781Glu
C/A	11299356	synonymous_variant	p.Pro807Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15737.1

MDPTCTRTAFRTILFLYLMWCLSFLSTADDIYRPTDFFSISCGSSTNFSTPDTRNWTSDNHFLSPTNPSVAAPSLTPSTIQGPYTHARLSYSSFNYSFPVTPGPKFIRLFFYSTSYHNFPRFQASFSVRAGPYTLLQDFNASLNADADDDPSHSDILFREYCVYFGDGENLTITFFPSTTDSYAFINGIEIVSMPPYLYYTDPHSTEQPQYVAKMTPYVTEHKFALETMFRLVVSAEIASSRDTGMLRTWKPDIKYVTTQYYQPVNYEKIKRLTFITTYNYTAPDQVYRTVRSMGLNASINMGFNLTWQLPVDSGFTYMIRLHFCQLDPRVNNTGDLIFKIIIADQLATNWTDVLMWTDNQRGVPVVKDYVVSILAPDNQKKAYLSVKLHPHDKSLIKDAQLNAIELFKISDPTGNLAGPNPDLPPLSKTKKSRTPAAVAGAVSGVLLFSFIVAFFLIKRRKNVVDNKGPNKKEGTSRSSGSLLIPTALCRQFSMAEMKVATNNFDKVFEVGVGGFGNVYKGHIDKGSTTVAVKRLKPGSRQGIREFKNEIQMLSQLCHPNIVSLIGYCYENNEMILVYDFMNHGNLSDHLYDTDNPSLSWKRRLQICIGVARGLHYLHTGVEQVIIHRDVKSSNILLDEKWVAKVSDFGLSRIGGPSGSSMSLVSVNTEVKGSIGYLDPEYYKRYLLTEKSDVYSLGVMLLEVLSGRKPLLPGEEKQRISLVNWAKHCYEKGTPNEIVDTELKDQVAPQSLLKFIEVAFTCLLEDGTQRPSMNDVVELLEFALQLQDGVVNGALQSSLNYEDCNTPKNSII*

CDS Sequence:
>Vu_15737.1

ATGGACCCAACTTGCACACGAACTGCTTTTAGAACCATTCTCTTCCTCTACCTTATGTGGTGCCTCTCTTTCCTTTCCACAGCAGACGATATTTATCGTCCCACTGACTTCTTTAGCATCAGTTGTGGCTCATCGACCAACTTCTCCACTCCCGACACTCGGAATTGGACTTCAGACAATCACTTCCTCTCTCCAACAAACCCCTCAGTCGCTGCTCCTTCACTCACACCATCTACCATACAGGGTCCCTACACCCATGCTCGTCTCTCTTACTCCTCATTCAATTACTCCTTCCCTGTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCATAACTTCCCTCGCTTCCAAGCCTCTTTCTCAGTCAGAGCAGGCCCCTACACCCTCCTTCAAGATTTCAATGCTTCCCTCAACGCCGATGCAGATGATGACCCTAGCCACTCTGACATCTTGTTCAGAGAGTATTGCGTTTACTTTGGAGACGGTGAGAACCTGACTATAACCTTCTTTCCCAGTACTACTGATTCATACGCTTTCATCAACGGGATCGAGATTGTTTCCATGCCCCCTTATCTCTACTACACCGATCCTCACTCCACAGAGCAGCCGCAATATGTTGCCAAAATGACTCCATATGTCACTGAGCACAAATTTGCTCTCGAGACCATGTTCAGGTTAGTCGTTTCCGCTGAAATTGCTTCCTCACGGGACACGGGTATGCTCAGAACGTGGAAACCTGACATCAAGTACGTAACTACTCAATATTATCAACCAGTTAACTATGAGAAAATTAAAAGGCTGACGTTCATTACAACCTATAACTACACGGCACCAGACCAAGTGTACAGAACCGTTCGGAGTATGGGACTTAATGCCTCTATCAACATGGGTTTCAATCTCACATGGCAGCTTCCTGTTGATTCTGGCTTCACCTACATGATACGGTTACACTTTTGCCAGCTTGATCCTAGGGTTAACAACACTGGTGACTTGATTTTCAAAATCATCATAGCGGATCAGTTGGCAACCAACTGGACAGACGTTCTCATGTGGACTGATAATCAGAGGGGTGTACCGGTGGTTAAAGACTACGTAGTTTCCATCTTAGCCCCAGATAATCAGAAAAAGGCATATCTTTCTGTGAAATTACACCCTCACGATAAAAGCTTGATCAAAGACGCACAACTAAACGCAATTGAACTCTTCAAAATAAGCGACCCAACAGGTAATCTCGCTGGGCCGAACCCAGACCTGCCTCCATTATCAAAAACTAAAAAGAGCAGAACCCCTGCCGCCGTTGCAGGGGCAGTTTCGGGTGTCCTTTTGTTCTCCTTTATTGTCGCCTTTTTCCTCATCAAACGCCGGAAGAATGTCGTTGACAACAAGGGTCCCAATAAAAAGGAAGGAACTTCTCGGAGCAGCGGCTCATTACTGATACCGACCGCCCTCTGCCGACAGTTCTCAATGGCCGAAATGAAAGTCGCAACCAACAACTTCGACAAAGTCTTCGAGGTTGGCGTCGGAGGCTTCGGTAACGTGTACAAAGGTCACATCGACAAAGGCTCAACTACTGTCGCAGTCAAAAGGCTTAAACCGGGTTCTCGCCAAGGTATTCGCGAGTTCAAGAATGAGATCCAAATGCTGTCTCAACTTTGTCACCCCAATATCGTTTCCCTCATTGGTTACTGCTACGAGAACAACGAGATGATCCTCGTTTACGATTTCATGAATCACGGCAACCTCAGTGACCATCTCTACGACACTGATAACCCGTCTTTGTCGTGGAAACGTAGGCTCCAGATATGCATAGGTGTTGCACGAGGATTGCATTATCTGCATACAGGTGTGGAGCAGGTGATCATTCACCGTGACGTGAAGAGCAGCAATATCTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCAGATTTCGGATTATCCCGAATTGGGGGGCCCAGTGGTTCTTCGATGAGTCTCGTGAGCGTGAACACTGAGGTGAAAGGTAGTATTGGATATTTGGACCCAGAATATTACAAGCGATACCTTTTGACGGAGAAGTCTGACGTGTACTCACTTGGAGTGATGTTGTTGGAGGTGTTATCTGGGAGGAAGCCTTTGCTCCCTGGGGAGGAAAAGCAACGAATTTCACTTGTTAATTGGGCGAAACATTGCTATGAGAAGGGAACTCCGAATGAGATTGTGGATACAGAACTCAAGGACCAGGTAGCACCTCAGTCTCTGCTCAAATTTATTGAGGTTGCATTCACCTGTTTGCTTGAAGACGGGACTCAACGACCTTCCATGAACGATGTCGTTGAGCTGTTGGAGTTTGCTCTTCAGCTTCAGGATGGTGTTGTTAATGGTGCGTTGCAGAGTTCTCTTAATTATGAAGATTGTAACACCCCCAAAAACAGCATTATTTAG

Promoter Sequence:
>Vu_15737::LG4:11294936-11296936(+)

AGTCAAAAAGTCAATGAACAAGTCATGCAATTATATATTTATTAAGCAGATGAAAATTTCCGGCGAGAAATCAAAGTTTGCTAACAATATGTGTAACTTTCTATCCTTCTGGCTTTGATAGAAGATGACAAAATGTTGAAGTTGAAAGAAAAGACGTATATATGGAAAAATCCCATCGCGTCCAAATAAATGTTTCTAATAGTTTTACCAAGTCTTAGCCTTTGTTCTTTGGACGGTTCAATATTTATTGTCCTTTATTTTTCTCATAAAAAAACAAATTTATGTTAGTTTAAATTTCTAGTTATTAAATTAAGTTAGTGTTGTTACTAGGAATTCAACTTTTTTTTTTTAAGTGGAACATTATTAATATGCAAGACAAGTTGTGGAAAATAAGGAAGGAAATAATTTTCTATTAACTAAAATAGGGAAGAAAAATAAGTTTAATTTTAACAACTAAAATAATATTTAAGTAACTATACAAAGAAAAGTAAATACTATTGAAAAAATCACTTTTTATACGTTTCAATCAAATTGAATAAATAAAAACTAATTCATTTTAATAAGTTAAATAAATGTGAACTATTTATGTAAAGTAAATAGAGTGTATATAATTTGTAAGGATCTAAAATTTAATTTGTAGTAATAAGTGATTATTTTATTAATAAAAGTTAAATTATAAATAAGATTTTGTATTAATAAAGTTTTATTTTATAAAAATTATTATTTCTTTATATATTTTTTTTAAATTTCTTTGCCTACTCTCTAATATGTGGTTTTATTTTTTATTTATTTTAAGATTAGAGATATCGGAAGGATTTTTATAAACAAACTAACTAATCTAATCAATTAAAATTAAAAATAGAGTAAGTTTACTTTTTATTTATATTTTAGTTAGTTTAACGATTTAAGTTTAATGTGCTTTTCTGTTTTTGTATGTGACTTAAAATGTGTTATAATTTTTTATTGAAATTTTCCAAACGGAATTAGAACATTTTGAGACCTAGAATATTTAGGAACAAGTATAAGTGAATGTTTTCTCCACCAGGTAATAGAAATCTTTAATTGTATATTTTAGCTTGTTTGTATGAATTAATGTCTGATTATTGAGTTCAATTGTATGATAAATTTTACTCTGTGATACTGGATGTACACTTGTGAAGATTGAATTATTCGGAAAAGCACAATTTTCATTTTTTTAGTAAGTTAAAATCAAATTACACATACTTAAATTTCTGTAAAAAAAAGAGGTATGGTCTAACTTTTTCAAAAGCTTAATTACAAAAATTAATTTGAAATTCAAGATATAAATGAAGTGATTATATATTTTGTTTTATTGCCCTTAAAATACCCGTGGAGAAATTTGAGGAAGAAGACCATACTTCATTGACTTGTACAGCAGCCAGTCCAAACAAAAAGAAGACAAAGAAAGTATAATCTTGAACTTTACAGGTAGTTTAAAATAATAAAAAATATATATAAAACTTTGACCATTAGAAATCAATATTTTCTACCTAGACATGAAGTTGATTAGTGAAAAAAAGAAAAAAAAAAGGGTAGGCCCTCTGGAATGTTTATATAAAAAGTAAAAATGCAAAAAAATTATTTACAATATCACTTTTGTAGTGATAAATAGAACTATTACCTACTTATACAAATTTTATCACTCAAAACTTGTTTAAATACTAGATATGAATATTAAAAAATAAATTAGGATATATTTTCAATAATAAAATTTTAAATAATAAAATAAGAATAATAGCAAATAAATTAAAATATATTTATCTCATATAAATATAGAAGAATTTTGTCTTAATGAAACTCTAATAAATATGTCTCGAAACCCATTTTAAAAGAATTTAATATATCTTAAGAAAAGTAAAGACATAAAATATTTAATAATTCTAAAAAGTAGTTAATATTAACTTATTAATATTAATTTTTAAGTTGATTTTTGGTGTTTGAGTTGAGCTCTCTTTGTCGCTCTGATTACAGATTATCGA

Gene Sequence:

>Vu_15737(+)