Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15735	LG4	11284504	11284962	receptor-like protein kinase FERONIA	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/A	11284545	synonymous_variant	p.Glu14Glu
C/G	11284557	missense_variant	p.Asn18Lys
A/T	11284625	missense_variant	p.Lys41Met
A/C	11284628	missense_variant	p.Lys42Thr
G/T	11284653	missense_variant	p.Glu50Asp
C/A	11284706	missense_variant	p.Pro68His
A/T	11284776	synonymous_variant	p.Thr91Thr
G/A	11284786	missense_variant	p.Val95Ile
C/T	11284804	missense_variant	p.His101Tyr
C/A	11284819	missense_variant	p.Gln106Lys
A/G	11284853	missense_variant	p.Asp117Gly
T/A	11284876	missense_variant	p.Phe125Ile
G/A	11284927	missense_variant	p.Glu142Lys
G/C	11284936	missense_variant	p.Asp145His
C/T	11284940	missense_variant	p.Ser146Leu
C/G	11284947	missense_variant	p.Asp148Glu
A/T	11284948	missense_variant	p.Met149Leu
A/G	11284962	splice_region_variant&stop_retained_variant	p.Ter153Ter

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15735.1

MLSFIGTIGYIAMEQFVNLTITDKTDVYSFGMVLFEVVSGKKYMSLITEEEFPIEEKVDPKIKGKIAPESWQVFIDIMQECLKYEVDERPTMGEVEVQLEHALSLQEQADITNIHGDYVLLSETFIIFPKPELEDEDIAITEDSDSEDMFHR*

CDS Sequence:
>Vu_15735.1

ATGCTTTCATTTATAGGTACTATTGGCTACATCGCTATGGAGCAATTTGTGAACCTGACCATCACAGATAAAACCGATGTTTATTCATTTGGTATGGTTCTATTCGAAGTTGTGAGTGGAAAGAAATATATGAGTTTGATTACAGAAGAGGAATTTCCGATTGAAGAGAAAGTTGATCCGAAAATCAAAGGAAAGATTGCACCTGAGTCTTGGCAAGTCTTCATAGATATCATGCAAGAATGCTTGAAATACGAAGTAGATGAGCGACCAACAATGGGTGAGGTAGAGGTGCAACTTGAGCATGCTCTGTCGTTGCAGGAACAAGCAGATATCACAAACATCCATGGTGATTATGTTTTATTGTCTGAAACCTTTATTATTTTCCCAAAGCCTGAGTTAGAAGATGAAGATATCGCTATAACAGAAGACAGTGACTCAGAAGACATGTTTCATAGGTAA

Promoter Sequence:
>Vu_15735::LG4:11282504-11284504(+)

TATTGTATCTAAAGCTGTTATTCTAATTATTATGTACTCTAGTTTAGATTTCAAAGAAAAATAAATTATTGCTTGAGCCTAGTGGAAATAAAGTCGATTAGTTGGTCATCTATTGTTGATAGCGAGTTCCAATATTCTAGAGTGTAGTGTGTTGATAGCGCAGAGCGGGTTGAGAGTGGAAGAAACAAACAAAAAAGATTCAAATTATGCCTAAACGCCGTACTAATTGACCATTTAATATATACCAGATGAATGAAGAGATAGGGAAGAAAACTCATATGGACTATTCTACAACACGTTTTTATCTTCTTTTTCAAAGGGGAAACGCGTAAATGAAACCAAAACAGGACAACCTTAGCTATAATGTTTGAAGAGGGCTAGATAGATGAATGCTTCTGGGCAAGTGCCTAGACTAGTAATTAATTAAAGACTTCACTAGTGCAGTTAGGGGAAACGACAACGTTTATTTTCGTCAATAGACAGCGGTTCTTGAATCGAGGCATATCTAGACGAGATAAAAAGTCTACAACTTTTTGCTTCGATTTTGAACCGAGACATAAAAGGGTAGGATACTGTCTCAGTTCAAAGTTAACCGAAGCAGTAGATTTTTTAATTTTTTTTCGCAGGACTTTATACCACGGTTCAGAGGAAACCAAGAAGTATGTGTAACACCCCTAACGGAGTGCCACTAGAAAATAACAAAATCTAAAATTTACGCCAATTTTTTTTTCATTTAAAAATCAACATCACGGAAACAAAACCTCAAAGGTTTAAGCGTCTTACAACAAAAAGTTCAAACCTTACAAATGTCAAATCCATTAATCAAAAACATAAAAATAACTTTAAAACATGATAAATTTCTCCATAGTTATTCCCATAAAACTTTAAGCGTCTTACAAAACTTCTTCTTCTTCTTGTTTCATGCATTCTCATGATGTTTGGCTTGCAAGGCTCCTTCAATGACACCTTCTTGTCCCATGGCTCTTCTTTGCTCATGTGCATGCAAGGCATTGAAAAGCTCTACAAGAGTGATCTGATTAAGATCCTTGGTATTTTCCAAGACTGAAATAGATGCCTCAAATTTTTCACTGTTAGAAGAATTCTTTTCAATAACTCTGGAGTCTGTGAATGCAGAACCAAGCAATCTGATTTGGTTTGCAATGTCCAATAACCCATTAGAATACTCTTTAAATTGATTTTGTTTCCTTCATCTTCTACAGCTCGAATTCTCGAACCAAGTTCAGCACAAACATTCCTTTGATTCTTGCATTTCCTTCATACTTTGTCTTGAGATAATTCCATATCTCATACGGCGACTTCAGAGTCATAATTCGAGTGAATATATAAGATGAGACTAAAGCGAACAAACAAGTCTTTGCTTTGGATTTCTTGGTCTTTTTCTCCTTGTGCCATTTGATTTGCACCATAGTAGGATATTCTCGGAGGGTAGGAATTTCATAAATTTTTTCAATTGCTTCCCAAATATCCACGTCTTCATATATGCCTCTATACAAACTACCCAAACTTGGTAGTTTTCACCATCAAACACCGATGGAGAAATTGAAGACAGATTGGGACTTGCTTCAACGTCCATGACAAAGACTCACATACCCCTTAAGAATAAGGCTCTTAATACCAATTATTAATTTTTAGAAGCAAAACAATAGCTATTGAAGCCAACAAAACGTATGACTTATAAATAGAAAACATTGCAATATTTAAAACTTAAAAAAGTAACTACCCACAATCCTAATTTTAATCCACCACACATAATAAACAAAATAACTAAATCCTAAAAATTAGAACAGTGACTCATTTAAATTAATAATAAAACACTCTTAAAGCATTTTTTTTAACAAACACGACTTTCTTTATATAAAGTCGTATTTACAAAGCACATTAACTAATTCCTGCAAATTGTTTTCAATTATGGAACCTTCGAGGTGAAGTTCCAGCAGAATGGTAACAAATCCAAGATTTTGTCAGTTAGAATAAGACAA

Gene Sequence:

>Vu_15735(+)