Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15582 LG4 9659296 9661287 PREDICTED: ethylene-responsive transcription factor WRI1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 9659303 missense_variant p.Met3Thr
G/T 9659304 missense_variant p.Met3Ile
G/A 9659409 synonymous_variant p.Lys38Lys
A/T 9659552 downstream_gene_variant
T/C 9659577 missense_variant&splice_region_variant p.Ile62Thr
A/T 9659584 synonymous_variant p.Gly64Gly
C/G 9659720 downstream_gene_variant
T/C 9659884 downstream_gene_variant
G/A 9659951 missense_variant p.Arg104His
A/G 9660018 downstream_gene_variant
A/G 9660073 splice_region_variant&intron_variant
G/T 9660151 missense_variant&splice_region_variant p.Arg142Ile
T/C 9660264 downstream_gene_variant
T/A 9660278 downstream_gene_variant
A/G 9660281 downstream_gene_variant
A/G 9660373 synonymous_variant p.Ala144Ala
G/T 9660393 missense_variant p.Cys151Phe
G/T 9660546 missense_variant p.Gly172Trp
C/T 9660577 missense_variant p.Ala182Val
G/T 9660589 splice_region_variant&intron_variant
T/G 9660604 downstream_gene_variant
G/A 9660612 downstream_gene_variant
G/T,A 9660632 downstream_gene_variant
G/T 9660745 missense_variant p.Ser192Ile
G/C 9660832 missense_variant p.Arg221Thr
G/T 9660842 missense_variant p.Lys224Asn
C/A 9660996 missense_variant p.Gln276Lys
G/T 9661137 stop_gained p.Gly323*
A/T 9661139 synonymous_variant p.Gly323Gly
T/C 9661170 stop_lost p.Ter334Glnext*?
A/T 9661253 synonymous_variant p.Gly361Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15582.1
MSMAEGELQATRCVKRRRREVAAAVSSGDDSHHQQLPKQHGGENSTINTTKRSSKFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYGKDMEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDLAAIEYRGINAVTNFDLSTYIKWLKPGGGSSPEAKLETHAVLEGQKVASPSNYSLTEESKSSVIHNSFFSLDSLNSPVGQDNFGSKPYPFSSSKSSSPTALGLLLRSSLFRELVEKNSNVSGDEADDGEVRKSEQPQIASDDDLGGIFFDSIGDIPFVCDPNRYNLELQERDLHSIF*


CDS Sequence:
>Vu_15582.1
ATGTCCATGGCAGAAGGTGAGCTTCAAGCTACACGGTGTGTCAAGAGACGAAGAAGAGAGGTTGCTGCAGCAGTTAGCAGTGGTGACGATAGCCACCACCAGCAGTTACCAAAGCAACACGGTGGTGAAAATTCTACAATCAACACAACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGACATAGGTGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCTTGGAATATAACACAGAAGAAAAAAGGGAAGCAAGGGGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGATTTAGCCGCACTTAAGTATTGGGGAACTTCAACCTTCACCAATTTTCCAATATCTGATTACGGGAAAGATATGGAAATAATGCAGACTATGACCAAAGAGGAGTATTTGGCAACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTGTCGAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTCGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTATCTTGGCACCTATGGCACCCAAGAGGAAGCTGCACGAGCTTATGACTTAGCGGCCATTGAGTACAGAGGGATCAATGCTGTGACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCAGGAGGAGGAAGCAGCCCAGAAGCAAAACTTGAAACACATGCAGTTCTAGAGGGTCAAAAGGTGGCATCCCCATCTAATTATTCTCTAACAGAAGAGTCAAAATCTTCAGTCATTCACAACAGTTTTTTCAGCCTAGATTCTCTGAATTCCCCAGTAGGGCAAGACAATTTTGGAAGCAAACCCTACCCATTCTCAAGCAGTAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCGTTGTTCAGAGAATTGGTTGAGAAGAATTCAAATGTATCTGGAGATGAAGCTGATGATGGGGAAGTCAGAAAAAGTGAACAGCCACAAATAGCTAGTGATGATGATCTGGGTGGAATCTTCTTTGATAGTATTGGTGATATCCCATTTGTTTGTGATCCCAATAGATACAACTTGGAATTGCAAGAAAGAGACCTGCACTCAATATTTTGA


Promoter Sequence:
>Vu_15582::LG4:9657296-9659296(+)
TTAATTTTAGGAGGACAATGACATATTGTCACATTCAGGATACATTCCTATGGCTTAAATAATTATTCTCCATTTTTTAAACTAAAAACCACGTCTTGAAGTATGCGTTGAAAGGTAAATGTACTTTTCTTAATTAATTAAACCAGTCCGTATCAGTAACCCAAATGCAAATAAAATACATATATAAAGATGCCAAGTTTTAAGCTCTTAACAGTTATTTAATCTAAATATATTGTCAGCATGTTTGTGTATTCATAATTAATAAACTTAACAGTTAACAAATGATCGAACATATTAAATTAATAATACAAGTGTACTACAAGAAATTTCGTACCAACTGTACAAGCATATTTAACTAATATACACCAAAGAAATATTATAACAATAAATAAATGACAAGATGAATATTTATTAGCTTTCAGTCATTGGTAGCACCGTAAATTTTAGATAACGTGGTGTAAGCAAATTCTTTTCTGCCTCAAGAAAGATTCCAACTCGACAGTGATGAATCCAAGGGAAACAGTATTATGCACCAAGGCATAAACCTTTTTATATTCAATATATTTATATTCATGCTGTCTTTTTATTGTTAAATAACGTATATAATTGAAGAAAACATTCCTGATCTATCCTGTCAGTTTCAAGTCAAACTTGCATTGTTTAATAATTACTAAATTGTTTGGGTCCTTATACAATCTTCATCTTCCGGGACTATTTTTCCTTTTCGAAAATCATATATGTGACATGTTTGAAAATCACTTAAAAAGTACAAAAATTACGTTTGAGATATAAAAGTTACAATTTGCTAATTTCTAAAAATCAGGTTAGGTATATATCTTTAAGGTCTCCTAAAAACAGAGCAGCCAAACATAATATATGTGACAACTTATAAGATTTAGGTCATGATATTGGTTAACTTAAAAGATGAAAAGCTTTTGTTTTTTTTTTTAATGATCTTCAAATACTATAATGCTTAAAGATAATGTTTTAATTTCTTGTATGAGTTTAGGTACCTTCTATCTTTTATTTATTAAATATTCCCCTTGCCCATAAAAAACATTATAGAACTCCCATGACCCAACATAATTTTAGTAAATCACAAACTCATCCATAAATTACTGTGACATTTCTCTATGTCTACAATTAATAAAACCCAATTTATGAGAAAACTAAAGTCAAATAGTTTAGGAAAGGTATTTTTAAGGGCACGAGTACATGCAATTAAGCATATCATGGTGCTTATTTTCACCACCATATTTTAAGATAGAATTGTGTAGGGTGGGGGAGTGAATTTTAGTATATTCATTATTGTTCCTGAAATAAAAATTAATTTTTATTTCTGTTTTCATACTATGTAAACTTATCCTTATTCTAAAAATATTAATTAATTATTTTTTTCTAAAAAAAATCACAATAAACACCATAAGGAAACAAACACGTTAATGGGTGTACGGTTTCTCACAGAAACAAACACCAATAAGGAAACAATTTGTCTAACCCTACTATTTGGTAAATCCTGGTCAAACTAAAGAAAAATATTAAGCAATTTAGGTTTGTGAAAGCTTAAAAGTATCAGTGAATGATTAACCAAAACCAGAAACTTTTGGCTAGCGAGTCATTGAAAATGTGGGTGTGAATATGAAATGACTTTGAACGAGGAGTTCTTATATTTGTTATATATGGTAGGGTTGATATGAAGAAAGTTCAAGACTGATGGACTTTGAGCTGGCAATAGGACAACACAAACCCGACCGCTACTTTCCCCGTTATTATCGTCCTCCTTGTTTGTAACTACAACATTGTAGCTAACAATAAATACAAAAACATAAAAAGACCAAAATAAGCATGCAAATTATAAGAACAACGCATAACTCACACTCCTCTCATCAACTTAAGCACAGTTGAGAAGGAAAAAGGGTCTACCAAACAATCACAATATATATAAGAAATGGAAATGACGAAACATAACATTATAGAGGTGAGCCTTGGGAAGAGCCAAA


Gene Sequence:
>Vu_15582(+)
ATGTCCATGGCAGAAGGTGAGCTTCAAGCTACACGGTGTGTCAAGAGACGAAGAAGAGAGGTTGCTGCAGCAGTTAGCAGTGGTGACGATAGCCACCACCAGCAGTTACCAAAGCAACACGGTGGTGAAAATTCTACAATCAACACAACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGGTATATAAGAAAGAACTTCCTTGTTCTATAGTTTCAAAGAGCGTTAACTACTATGGTCTTATGTCTAATTTGCTAATTCAAATGAACTGTAAATAGACATAGGTGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCTTGGAATATAACACAGAAGAAAAAAGGGAAGCAAGGTAGAGTTCCTCCTTCTGGTGTTTTCGCATCAACTGCTGCTCTATATATTTCTTACTTTCCTCCTTCACTTGCTTTTCCTTGCTAACATACTAACATGATCCTTTTCATTTGGAACTTCAACTGGAATTGGGATTGGTTGAACAGTTTACCTTGGTGAGTCATTTAATGATAAGAGCCAAGATTTTGGTTTAATTATTCTGTCAATCAAGTTTAAGTTGACATTATTTTATCTTTCAAATATCATAGGGGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGATTTAGCCGCACTTAAGTATTGGGGAACTTCAACCTTCACCAATTTTCCAGTAAGATGATATAGTAACAGATTATATATATTTCATTTAGGTGCGAATATTCATCTAATGCTCTTTATACTTGAAATTTCAACAGATATCTGATTACGGGAAAGATATGGAAATAATGCAGACTATGACCAAAGAGGAGTATTTGGCAACTTTAAGGAGGTAAATACTTATAATTTTGTTCTCTAGGACACCTTGAGAAGGTGTAGGGAAGAAGCTGCAGTCTAATAAGAGATAGAAATAGTAGTATTTAAGTTCAGCAGATAAAGTTATATAGAATTTTAATATTGTACGTAAGTTTAGGTACACTAGGTTGGTTACTTCGTCATGAAAAAATGACTTCTTGACTCTGGTTATTTTAAAATTGATTTTGCAGAAAGAGCAGTGGCTTTTCAAGAGGTGTGTCGAAGTATAGGGGTGTTGCAAGGTGCATATTTCTGATCAATAGGCACAAAAATTGACTTTTGAGTTGTTGCTTTGTGAAGATGAATCAGTAATGAGTGTTGAATGTTTTGCAGGCACCACCACAATGGTCGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTATCTTGGCACCTATGGTAAGTTAAATCTCCACAATTCACCACGGTGTAGTTCACAAACACACGCAAAGCAAAGATATATATATATATATAGAAATTATGCTTCTTTCATTCATTAGCCTCAGCATATTTTGTTGACCAACATATATATACAGGCACCCAAGAGGAAGCTGCACGAGCTTATGACTTAGCGGCCATTGAGTACAGAGGGATCAATGCTGTGACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCAGGAGGAGGAAGCAGCCCAGAAGCAAAACTTGAAACACATGCAGTTCTAGAGGGTCAAAAGGTGGCATCCCCATCTAATTATTCTCTAACAGAAGAGTCAAAATCTTCAGTCATTCACAACAGTTTTTTCAGCCTAGATTCTCTGAATTCCCCAGTAGGGCAAGACAATTTTGGAAGCAAACCCTACCCATTCTCAAGCAGTAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCGTTGTTCAGAGAATTGGTTGAGAAGAATTCAAATGTATCTGGAGATGAAGCTGATGATGGGGAAGTCAGAAAAAGTGAACAGCCACAAATAGCTAGTGATGATGATCTGGGTGGAATCTTCTTTGATAGTATTGGTGATATCCCATTTGTTTGTGATCCCAATAGATACAACTTGGAATTGCAAGAAAGAGACCTGCACTCAATATTTTGA