Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15720 LG4 11161724 11162695 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 11161764 missense_variant p.Thr311Ser
G/C 11161777 missense_variant p.Gln307Glu
C/G 11161798 missense_variant p.Glu300Gln
C/T 11161802 synonymous_variant p.Gln298Gln
C/T 11161805 missense_variant p.Met297Ile
G/T 11161817 synonymous_variant p.Gly293Gly
C/A 11161835 synonymous_variant p.Thr287Thr
G/A 11161836 missense_variant p.Thr287Met
G/A 11161843 stop_gained p.Gln285*
G/A 11161868 synonymous_variant p.Asp276Asp
G/C 11161896 missense_variant p.Ala267Gly
G/C,A 11161898 missense_variant p.Ile266Met
C/T 11161943 synonymous_variant p.Glu251Glu
C/A 11161946 synonymous_variant p.Val250Val
C/A 11161958 synonymous_variant p.Pro246Pro
C/A 11161985 missense_variant p.Glu237Asp
A/G 11162090 synonymous_variant p.Tyr202Tyr
G/C 11162096 missense_variant p.Phe200Leu
C/T 11162137 missense_variant p.Val187Ile
C/G 11162145 missense_variant p.Gly184Ala
C/T 11162149 missense_variant p.Gly183Arg
C/T 11162165 synonymous_variant p.Leu177Leu
C/T 11162183 synonymous_variant p.Glu171Glu
G/C 11162194 missense_variant p.Gln168Glu
A/G 11162202 missense_variant p.Leu165Pro
A/C 11162244 missense_variant p.Met151Arg
C/T 11162247 missense_variant p.Gly150Asp
T/A 11162254 missense_variant p.Thr148Ser
T/A 11162276 synonymous_variant p.Ala140Ala
C/T 11162300 synonymous_variant p.Arg132Arg
A/G,C 11162312 synonymous_variant p.Ser128Ser
A/G 11162321 synonymous_variant p.Val125Val
G/A 11162351 synonymous_variant p.His115His
G/C 11162389 missense_variant p.Leu103Val
C/G 11162403 missense_variant p.Arg98Pro
G/A 11162404 missense_variant p.Arg98Cys
C/G 11162413 missense_variant p.Glu95Gln
G/C 11162434 missense_variant p.Pro88Ala
G/T,A 11162441 missense_variant p.Asn85Lys
G/A 11162462 synonymous_variant p.Leu78Leu
G/A 11162468 synonymous_variant p.Leu76Leu
G/T 11162470 missense_variant p.Leu76Ile
T/G 11162516 missense_variant p.Lys60Asn
A/G 11162537 synonymous_variant p.Val53Val
G/A,* 11162541 missense_variant p.Ala52Val
C/T,* 11162542 missense_variant p.Ala52Thr
A/C,* 11162549 synonymous_variant p.Gly49Gly
A/G 11162577 missense_variant p.Val40Ala
C/T 11162600 synonymous_variant p.Val32Val
G/A 11162606 synonymous_variant p.Ser30Ser
T/C 11162611 missense_variant p.Lys29Glu
G/A 11162616 missense_variant p.Ala27Val
C/T 11162621 synonymous_variant p.Thr25Thr
C/G 11162641 missense_variant p.Glu19Gln
G/T 11162657 missense_variant p.His13Gln
A/G 11162660 synonymous_variant p.Cys12Cys
T/G 11162684 synonymous_variant p.Thr4Thr
C/G 11162693 start_lost p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15720.1
MTTTFNIMGEHCHHFSLAEIQSSLTNAKKSLVIGEDSFGVVYKGYLNKGATAVAIKWFNKGSLSGLSESQLKNEVLFLCQLHHPNIMPVIGFCIERYRHLILLHEYMFNGSLNDHLHHTNNHKFVPLSWERRLRICIGVARGLHYLHTGGMCSVIHNFFKTQYILLDQNWEPKISGLLLSKRGGVDVASSSLVARNHDTFAYCDPEYAASGILTVKSNVFSFGVVLLEVLSAKQARELYLERVKNPNYSVELHAEKIVDPFIKSKIAPDCWKTFIDITERCLHKQGTERPNMGEVEMQLELALQLQQKSQTYVDCNLDFVQTV*


CDS Sequence:
>Vu_15720.1
ATGACAACAACATTCAACATCATGGGAGAACATTGTCACCACTTTTCACTTGCAGAGATACAGTCATCGTTAACGAATGCTAAGAAATCCTTGGTGATTGGAGAAGATTCATTCGGGGTAGTGTACAAGGGTTATCTGAACAAAGGTGCTACCGCTGTTGCAATAAAGTGGTTCAACAAAGGTTCTCTTTCTGGTCTCTCAGAATCACAGTTGAAGAACGAGGTTCTCTTCCTCTGTCAACTCCACCACCCCAACATCATGCCTGTAATTGGATTTTGCATTGAAAGATACCGCCATCTGATTCTTCTACATGAATACATGTTTAACGGTTCCCTCAATGATCACCTTCATCATACAAACAATCACAAATTTGTTCCACTTTCTTGGGAAAGGAGGCTTCGAATTTGCATAGGTGTGGCACGTGGATTGCACTATCTACACACAGGAGGCATGTGTTCTGTGATACACAATTTTTTCAAAACACAGTACATCCTTTTGGATCAAAACTGGGAGCCTAAAATTTCTGGTTTGCTGTTGTCCAAAAGGGGAGGCGTTGATGTTGCAAGTTCATCTCTTGTTGCGAGAAACCATGATACTTTCGCATATTGTGATCCTGAGTATGCAGCCTCTGGCATCTTGACTGTGAAATCAAATGTGTTTTCATTTGGTGTGGTTCTATTGGAAGTTCTGAGTGCAAAGCAAGCGCGAGAGTTGTACTTGGAACGTGTGAAGAACCCGAATTATTCAGTGGAGTTACATGCAGAAAAAATAGTTGATCCGTTTATTAAGTCCAAAATCGCTCCAGATTGTTGGAAAACGTTCATTGACATCACTGAGAGGTGCTTGCATAAACAAGGAACGGAACGACCAAACATGGGCGAAGTGGAGATGCAGCTTGAGCTTGCGCTTCAATTGCAGCAGAAATCCCAAACCTATGTTGACTGCAATCTTGATTTTGTCCAAACTGTTTAA


Promoter Sequence:
>Vu_15720::LG4:11162695-11164695(-)
ATGTGATATTTATTAAGAAGATTTTAGAAAAACTAATGTATAAATACTCATACAATTTTTTTCATAAGTAAAATAAAAACTCAGTGCCCTTTATATAGATAATGATAACAATAAAACAGGACGAAGACATGTGGGAATAAAAAATAATAAGATTACAAATATTAACCTAAATAGAGAGGATGAAGATACAAAGTACAACCAAGATACAACTATATGAGTATGACAACAGTAAAAGGACTAAATTGTCCTTAGTTACAAGCTAACATTTTCCATCTACATTCTATACGAACCACGGAAGAATCCGTCGATGTTTTCACCAAAGCTACAATATGCATATTTCAAGCCTTGTTTCCAAGCTCGGAGTGCTAAATATAAACACTCTAACTTGAGTTTTTCTTCGGTATTGGGCTTTGAGCTTGGGCCTATATTGGCCTTTTTCGCTTTTTGTTGTTTAAAGTAGTGTTTCTTCCTGTAACTCCCTTTTTTTCTCCCTACACCCTCATAAATTCCAAAGTTTCAATTTTATCTATCATTAAAATGTATTAAAATCCTAATTTGAGAGTGTGCACATTTTCTGTTCCTTTTTCCTCTCTCATTGCTGCTCTGCACCTACCTCCCTCCATTGTTTGCCTTTATTCTCCCGTAATTTGGAAGATCCCTTAAAACGGATTCAATTGAAATCTTCCTTATTAGAGATTGAGGAAGTTTTTCTTATAAAATAGATGGCACAGTGGAAGCAAAAATGGAGACAAAATAAACACTGAAACCCTAAGAACTATCTGTTTTCCTGTATCCAAACTCATTCTAGGTTCTCCTAATTCACAACAGAACATTTTCCTTTCAATGTTCGACGTCTTGATCGTCTGCTGAAGTTAAACATGAAACCTGTTAAAAGATATAGATAATCTAATGTGATAAAAGAAAGAAAGTAAAATAATTATGATAATAACTTTAATCAGTAATAATTTGGAAAAAGAAATATATTTAATTAGCATGTATAATATAAAGATTTTTTATGTTGTCATTGGATTAATAGTTTTACGAGTATTTTTTTATTTTGTAATAATTATATAGGATTTGAAAAATATCAACACTAATAACATATATCAAATTTGAACTCAATAAAAATATTACATAGATATTTGAGTATCATTCTTTGAAAAAAAAATCAGGCTTAGCATAATAACATTTTCAACACGCACATTCAATGCCAAGACTTGGCAATTTATAATATAAAAGTATCCTCGTATATGCAGTTTCTATTTTTTTTTTCTTTTTATGTATTTAACCTTAGACTAGACACATTAACCTTTTCGAAGTAGAACTTGTAATGAACCGCAAACAGTAAACGACCGTAATATTTTTTAGCAATTTTTTTAATAATTTTTTGACAATCACTAATCCATATATTTAAAATAAATCAATCATAAATATAGATTGTTGTAAAAAAATTGTCAAAAAGAATTATTAAAAAAACATTTTTCAACAGTAAAAAAGTATTTTTACGTTGACAATTGATACATTTAAAATATTTTTTTAATAATTTTTTGATAATTATTTTGCATGCAGTTGTTTCAACGCAACGGTTGGAGTGTGTAAAGCGAAATATGTTATTATTAGACAAAACGTTAATTAATCAGGCATGGTGCCAAAGGCTGAAACAGAAGGAACCATCATGACCAAGTCTAGGACTTCACCTATGTGGCTTTCTCTGGCTTAGTCTTCTACTCTTGCTGCCACAAACCAAGACTCGGCAACATGCAACATGCAACATGCAACATTTATTTTTCCATATACACAATCAAGAATATGTTTTTCCTAATAACGTCTGACCAAGTCTTAATTAATTTAGCTATTTAGAAACAACCTTATACATCAGTAACAGACCTTGATATAGATGGTTTATTTATGCCCTAGACTTCTTCAACACTGCACGAATGGGTCTTCTTTCACTTTTTTCATGTTTCTCTAAACCTGATGCAGGGGTAAACAGATTTCTC


Gene Sequence:
>Vu_15720(-)
ATGACAACAACATTCAACATCATGGGAGAACATTGTCACCACTTTTCACTTGCAGAGATACAGTCATCGTTAACGAATGCTAAGAAATCCTTGGTGATTGGAGAAGATTCATTCGGGGTAGTGTACAAGGGTTATCTGAACAAAGGTGCTACCGCTGTTGCAATAAAGTGGTTCAACAAAGGTTCTCTTTCTGGTCTCTCAGAATCACAGTTGAAGAACGAGGTTCTCTTCCTCTGTCAACTCCACCACCCCAACATCATGCCTGTAATTGGATTTTGCATTGAAAGATACCGCCATCTGATTCTTCTACATGAATACATGTTTAACGGTTCCCTCAATGATCACCTTCATCATACAAACAATCACAAATTTGTTCCACTTTCTTGGGAAAGGAGGCTTCGAATTTGCATAGGTGTGGCACGTGGATTGCACTATCTACACACAGGAGGCATGTGTTCTGTGATACACAATTTTTTCAAAACACAGTACATCCTTTTGGATCAAAACTGGGAGCCTAAAATTTCTGGTTTGCTGTTGTCCAAAAGGGGAGGCGTTGATGTTGCAAGTTCATCTCTTGTTGCGAGAAACCATGATACTTTCGCATATTGTGATCCTGAGTATGCAGCCTCTGGCATCTTGACTGTGAAATCAAATGTGTTTTCATTTGGTGTGGTTCTATTGGAAGTTCTGAGTGCAAAGCAAGCGCGAGAGTTGTACTTGGAACGTGTGAAGAACCCGAATTATTCAGTGGAGTTACATGCAGAAAAAATAGTTGATCCGTTTATTAAGTCCAAAATCGCTCCAGATTGTTGGAAAACGTTCATTGACATCACTGAGAGGTGCTTGCATAAACAAGGAACGGAACGACCAAACATGGGCGAAGTGGAGATGCAGCTTGAGCTTGCGCTTCAATTGCAGCAGAAATCCCAAACCTATGTTGACTGCAATCTTGATTTTGTCCAAACTGTTTAA