Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15486 LG4 8511975 8514618 PREDICTED: transcription factor bHLH18-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 8512264 downstream_gene_variant
G/T 8512268 downstream_gene_variant
A/G 8512277 downstream_gene_variant
C/T 8512283 downstream_gene_variant
A/G 8512289 downstream_gene_variant
G/T 8512298 downstream_gene_variant
A/G 8512301 downstream_gene_variant
C/T 8512310 downstream_gene_variant
A/C 8512319 downstream_gene_variant
T/A 8512420 downstream_gene_variant
G/T 8512473 downstream_gene_variant
G/C 8512490 downstream_gene_variant
A/C 8512504 downstream_gene_variant
A/G 8512571 downstream_gene_variant
A/T 8512617 downstream_gene_variant
T/A 8512621 downstream_gene_variant
G/A 8512627 downstream_gene_variant
C/A 8512803 synonymous_variant p.Val174Val
T/C 8512813 missense_variant p.Asp171Gly
C/A 8512887 missense_variant p.Met146Ile
A/C 8512888 missense_variant p.Met146Arg
A/T 8512890 synonymous_variant p.Ile145Ile
C/T 8512895 missense_variant p.Glu144Lys
A/G 8512896 synonymous_variant p.Ser143Ser
C/T 8512897 missense_variant p.Ser143Asn
T/A 8512901 stop_gained p.Lys142*
T/C 8513087 intron_variant
T/G,* 8513102 intron_variant
G/T 8513207 intron_variant
T/C 8513225 intron_variant
G/A 8513291 intron_variant
A/T 8513338 intron_variant
A/G 8513412 intron_variant
C/G 8513416 intron_variant
G/A 8513425 intron_variant
C/T 8513474 intron_variant
G/A 8513491 intron_variant
T/C 8513492 intron_variant
A/T 8513496 intron_variant
G/T 8513515 intron_variant
G/A 8513539 intron_variant
C/T 8513541 intron_variant
T/C 8513546 intron_variant
T/C 8513551 intron_variant
T/C 8513559 intron_variant
T/A 8513567 intron_variant
C/T 8513597 intron_variant
C/A 8513611 intron_variant
G/A 8513615 intron_variant
C/A 8513618 intron_variant
G/A 8513640 intron_variant
G/T,A 8513656 intron_variant
G/A 8513658 intron_variant
C/A 8513666 intron_variant
A/G 8513667 intron_variant
T/C 8513673 intron_variant
G/A 8513677 intron_variant
A/C 8513679 intron_variant
G/T 8513690 intron_variant
G/A 8513696 intron_variant
G/A 8513697 intron_variant
C/T,A 8513706 intron_variant
C/G 8513709 intron_variant
C/A,G 8513724 intron_variant
G/A 8513726 intron_variant
C/T 8513740 intron_variant
C/A 8513747 intron_variant
C/T 8513751 intron_variant
G/A 8513753 intron_variant
G/C 8513772 intron_variant
A/T 8513777 intron_variant
G/A 8513789 intron_variant
G/A 8513791 intron_variant
G/C 8513793 intron_variant
G/T 8513798 intron_variant
T/A 8513800 intron_variant
G/A 8513802 intron_variant
G/A 8513803 intron_variant
A/G,T 8513817 intron_variant
A/G 8513819 intron_variant
G/A 8513832 intron_variant
T/A 8513836 intron_variant
A/T 8513837 intron_variant
T/G 8513838 intron_variant
G/A 8513841 intron_variant
A/T 8513842 intron_variant
G/T 8513844 intron_variant
T/G 8513855 intron_variant
A/T 8513887 intron_variant
C/T 8513897 intron_variant
G/A 8513933 intron_variant
C/T 8513935 intron_variant
C/T 8513984 intron_variant
A/G 8514000 intron_variant
G/A 8514014 intron_variant
T/A,* 8514016 intron_variant
G/T 8514018 intron_variant
C/*,T 8514028 intron_variant
C/T,* 8514030 intron_variant
C/T,* 8514032 intron_variant
C/T,* 8514034 intron_variant
C/A 8514065 intron_variant
G/T 8514072 intron_variant
A/G 8514078 intron_variant
G/A 8514094 intron_variant
A/T 8514099 intron_variant
T/A 8514114 intron_variant
A/G 8514214 intron_variant
T/G 8514401 missense_variant p.Lys73Thr
A/G 8514477 missense_variant p.Phe48Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15486.1
MDDFFNQSHTIHCNEEESPKNMIVFSHESNIPSSSSLQSNLNSKTSSFSAGHVLGFDNPNSEAHQNHSSKSTKQSQNAIPRANRQHHILAERKRREELTKNIVELSAIIPGLKKRDKGSVVLEAVDYVKRLKERVKELENKKSEIMNSRSLTKKPTSVEEELPEMKISVSDREVLIGIFCHNPSNTLVKVLSLLDNLHLSTRCSSVLPFGTSTFKVTIIAKMNDEYSMTIDDLIKEVGGRLLKSHKVVK*


CDS Sequence:
>Vu_15486.1
ATGGATGATTTCTTCAACCAAAGCCACACGATCCATTGCAATGAAGAAGAGTCTCCGAAAAACATGATTGTTTTCTCTCACGAAAGCAATATTCCATCTTCTTCCTCCCTCCAAAGTAACTTGAACTCGAAAACTTCATCATTTTCTGCTGGCCATGTTTTGGGTTTTGATAACCCTAATTCTGAAGCACATCAGAACCACTCTTCCAAAAGCACGAAACAGAGCCAAAACGCGATTCCAAGAGCAAACAGACAACATCACATATTGGCTGAGAGAAAAAGGAGAGAAGAATTGACGAAGAACATCGTAGAACTTTCCGCCATCATTCCTGGGTTAAAAAAGAGAGACAAGGGCAGTGTGGTACTTGAAGCTGTGGATTATGTGAAACGACTTAAAGAACGAGTGAAAGAGCTGGAAAATAAAAAGAGTGAAATTATGAATTCAAGAAGCCTCACCAAGAAACCAACAAGTGTGGAAGAAGAACTTCCAGAAATGAAGATTTCCGTTTCAGACAGGGAAGTGCTTATAGGAATTTTTTGTCACAATCCAAGCAATACTTTAGTCAAAGTGTTGTCGTTGCTCGATAATCTTCATCTTTCTACGAGATGTTCTAGTGTGTTGCCATTTGGAACTTCAACATTTAAGGTCACTATTATTGCTAAGATGAATGACGAATATAGCATGACCATCGATGACCTAATAAAAGAAGTTGGAGGACGCTTATTGAAGTCACACAAGGTGGTAAAGTGA


Promoter Sequence:
>Vu_15486::LG4:8514618-8516618(-)
TCTTCTTCCCGCAAAACCTCTCAGACTCTCGCTCTCATATCTCGCGCTCTCGCTCTCATCTTTGCCTCCCTCCCTCCGATTTCTCCTCTCCACCAAACCCCATCATCAACGCCGCAAGCACCGCCGTTCAACCACGCCGCCGGCCACCACGCGCAAACCCGCAAGCACCGCCGTTCAACCACGCCGCGACCACCATCTTCATCTTCTCACGCCACCCAAATAAGGTTTTTTCTTCCTCCTCGAGCATCGATAGCTTTCTTCTTCCTTCTCCATGCCACCTTTCGCCTCACCGCCATCGGGAGCCACCACCACCTCGTCGTGTGCGACGGCTTCGAGTGCGGCTTCCACCTCGCCTGCGACTGCATCGCCTCTCGAGTGAAGAGCAAGCGGTGGCCGATCCAGATCCAGATCCAGATCCCGTGCCAGTGGTGGAGTCGTTGGCCTAGCATTCACTTGCCGCTTGCCGTCGGGAGCCGCTTCGCGCTCGCCGCTTGCTGTCGGGAGCCGCTTGCCGTTGACGATTTTCAGAAACTGGGAAATGGGGTTTGAGGCTGGGTTTCAAAAGTATGAATCCTTGGTTTCTTTGATTTTTTTTTCCATTTGTTATATGCTCTGTAATGTATCCGAACTATTATTTTCTGATTTTCTGATGTATCTGAACTTTGATGCTTTGTAATGATTTTCGGATTCTATTTTCTGATTTTGTTTCCATTTGTTATATGCTCTGTAATGAACAACATGAATTCTTTTATCCCAGTGGCTTTTGTTATATGCTCTGTAATGTATCTGAACTTTGATCTCTGTAATGAACTTTGATGCTCTATAATGAATCCCAGCAGGTTCAGCAGTATTTTGAATTTTTTTTATTGAATTTTATAAGATACGGTCTCGGTTCAAAGGAGGACCGAGGCAAAAATTGATCTCTTTTTGACTCGGTTCGCAACCGAGGCATTAAACTTATCCTTTTTACCTCGTCTCTATATGCCTCGGTTGCAGAACCGGTGCCTATAAACGAAATTAACCGGTGCCATTTCCGTTTCCTGTACTAGTGATAACTTAAGATAAAGTGTGATTACCACCAATTGGACTGTAATTAGGTCATTGTTAATCAAAGGCTCACTCCAAGATTTATAAATACAGATTTGAGATAAAGAGATAGGTGATTTGCATTTACTACAACATTAAAATTTCAATTGTCAGATATTGAACTAACATTGGCATCAAAACATCTTTTGCAAATACCCTTCAAACAATACTAGCAAACGAATATAATAGATTTGAAACAAAAGATAACATTTCAGTTCTTTAAACTACCACCTGAACATTGGATGTTGAACTCAATCCTAGACCCAAAATACCAATGAGTCTTATAAAAGGATGATTCTAAAATTGTTGTTAAAAAAAATTAGTTATAGTTATTCTATTTTTCAGCTTAAGTAAGAAATGAGTAAAATTCTATCCTATAATTAAATATTGATAACTATTTTGAAAAAAGAAAACTCCACCGACTCAAATTTATAAAATATAATACAAAATAATTTGTTAAAACATAAATATTCAAATTAAAGCTTATAAATAAAATTTATAATACAAGATATAATTTAGTCAAAAATTTGCTATTGACCTTGAAATGTGGAAAACATAGATTAAATGATAGACAATATTAAACCCTATGGAAATCCATTTTATTTCAATTTTTAAAATTTATTCTTTGGTACTTGTACCACTCCCAGCAACTATACCATTTCAGTAACTCTCTTGGTAGTGCTGAAATCCTTAATTAGCCTCTTATCCTAACAATGGAGGATTCATGGCATAGCTTGGTTTCTCAATGGGTAAACATACTCATTATTATATTATAGTTATTGTATTAGGCTACACTTGAAGCCAATTCTTTTCTCACATTATAGTTTTATGAACTAATTTATGAACAGATTAGCATGGTTCATTTCTTACATACATTATTCACATTTTCTTTTTTCATTTGGTAATTATAGGAA


Gene Sequence:
>Vu_15486(-)
ATGGATGATTTCTTCAACCAAAGCCACACGATCCATTGCAATGAAGAAGAGTCTCCGAAAAACATGATTGTTTTCTCTCACGAAAGCAATATTCCATCTTCTTCCTCCCTCCAAAGTAACTTGAACTCGAAAACTTCATCATTTTCTGCTGGCCATGTTTTGGGTTTTGATAACCCTAATTCTGAAGCACATCAGAACCACTCTTCCAAAAGCACGAAACAGAGCCAAAACGCGATTCCAAGAGCAAACAGACAACATCACATATTGGCTGAGAGAAAAAGGAGAGAAGAATTGACGAAGAACATCGTAGAACTTTCCGCCATCATTCCTGGGTTAAAAAAGGTGTGTTCTGTTCCCATTTGAGCTATACTAACTCGACAAAATCCCAAAAAGTCTTTGTTTTTTCAAAAATAATTTCGAGGAATAAAATTTAGGAACACGACATAGTTTATAATATTTCTAAAATACATCCATGAAAATTATTGAAAAATGATATTTTAATATACATAATTTTTTTATTTTTACTTAATATTATTTTCTTATAATCATTTTAGTTATATATATATATATATATATATATATGTGTGTGTGTGTTATGTACCATCCCAAAAATACAGTTTAAAACTATATAAAAGAATAATCACATTAAGTAATTCTTACATTAAAAGAGGAGTATATTTATAGCCGAACGATCTTCCTATACATAACAATACATCACAATGTCATCAACATCAATGTGTGCTTACAAATATTCAAATCATTAAACATAATTAACTTCAAATAATGCTTTACAACACAATATAAATTTTCAAAAACCAACCAAAACACACTGGTAATCGATTACAACAAGCTTGTAATCGCTTACCAGGGTGGTTCTTGCACACTTAAAACACTGGTAATCGATTACCAGTAGCATTTTTGCCTACTACACTGAAGTCGTGCAGGAGGTCATGATTTCAACACTGTGTAATCGATTACCACTATCTTGTAATCGATTACAGGACCCAGAAGTCGTTTTTGGGTGCACGACTTCACCACTGGTCAAATGCACAGTGTGAAATCGTGCAAGCGGAACACGACTTCTTCATTTGAAGTCGTTTTGACCCCTCACGACTTCTCCATTTTAACATTTTGAATTGAATTTGTCTATTCTCGTAATATATGATATATTTTTGTCTATTTTGGTAACAAAGCCATAAGTAGCTTTATGAAGTCAGATTTTTACCCTGATGATTTATACTCATTAAAGTCCAGTTTTTCTAGGTCTAAATTAAAAAAAATTAATAACAAAAGAAAAAAAAGTCAGAGTAATATTTATCAAAATGGGCCCTGCTATCATCAAGAAAATAATAAATGATTTTAAACATAAAGTCTAAACCTACCCCACCTAAATATTGGGCATTTGGAAAAACTACACAAAGTAAATGAGGGAATTCTCAAATCATTTTCAACGTGATAGAAAACCTTTGAGGCACTGTATCGAAAAAGTTATAATAATAATATAAAAAAAATATTTACGTGTTTTCTGGTAACACGGTGTTTGTGCAATCATACATAGCCGACAAGAATGTGGTACTGGAAATTTCTACTACGTGACATTTTTTTGAGTGATTCATGAATTTTAACACGTTTTCAGAGAGACAAGGGCAGTGTGGTACTTGAAGCTGTGGATTATGTGAAACGACTTAAAGAACGAGTGAAAGAGCTGGAAAATAAAAAGAGTGAAATTATGAATTCAAGAAGCCTCACCAAGAAACCAACAAGTGTGGAAGAAGAACTTCCAGAAATGAAGATTTCCGTTTCAGACAGGGAAGTGCTTATAGGAATTTTTTGTCACAATCCAAGCAATACTTTAGTCAAAGTGTTGTCGTTGCTCGATAATCTTCATCTTTCTACGAGATGTTCTAGTGTGTTGCCATTTGGAACTTCAACATTTAAGGTCACTATTATTGCTAAGGTACACAACATTTAATTTTTGAAAGCAACACTGTCTTGTCATGTTTGTTTGTTCACACTTTAAGTTCCCGCTGTTCGCGGACCTTATCCCTGTCTTATATAAAACAAGAAGCATTTAAGACATATATCTTCCCAGTTAAATTGACACATTAAGATGGTAACACGTTGAAGACTTCTTACAATATTCTTCTTTTTCTTTATGATAAACTTTAACCAAAAAGAAAATACTTTAATAAGGTTAAAATTTGTTTTTATTATAAATTTTGATATATTTTAATATTTAAATTTAAATATATATTTAACAGTGGTAATTTTTTTTTTGTATTAAATAATGCTTTGGACTTATATTTAAGTTAGAATGTACCGTCTTAAATGATGTGCCTAATTTAAATATCAGTTTAAAAATTTATTTAACATGTTAAAAAATATTTATACAATTATATTAAAAAAGTTATATTTATTTATTTTTAAAATTTGAAGATTAAGGAAAACTGAAATCTAAATTTACGTTTAATTTTAAAGACTAAAAAAGATATTTAATTATAAAAATAAGTATTTACAATAAAAATGGAATTATTTATATTTGTTATTTGTATTGCAGATGAATGACGAATATAGCATGACCATCGATGACCTAATAAAAGAAGTTGGAGGACGCTTATTGAAGTCACACAAGGTGGTAAAGTGA