Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15649	LG4	10469984	10471204	PREDICTED: ethylene-responsive transcription factor CRF5-like	Map

Annotations

category		relationship type		keyword
Pathway		B 09182 Protein families: genetic information processing		C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
C/T	10470262	synonymous_variant	p.Asn93Asn
T/A	10470312	missense_variant	p.Leu110His
T/C	10470535	synonymous_variant	p.Asn184Asn
G/T	10470697	synonymous_variant	p.Gly238Gly
G/C	10470738	missense_variant	p.Gly252Ala
G/T	10470850	missense_variant	p.Glu289Asp
T/A	10470973	missense_variant	p.Asn330Lys
A/T	10470977	missense_variant	p.Ser332Cys
A/T	10471067	missense_variant	p.Ile362Leu
G/T	10471169	missense_variant	p.Ala396Ser
G/T	10471193	missense_variant	p.Gly404Cys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15649.1

MARKRKASEEVKERNLSDETMAWDEVMKEAAALGSGWKLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSYQSSSTPALPSKITNLLLQRLKARNDTSTKPCTVSSSSSSTSLLINQQQSQQEDVRGTESTYFTLDQFSDFLNDPEDYSTNNNEFSNDSAQTDCITNSLESCLNENDDCRENEKEMVMEFDFNSVTQTSSADVNSGGEREEDSEEGTDLSGQDFQFLDNVVPSSYHYSLFEITEEIEEQLEAENCGDEPSMFREVLKRMKYERKFSASLYAFNGIPECLKLKVESVNKNRSGVCISNELTNLKMACSKNKIEAIEKNEEHIEAMDGKEPQTSVGMDCSSPSFSSSIDDELLLWNALDLPTVCGVN*

CDS Sequence:
>Vu_15649.1

ATGGCAAGGAAGAGAAAGGCTTCTGAAGAAGTTAAAGAGAGAAATTTATCTGATGAAACCATGGCATGGGATGAGGTGATGAAGGAAGCTGCTGCACTAGGAAGTGGCTGGAAATTGAGGAAGAGATTTGTTGGTGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAGATAAAGGATACAATTCAGAAGATAAGAGTGTGGTTAGGAACCTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCATGTCTTCTTCGAGGTGCCAACACTAGAACAAACTTCTGGCCCAGTTATCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTCAAAGCAAGGAATGACACTAGCACAAAGCCTTGCACTGTTTCTTCATCTTCCTCCTCCACATCTCTTTTAATCAACCAGCAACAAAGCCAACAAGAAGATGTACGTGGAACTGAGTCAACATATTTCACATTGGACCAATTCTCAGATTTCCTTAATGACCCTGAAGATTACAGCACAAACAACAATGAGTTTAGTAATGACAGTGCACAAACGGATTGCATCACAAATAGTCTTGAATCATGTTTGAATGAGAATGATGATTGCAGGGAAAACGAAAAAGAAATGGTAATGGAATTTGACTTCAACAGTGTGACACAAACATCAAGTGCTGATGTAAATTCAGGAGGGGAAAGAGAGGAAGACAGTGAAGAAGGAACTGATTTGAGTGGTCAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCTAGTTATCATTATTCACTTTTTGAGATCACTGAAGAGATTGAGGAGCAGCTGGAGGCTGAAAACTGTGGTGATGAGCCTTCAATGTTTAGAGAAGTCTTGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAAGTTGAATCAGTAAACAAAAATAGAAGTGGGGTTTGTATTTCTAATGAACTAACCAACCTCAAGATGGCTTGCAGCAAAAACAAAATTGAGGCTATTGAGAAGAATGAAGAACACATAGAAGCGATGGATGGGAAAGAGCCACAAACATCAGTTGGCATGGATTGCTCTTCACCCTCTTTTTCATCCAGTATTGATGATGAACTGTTACTATGGAATGCACTTGATCTTCCTACTGTTTGTGGTGTTAACTAG

Promoter Sequence:
>Vu_15649::LG4:10467984-10469984(+)

TCAGGAAGGTGTTGTAATAGCCCCTGGCTTCCTCTACTTAACTCAAAAGTTTAAGTTCATAATTAGCTTCTTATGGCTTCACTTGTAAGTAACATTGTAGAGTTTAACAGATTGTTTGTTATGCTAAGACAATGTACCTTCATCTTCTGACTTTGATTTTATATTTGATTATCCTTTTGTAAGTTTCATATGTTCTCTTGTTTGCATGAAATATTGTTGCCACCCGTTTTGGATAAACTTATTTGTACATAATACTTGGAAACAAAAAAAATGTTGCTCATTAACTAATATTAGTTTTTGCATATTTTTTTTCCTCTCTTCGTTATCGTGTAAGTTAAATATTAACTTTTGAAAAAACTAGTATGAGAGAGTTTTTGTAAATTAATTTATGCATAAAATAATTATAGGTTTGAAAAACATAATTTAGTCTATTTTTGTTGTTGTTTCGTATAAAATATTATCAGGAATAGTATTATATATGCCATTAATCAATTGCAAACCACCATGATAAGTTTGTGATTTGCGATTGCATAATGTAAGGAAACAACTCTTTTCCATTGTCTATGATTATTTAATTCTAAAATTAATAATATGGTGTTCGAAAATTGTTTATACATAGTGTCATTCATTGTTTGAGATATCTCTTAATAATCCTATGTATTGAATGCAAAATTCACCTTAAGAGCTTATTCAAGTCTTGAATAATAATAATATTAAACAACACTTTTTTTATCGACCATTTTAATTATACAATTTTTACTCCTATATTAACTTCACATTCAATATCTGAAAAAAATGCTAAGCAATACTACTATCCACTTACGTTGAGACTCAATTGTGACACATCAACATTTTAAATATAAAACATGAGAAGAATGGCATAAATATATTTCAGTACAAAATATCATGATATTTATATTTATAAAAACATGACAGTGACAACTTTCTCTGATATGTATGTAGAGAACAATACCCTCCAAATGTGCCTCACGAAAGCATTATTCATTTTAATGTGTTTGTGTTTGTTTTCTTGTCAACTTTCATATTTGTTGCCAGTTTCTGTTAAGACCATTATTATTCTTGCTGAGTCAAGACACATAAAATAAGTCCAAATGGGCCAAACTTTTTCCTAAATTTATTCTGTTCCTTACAACTGTTTAAGACAGACAAACCATGAATATTTGTTAAGACACATTATAATGTTTAATGATCTTGTGATCAAATTTAAGACAAGTTTTGGGACCCAGCTTCCTGAATATTTGTTTAGTGACTAAGAAAAAAATAAATGTATTTGTAAGAAGTTTGCAGATAACATCAGAAGATGACACAATTATTGATCAATCAAAATTTGATGACACAACAATGTAAAATCATTTGAATAACTAAACTGATTCCAAGCTATATATAATCCGAACGCCAACTGCAACTACCTACGGTTTCTGCATCTCAGTTCATAGATTTTGGCTACACTGGGATTTTTCTTTTCTGTTCTGTCTTTTCTTGACAAAATGCCGCGTAGTTATGTCTCAAATCTCCTTTATGTCTAAAAAGTTTGCCAGAAAGAGCAAATGAACAGCGTGAAAATCATAATCTTAAAATAGATACTAAATCAAATATTGTTTTAATATGTAGTGTTGACCAGTTCAAGCTAGCATTATAGCATATTTGAATTCTTATATATGTTCAGAGAAAGTGAAATCTAAATACCCTTTATCCATATCCAACCAGCTTGCACCAGTTAAAAAGTCTGAGAAGCTGCCAAATGTTCAGTATAAAGCCTAAATTATAAAGAAACAAACAAATGGAACCAATATCAGTGTGTGACCTGTTCCCCTCTAAAAACTGAACTATTCCAAAGTTTCACTCACCACACTACCCCTCCTTATAAAAGCCTAAACAAGCACCAAAAATTCTCAGCAAAACCAAGCTCGGTACCTTAAAAGAACCACTTAGAAGCATAAGAAAACCAAGGAGGCAAGCAGTTTAACTTGTCAGGAAAA

Gene Sequence:

>Vu_15649(+)