Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15607	LG4	9964510	9965481	PREDICTED: zinc-finger homeodomain protein 9-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	9964576	synonymous_variant	p.Pro302Pro
G/C	9964609	missense_variant	p.Ile291Met
C/T	9964616	missense_variant	p.Ser289Asn
C/T	9964620	missense_variant	p.Asp288Asn
T/C	9964712	missense_variant	p.Asn257Ser
G/C	9964723	synonymous_variant	p.Ala253Ala
T/A	9964734	missense_variant	p.Asn250Tyr
C/T	9964867	synonymous_variant	p.Lys205Lys
A/G	9964945	synonymous_variant	p.Ala179Ala
G/C	9964960	synonymous_variant	p.Leu174Leu
G/T	9964999	synonymous_variant	p.Ser161Ser
T/G	9965344	synonymous_variant	p.Val46Val
A/G	9965459	missense_variant	p.Ile8Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15607.1

MDITPTTIINNTTPSATTKSPEHDTETPTRINTPTATKALSFSNGVLKRHHHHHHHPIPAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQAAGANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSALTRKRFRTKFSQDQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEIGVDRSVLKVWMHNNKNTLAKKDNNVNITSNDNITNNINDNDANGGVKGFEEDPDSNIGGGAEDRSEDPSRNHFGGLNVGANANGSSSTS*

CDS Sequence:
>Vu_15607.1

ATGGACATAACCCCAACAACAATCATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCAACCAAGGCCTTGTCTTTCTCCAACGGGGTACTCAAGCGACACCATCACCACCACCACCACCCCATCCCCGCCGCCGTCACCTACAAGGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGGCACGCTTTAGATGGATGCGGCGAGTTCATGCCGTCCCCCACAGCCACTGCCGCCGACCCCAGCTCCATTAAATGCGCAGCATGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCAGATGAGCCGCCCATCGCATCCACCACGCATGTGATCGAGTACCAGCCGCACCATCGCCACCACCCTCCGCCTCCGTTCCAGGCAGCGGGGGCGAATCGAAGTCCGAATTCTGCATCCCCGCCGCCGATCTCCTCCTCTTACTACCCCTCCGCCCCGCACATGCTCCTTGCCCTCTCCGCCGGGCTCGCTGCTCCGCCTGAGAGCACGGCCGCACCCTCCGCGCTCACCAGAAAGCGCTTTAGAACCAAGTTCAGCCAGGACCAGAAGGAGAAGATGCACAAGTTCGCTGAGAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGATTCACGAGTTTTGCAACGAGATTGGCGTGGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATAATGTTAATATTACTAGCAATGATAATATTACTAATAATATTAATGATAATGATGCAAATGGGGGTGTCAAGGGTTTTGAAGAAGACCCTGATAGCAACATCGGTGGTGGTGCTGAAGATCGCAGTGAGGATCCGAGTCGCAATCACTTTGGTGGGTTGAACGTTGGTGCTAATGCTAACGGGTCTTCTTCTACTTCTTGA

Promoter Sequence:
>Vu_15607::LG4:9965481-9967481(-)

TAAGATATATTGTGTGCTACTTTCACCTAATATCCTATTTTGATAGTCATAAATTTAATATGAGTACTGTTACTATTGCTATTATGTGATTTGTGAGTTTCTATGCATCGATCCAGCGCTTGTCTACACGCCATTCCATGATTAAACTTTAGCTCTTCTGTCTTTAGTCGGCTTACGTCACACTAACATAAAAATATTCTCTCTTTATTCAGTGTCCCTAACCTCCTCCTTTCTCTTTTACTATGTTCCGTAAAGCACTCTTATCATTCCTTTTCCCTCATTTTAATAATTTAATTCATCTATCTAGTATACAAGAAGAAAAATACTTATTAAAATTAAATAAAAAACTATGACAACACGGCATAAATCTAAATATATAAACTCTACCGAGAAGGATAAGGAACCTATATTTAATATGTAATGTTAAATTTATGTGAGTTAGGTTATGCAAATATAATAATGGGGAGATGTTGTTAAAGGTTTTGGAGGGTATTAAAAGAAACAATTTTTTAGTAGTAAAAATAGTAAAGAACTTTGAAGAAACCACAGGGCTTTGCACACGTGTGAGACACGTGATATGTTGACACGTGTCGTCCGATTTGGTGGGTCTTTTAGGTGGTTAAGTGGTAATAAGGTGGAAGTGAGAAGGGGTTTTGGTCCTAATAAAAAAATGTACATCTATACCACCTAGTTCCCGGGTACGGTTTCAGGACATGTTTCTCCTGTCGGGGCCAATCGAGCAGTTACGTAATGCGACGCCGTTTCCCTTGCCATGATACCGTTGTATTGTCCGTAATGCCGACAAAGATACTTCTCAGTCCCTTCAAAACAAATCGAGGAGATGTAATATTATAGTATTGTGTGTGGTTTTTCAATTTAATCTTTGTTATTACTTTCTCTTCTGGTTACTCTCAACAATAAAAACTTATTTAAAATAAGAATCTTCAGATTATATAACCTTAAAGACTTAGATAATAAATATTTAATATTTTGAAAAAGTTAGGTAAATAGTTTTGTTATTTTGAGAAATTATTTAAGAAGATAATTTCTTAAGAAGATAAAAGAATGGTTTATCCATTTAAGTTTAGATGTGATGTTAATATAAGGTGGGGAAATTGATTTGAAAAGAAAAGATAGAAAAATGTGTTTGTTTTGTTGGATGTGTATTAAGTTGGGAGGGAGAGAGAGAGAGAGAGGGTGGATTAACCAAAGGGTTATAGGAAAAGAGAAAAAGTGAAGAGGAAAAAAAGAAAAGGGGAATGGGTTGCATCCCTAAAATGAAAAACCTCAATGATTTTACTGTGAAAGCCTGTCCCGTCCCGTCCTTCCCTGCCAACTTGACAAATTAAGATGGGTTACAGTGAATGGGCTCAGAATTGCAGACCATACCATTCTCATGCTAAGAAAGAAACCACTCTCCCACCCTAAACTCACTGCACCACACTAACCACTCAAAATCAAATCAAATTCCCAAATTAAAACCATTACTATTCTACACTACTCTCCTAATAACTAATAATAGTGGTAATAAACTGTAGGGTCATCACCCCAAGCGCGCATATTTATTACTCACATCTAACCTCAAGTGGGGTCAATAACTTAACCATGGATTAGAACCAGGGTTAAAACACTACTGGTTAAGAAGCTCCACCACATAACCCAATCCCAAACCCAGATTTTTATTATCAACACTCATCTCATCACTCTCTCAACTCAACTCAACAACACCATCATCGACACTCCTCTTTCTCCTCCCTCCTCCAACCCCCCCGGCCCCTTCCTTTTTCTCTCTTTCCATTTTCTTCCTATTTTTTTCTCCCGTATACAACAGTGCCACCCACTACCGCCACCTCCACCACCTCCACCACCATACTTCAATTCCTGCAACTGTGACATCTCATACTTCCATCTAATCTCCACCAAAAAACCTAACCCTAAAAAGCAAACCTTTTTTGGTTTTTTAAATATTGTTACTTTCACTCACCCTAGATGTTAGAGCC

Gene Sequence:

>Vu_15607(-)