Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15518	LG4	8796115	8797190	PREDICTED: probable WRKY transcription factor 12	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, shoot system development, shoot system development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plant-type cell wall biogenesis, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, sequence-specific DNA binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/G	8796377	intron_variant
A/T	8796552	missense_variant	p.Asn106Tyr
A/C	8796553	missense_variant	p.Asn106Thr
T/C	8796616	intron_variant
T/A	8796620	intron_variant
T/A	8796622	intron_variant
T/G	8796630	intron_variant
T/A	8796632	intron_variant
C/G	8796633	intron_variant
G/A	8796635	intron_variant
C/G	8796731	intron_variant
G/T	8796759	intron_variant
C/T	8796874	intron_variant
G/T	8797069	stop_gained	p.Gly125*

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15518.1

MEGERAAATNYDLQVSFSNTPQPIHELGFVHYEENQLLGFLSPSSQSQSLNSDVVVSSATTTAATIGFMNHTQLLTKTWNNNDQVETLDPKAVDEENCTGNASEGNNNSWWRSAASEKNKVKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPR*

CDS Sequence:
>Vu_15518.1

Promoter Sequence:
>Vu_15518::LG4:8794115-8796115(+)

CTATGAACAAAAATCAGACATAAAAGGTGTAGAGAAGTTTCAAATACATATATTACAATGAACATGAGTAAAATCAACATCTGAAATAACATTCTCTTGAAAGAGATTATCGCAAGTAAGAACCTTATCTAGAAGCATTCTTGATGATAAGTTAAACTACCTTTGAAAGGGAAAACACTTCCATATTTATCAAACATAGTATTATCTAAAACATAATTAGCTTGGAGTAAATTATGAGCAGGCAAAAAATCAAGAGAAAATTTAATAGAATACTCACAAAGTCTATGATTTCTCCAAAATCATCCATCAAGAGAGTGACACTAAACTTAGAGTACATGTAACATTCACCCCAAACAAAAATTAATTCCTTCTCCAAATGTAATTCCTGACCACCTAGCTTTCTCCTAACATCTCATATAAAAAATTACAATTCCTTATTAGATAAACCATTTAGGATAAGTTTAACTTAAACAGATACTAATGATTGAAAATATGAGCATAATTATAAATAAAACCAATTCATAGTATAAATGAGTGTGAATCTTATCTTATAATGTTTGATAAGATTAATCAAAGTTAAAAATCTTAATTAATGAAATTTGTAGTGTATTAGAGATATTGTTCCATCTAGTATTGAATTATCCACAATAAACCTCATATATTTTATTAAAAATATAACAAAAACCATTCAACAAAAAATATTTTGATTGAAGGATTTTTTTTTTCTACTTTATTTTGTGATTAATTTTATTTTTTATTCAACAAAATAAGACGTCTCATTCTATAGCGATCTATTATATTATAGCAGTTTCTTTTAATATAATTTGCAAGGGTAATTCGTGGTTGCCTATTGTGTCAATCATGTAATTGAAAGCTTAGATGGAGAGATGTTGCCGACCCAATTGACATTTGATAAAATTTAATCTTTCAGAATGACAAGATTTACCGAGAAGAGAGAATATGAGTAGAATTCAACAATGTTGGTCAGTTTTTTCTTCTACATTTTGTTAGAAAAAAAAAAGCACCTCATTAGAAATTTGCTCAAATAATTTTTACACGGAATAAATAGGAACGCATACGAATTAAATTAATTTATTCTCAATCATTCAACATTTAATTGAACTTTTTATTTTATTATCTAGGAAAATAAATTTAATCTGTTATTTTTATATATAATTGAATCGAGTGTGATTGATAAGAATATAAGGAGTGTGCATCTGATTCTGCGATTACATGAATGTCTTCAGGAAGGATTAAACAGTCATTTCATAAAGTGAAGTTTACAGAATAAACAATGAAAAATTTATTAATATATTCGGTTCTATGAAAATTCAGTTTAATTAATATTAATTAATGTGAAGAGTTTAAGGTGAGATGATTTTTTTTGTTATGTACAGATGAGCTATACAGAAGTAGAAAGATGAACTATATTGTAATAAAATAATGACAATATCTTAATTTGATAAATAAGTTTGTATAGAATACATTATGAAGAACCCAGACAAGTCTATATTTAAAGTCATGCGAAAAAGAAAAAATCCATTTAAATATTGTACAAGTTTTAACAAGGGTTTTGTTTGTTTTTTAATTCCTTAAAATATGAGATATATATGGACACAAGTTGAGGCGATTAAATAAGACAGGACATTGGTAATTCGATAATTGAGAGAGAGTCGCTTGAAAAACATTGTGGGACAATGCACGTGTATTCTAATAGAGAGTGTGAGAGTGTGTGTAAAAGAGTAGAATAGAATAGACTACCTTAAAGAAAAGGGAAGGAATAATAATTTCCATAGTAGCAGTTGACCAAGTACAAAACCCTTGTCCTGGCCCTGCTCAATTACCCTTAAATTTCTATGTTCTTTCCAATCACTGGGCATAAGATTTGAGGTATTATGCGAGAAGAAGAGGCATAGTTAGGTATATAGCTAGGAAGCAGACGAATCAAAACACCACTCAGTGAGTCAAATTCAAATTGGAAGCATTCCAAAAGTGGAATA

Gene Sequence:

>Vu_15518(+)

ATGGAAGGAGAGAGAGCTGCTGCTACCAATTATGACCTTCAAGTTTCCTTCTCCAACACCCCACAACCCATACACGAATTGGGTTTTGTTCACTATGAAGAAAACCAGCTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCCTTAAACTCCGATGTAGTTGTTTCTTCTGCCACTACAACTGCTGCAACCATCGGATTCATGAATCACACTCAACTTCTCACCAAAACTTGGAATAACAACGACCAGGTGCTTATTCATTTTCTATTCTACTTTCCAAAATTCATTTCCTTAATTTCAATTAATACTCAATAAACTCGATCTTAGGGTATTATTTTCAGAAGGATTTTTCGCTTACGCTATTGTTTCAGGTCGAAACTCTGGATCCAAAGGCTGTCGATGAAGAAAACTGCACTGGAAACGCTAGTGAAGGAAACAACAACTCTTGGTATATATAACTATTTCTATATATTTATGTCCCTCTTTCCTCTCTTATCTTCCCTTTCTCTCTCTGTCTGTGTGCATGCACGTAGATATTTATTTATATATCCAGTTAAAGAGATATATTCTTTGTCTGAATTCAAGGTTTTAAAAGACAGTTCCAATTTTTTTCCCAACATCGAGATTTTTTGAGTTTTTGTGATAGTATTTTGCAAACAGTTTGGGACTGTGTGCCGCATTTACCCACAAGTTTTAGTTTATGCGATCACATTATATATTTATCTCTACAATTTTCTGCGACATCAAGAACTGAAACGAATCACAACCCTTCTGAATCCTTGACTTCACATGTTCTCTCTCAGACAGATCACTTGTCGATTTTCTTTAATTGTCTTTGTTTTTCTTTCAATTCGGGTATAAAGAATATTTCGAATGAAGTTAATTACGTTATATATTGTTGTGGTAGGTGGAGGAGCGCAGCTTCGGAGAAGAACAAGGTGAAAATAAGGAGGAAGCTAAGAGAACCAAGGTTTTGTTTTCAAACAAGAAGCGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAAAATAGCCTTCATCCGAGGTAA