Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15606	LG4	9939856	9940143	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	9939906	synonymous_variant	p.Cys17Cys
T/C	9939918	synonymous_variant	p.Asn21Asn
C/T	9939930	synonymous_variant	p.Ile25Ile
G/A	9939972	synonymous_variant	p.Ala39Ala
C/A	9939975	synonymous_variant	p.Ile40Ile
G/A	9940058	missense_variant	p.Gly68Asp
C/T	9940074	synonymous_variant	p.His73His

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15606.1

MQSMRRVILRRQPPRRCPTNNTVTIVRNVQHGECQRNHAINVGGFAVDGCMEFFPSGAEGTAGALICGACGCHKNFHRREIHIQVTCRCTSSDNG*

CDS Sequence:
>Vu_15606.1

ATGCAGAGCATGAGGAGAGTGATTCTGAGAAGACAGCCCCCTCGACGATGCCCGACCAATAATACGGTGACGATCGTGAGGAATGTGCAACATGGGGAGTGTCAGAGGAATCACGCGATCAATGTCGGAGGATTTGCTGTGGATGGTTGCATGGAGTTCTTTCCGAGTGGAGCAGAAGGAACTGCTGGGGCTCTGATTTGTGGTGCATGTGGTTGCCACAAGAATTTCCATCGGAGGGAGATACATATTCAAGTTACTTGTCGCTGCACTTCTTCTGACAATGGATAG

Promoter Sequence:
>Vu_15606::LG4:9937856-9939856(+)

CTGTTTAGAACCGAAGCACTGGATCACATGTCAGGCCAAAACGCAGTTTTGCAGAGGGTCAGGTGACTTTTTTTACATAGTATTAGGCATCGGTTATGCTTTGAATCGAGGTAATATGCACTACATGCTTCGGTTCTTCACAAACCGGGGCATATAAGTTCGTCTAAACTACAAGATTGCCACCGCTTTCAGATGTGTTTCGATTTTTCTTTGATCGAAGCCTATTAGGCGAGTTAAAAAGCCTATTTTTTACTAGTGTTTAAGCAGCGGTGAATTCTCTTTTCTCTTGAACGTCGTTGGATGTCAGTTTCCTTTGGTCTTGCATTAATGGACATTGATTTGACTCGGGGTTAACATCATTTTGTCACACCAATATCAAATTGACATTTTCGACTAAGACGTTGAAGTTTGGATTGACGTCAAAGATTGGAAGTAACAGACGTTAAAACTTATTTTTGTAGTAATATATCAAATAAATATAAAAAATTTGTGTTTCAAAATATCACCTTTTAATGTTACCAAACTTGCCTCTTAGAATTCCCTATGCTCTACACTAATTGTCTGCAATCAGTGTTCATAGTTTGCTCTTAGGGTAGACGCTCAGGGACTTTAGGGTACCTCTCTAAACACTTGGTGTATCCTAGGTATATTTAGAGACCTTAGAAAGACATGCACCTTAGACTTTAGACAGCTTCACACTCAATGATGGCATCTTACGCTTAGGCCATGAAGGCGCGCTTGAGCGATGTGTAAATCACAAAATTATAGATATGAGATTTTCCCATGATAATTGTAATATGAATAGTGTCTTAAACACTTCTATATATGAATTCCAACATCAAACCCTGAACGTTTTAACACATTACATTCCTCATTCACATGCACTACTCTTCAAAAATTCAACCCTTCTATTTTTATAATTTCATAAACAACTTCAATTACTACAACTTCATTTAAATCATCCATTCCTACTATTATAATATGACTGTCAAGATCTTTTATTTTTATAAGGTATTTTTCAGTACTTGTTTTTATGTTATCTTAACCCTATTTTATAGTTGACATATACAAAAACATCATGTCTTATATTCTTGGTTGCCATCTTAATCAATAATTTGTGCAAGAGTCAAAATATTACATTCAAATTTTATATAATTTAACATCCTTACTGATATAATAAAAATAACAAATAAGTTGATAAAATAACTATTAAAGAATATATAATTTTTTTAGGTGTGTTTTTATGTAGAAATAAGCAAGGTTTTTTCATTCTTTTTTATTTTCCAATTTCAGCATTATGAAAGCAACATGATCAAAATAAACTTCTTAAAAAATTCAAACATTTAAAGAAATTGAATAACGAAATGTAAACAATAAGCTATAAAAGAAGCAAGCAACCAATGACTAGTAATAAAACTAGTCTTGCAAAACATTATTAATGTCTGAAAGACTGTGAATAGAAAAAAATTCTAGTTTTAATAAAAGATTAATATCTCATACATTCATGAGTTAATTGTTATTTTAAAAAAATCGTTTCTTATATTCTAAGAAAACAATCTTAAAAACAAATAACTGAATGAGACTAGTATAGATTTGTTTGGTGAATTAAGAATACTTTCAACCCAAACTAAAATTTAATCCCTCCCTATATTGAGGTAAATTTCAAAGATTTTGCTCATTTCACTGTCCTTTTTCATATTTATGAATCAATTTATTGAACTAAATATAAGAAAAAATGTTAAAACGTGGTTAATGAATATAAGTAATGGTTCATTGACTCTTATGAGTTACTTGCAATTAATAGATGACTCACATCTATACGATATCTTGTGTTATAAATACAGCTTTTAGGGCTAGAGTCTTCATGTCCATCAGAGAACAAAGTTGTACTCTCTCTCTCTCTTTCTTTGTCTTTATTGTTCCCTTTTGCTCTTTCTTTTCTTCTCACTGACAAATTTTACATGAATTTTTGATTGTTTGAAGGTAGAGAATTTGAAGGA

Gene Sequence:

>Vu_15606(+)