Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15470	LG4	8331327	8335226	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plant organ morphogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plant organ morphogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
T/A	8331411	missense_variant	p.Asn663Tyr
A/G	8331414	missense_variant	p.Ser662Pro
T/C	8331483	missense_variant	p.Thr639Ala
A/C	8331909	missense_variant	p.Leu497Val
G/A	8331936	missense_variant	p.Arg488Trp
G/A	8332023	stop_gained	p.Gln459*
G/A	8332170	missense_variant	p.Arg410Cys
G/T	8332550	downstream_gene_variant
T/C	8332779	downstream_gene_variant
A/G	8332825	downstream_gene_variant
C/T	8332872	downstream_gene_variant
A/G	8332894	downstream_gene_variant
A/T	8332923	downstream_gene_variant
A/T	8332924	downstream_gene_variant
G/C	8333096	downstream_gene_variant
T/A	8333101	downstream_gene_variant
A/G	8333104	downstream_gene_variant
T/C	8333200	synonymous_variant	p.Glu330Glu
A/T	8333204	missense_variant	p.Val329Glu
G/T	8333276	downstream_gene_variant
T/A	8333337	downstream_gene_variant
A/T	8333345	downstream_gene_variant
C/G	8333593	missense_variant	p.Gly313Arg
T/A	8333636	missense_variant	p.Arg298Ser
G/C	8333666	downstream_gene_variant
T/C	8333758	downstream_gene_variant
A/G	8333878	downstream_gene_variant
A/C	8333881	downstream_gene_variant
G/A	8333908	downstream_gene_variant
C/A	8333919	downstream_gene_variant
T/C	8334004	missense_variant	p.Tyr276Cys
T/A	8334014	missense_variant	p.Arg273Trp
T/C	8334022	missense_variant	p.Glu270Gly
C/G	8334415	missense_variant	p.Gly217Arg
C/G	8334507	missense_variant	p.Trp186Ser
C/T	8334550	missense_variant	p.Glu172Lys
C/T	8334721	missense_variant	p.Ala115Thr
T/A	8334774	missense_variant	p.Gln97Leu
T/G	8334778	missense_variant	p.Met96Leu
C/T	8334799	missense_variant	p.Glu89Lys
G/A	8334839	downstream_gene_variant
A/G	8334913	downstream_gene_variant
A/G	8335029	synonymous_variant	p.Tyr66Tyr
A/C	8335065	synonymous_variant	p.Thr54Thr
A/T	8335070	missense_variant	p.Ser53Thr
T/G	8335071	missense_variant	p.Glu52Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15470.1

MGSMNLLGFSLSPQEHPSSQDHSQTPPSRFGFNPAGISSTDVAGNCFDLTSESTPHLLNLPSYGIYEAFHRNNDIHNTPQDWKENYNSQNLLLGTSCSDQNMNNNQHQQQQQQPKLENFLGGHSFGEHDQTYGGNSASTDYMFPSQPVATSGGSSTGNSNSIGLSMIKTWLRNQPPPSENNNNESGGNSGSSVQTLSLSMSTGSQSNTSLPVLSANVENGESSSDNKQPPTTAALDTIPTGATESAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELNVEAHRTDQEDHSSILNSHLTQGISNNYAGGTATAHHNWHNGLSFHQPQPCTTMHYPYGQRLWCKQEQHDNSDTSHPLSYPEIHQLQLGNNGTHNFFHANSGLHPIMNMDSASIDNSSSSNSVVYDGYGAGGGYLIPIGTGTVVASDGDHSNIRGSNGFGDNEMKVLGYEGLYGSNDAYHAHARNLYYLSQQQSASVDAVKGSAYDQGSACNTWVPTAIPTLAPRSTSMTLCHGVPPFSLLHE*

CDS Sequence:
>Vu_15470.1

Promoter Sequence:
>Vu_15470::LG4:8335226-8337226(-)

GAAATTTGTATAAGTTAGAAAATGATACTGAGAATATGTATACAGATTCTATAAAAAGTAAAAATTTTTAATATAAAAAAATTTATATAAAAAATACTAATGAAATTTGTATAGTAATTTCATTTATATAAAGAGATTAATAAGAGTAAATTTAAATTAATGGTAACAAAAAATTTGTAATATATTTATCAACATGCATGCAGTAGATTATTGATAATTTTTTCATAATAATTATTATTAATGTTTTAAAACTGATAATAAGTAATTTCATAGTTTTTCAAATAACTATAATAATAATAATTAAAAATAATGTAGATTAATATAATAATTTTTAAAATATATGAACATTTCTGGAAAAAAAAAACTAATAAAAATACAATAAATTATCCAGTTGAATATCTGAGATGCCATTGTCATAAATCATGTTCTTTGTTCTCTATAACCAAATTTTAATTTATGTTACAGATAAACATAACATGATAAGAAAGGATGAAAATGATTTAAAATAGATTTATCCAGAAAAGGAATTAAATAGTACTTAACTTATAATTTGAAAAAAAAGCAAGTTAAGGTTCTGACTTGTGATGGTGATAATAGGTCTGACATGAGGTGACTAATGTCCAAGTGGGCTTGAATAAATGGGTGTGGCGAGGGGCTGCGTGTGGTTTTTTGTCACGCTATTTTGTCAGATAATTATTATTTCAACTTCCCCTACACTACAGGTGTTTACAGCCATGAAAGAGAATGCAACAACCATTCTTCTCCCAGACCACATAATTCAACATCATTTTTAACTACAAAATAACATTTTACAAGGTTCCTCTCACACAACCTTTGTGAAAACACTGCTACATGTCCATATAGATCATCGATATTACTTTATTCTTCTACATGTGACTTTTCTTTCTTAAACATTCTATGTATGGAGTGAACATACATTTGTACTGTTTTTTTAATACACACTGGATTAAAAATAACTCATGCATACAATAAATTTCATACATAATAACTTGATCAGTGTCCGTACACAAATATATACTAAAAAATACATGTTCAATTATGCACCAGACTGATCATTCATGTCCACACGTGTTTATGCATATGAACAATGAGTAGCTTATCTTTGAAAAAACTACAATACTGCAAAATCTAATCTTCAACCTTAGTTACAAACAGTCAAAAAAAATCAAATTAACCTGTCAGAAAAATCATTTTATACAATTTTTATAATGATGATCCTACATAAAATAATAACAAGATATCAGAACTAAAACATTTAACAGTATTTATACACATACTAGCTAGATTTCTTTAATAAAACAAGTTCATTTATGGGTTTCTTAACCATCGATGTCTTTTCCATCACTTTGAAAAAAAAAATAATTATGAAATCAAAGTTCATAATATCTAACTTTTCACCTTACTAAGAAAAGGGTGATATCACATATCACATCAGAAATTGTTTTCATGTGTCACAAGTCATAACTGATGAGAAAAAGTTATTATTTTGCAATGCCGAGAGCAACTAGGGTTGTGTTTGGAGTATTTATTACGAAACGGTTCTCTGAATGTGTTTGTGTGTGGTTATATCTTTTCATTAGCCTTTGAACCGAAGTGGTTCAAAGATTTTCAAAGTGCCCTAGGATATCTCCTACGCGTCTCCTTTCTATTGTATGCGCGTGTGTATGCATATCGTCCAGAAAGAGAAAATTCAGAGTATATAAATATAGTTTAAATATACTATAAATGGTCTCTCATCTCTATGCTATAAATGTTTTTTTTTCAATCTTTGAGCTCTTCAAGAATTTGACCCTTCTTCTTCTCCTCCTTCTGCTTTTCTTCATACCCTTTTCATATAAAAACTATACGCTGTTGCTGCTTCTTCTTCTACATGCAAAACTGCTACTACTTTCATCCTATATATAATCTACTTCTCAAGAGTTCTTTCAAGCTTTTGTGATCTCTTTGTGATATTCAATAACCATTATCACACCACACAC

Gene Sequence:

>Vu_15470(-)

ATGGGGTCTATGAACTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAAACACCACCTTCCCGTTTTGGCTTCAACCCTGCTGGAATCTCAAGCACTGATGTTGCAGGAAACTGTTTTGATCTCACTTCTGAATCAACTCCTCATCTACTCAATCTTCCTTCTTATGGCATATATGAAGCATTTCACAGAAACAATGACATTCACAACACCCCTCAAGGTTTTCACTTCTCTTTCATTACTTTACATATAACATATCTTGCTTTTCTTGGATTTTCCACCAGTGCAAATCTTAAGAAGGATTTATTTTTGGTTAATACTATATATTTGAAAGTGGTTGGTCTTTTGCTGTTCTTTTAATCTTTGCTTCTCATTTCTCAGATTGGAAAGAGAACTACAACAGTCAGAACTTGCTGTTAGGAACTTCATGCAGTGACCAAAACATGAACAACAATCAACATCAACAACAACAACAGCAACCAAAGCTTGAAAACTTTCTGGGAGGACATTCTTTTGGAGAACATGACCAAACCTACGGCGGTAACTCAGCCTCAACAGATTACATGTTTCCGAGTCAGCCAGTGGCCACCAGTGGCGGCAGTAGCACAGGCAATAGTAACTCCATAGGGTTATCCATGATAAAGACATGGCTGAGGAACCAACCGCCACCGTCAGAAAACAACAACAATGAAAGTGGTGGGAACAGTGGAAGCAGTGTGCAGACTCTCTCACTTTCTATGAGTACTGGTTCACAATCCAACACTTCACTTCCTGTTCTCTCTGCAAATGTGGAAAATGGAGAGAGTTCTTCAGATAACAAACAACCACCAACCACTGCTGCACTTGATACCATCCCAACAGGAGCCACTGAATCTGCACCCAGAAAGTCCATTGACACGTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGTTTTTTCTCATTTTATTTACCCTAATAAAAAATCTGTATTACTATATTTTAAATTAACTGTCCCAAATCTTTCATAACTGCTTCAAATCTCAGTTAAAAGGTTACCTCAGTCAGTTTCATTGTTGTTGGAACAAGTTCCCTTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTTACTTTTTATTTTGAAATGATGATGAAATTATTCCGTTCTGTTTTTACTTTATCGAAGGCATAGGTGGACTGGAAGATACGAGGCTCATCTATGGGATAATAGCTGCAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGGTAAATGATCTACCGTGTTCCTCTACAGTTCTATGGTTAATGTTGTCAATGTTTTTCATTTTCTTTCTTTGCCTTTTGAGTCTTTATAACTAACCGACACTGTTAATCTGTGTTCCTCGTCTCGACATCCATTATGGGACAATGACTTTCTTCAACATGATGACCTTTTAGTTTACTTGGGTGAGTAAAAGAATATACACTTCTTATGTTGAATTATCTCTATCTTTTTTCCTTAAAAAGTAAAGAAAAGAACCATAAAATTAGTTATTATTGGTGATCATTTGTCGTCACTACTTTCAGGAGGCTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACCACAACAACAAATTTTCCAGTAAGCTGTCATTTCTTGATTTTGTTTTGCCACTTTTTTTGCTTTTTTTTTCCTGTTTATGTTCACTAAATTAAGGTTGTTGTTTGCACACATTGCTTTATACAAAGTTGGTATCGGTATTAACGAAACAAGTTATGGCATCATGGTACTCGAGGGCACATTGTTTAGTTGGTGTCCCTGTGGGATGAAAAAAGTTTCCTCATTTGATGGGATGTGTCTTTTCCTAGGAGGAACTGTTATTTGTCTGATAATGCAAACTATGTATGTGTACATGATCACTTGATGTAATCTTTTGACATGGAATAATTTATGTCTCCCTCAACAATCAATGCATTTTAGATTAGCCACTATGAGAAAGAGGTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCGTCATTGAGAAGGTATTTGCAAGTGTCTATACTCACCAAATACAACTTTTATTAATTTTTTAAACTATCTTATTCACAATAAAAAATCTCATTGATGCAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGGTATATAGTTGACTATATAGACTCTAATATGTACACAAAAGTCTATAATATATATGTGATCACAATGGTAAATTAAAATTATTAATTTTTTTTTATTTGAAGTATTTGCAATAATTTGGTATTTGAATTTTAACTGGCAATGCTTTGCAAAAATTTGTTAGCCCACTATGTCATTTGTGTTAACCCACTGTGTCATTTGTAATATTGAAGTTATAATATGTATATGAATATGCTATGTTTATATCTTGTGTTAATTTAAATGATATGATTGCAGACACCATCAACATGGTAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGCAACAAGGATCTTTACTTGGGAACATTCAGTAAGTTTATATTTTAGATATTAATATGTTTTGCACCCAAAATCATTTGAAGCAGATATGACAGTCTTTCATCAAATTTGAAGATGCATATACATAGAATAATTTCAGTCATCCGATTTTATTTTTTAAAGGAAGAACTTTGAAAAACTTAATCATAGAGTCTGTTGTGAGAAGCAACTAGATAGACGAAGGTAGGTAAAAAGTGAACATCACCTCGAAGCAACAAAAATGAAGAAATTAAAGACAACATTTATTGCCATTCAGATGACCAAATGTTAATAATGATCTGCAGAAATATTAATTTCATAAAGTAAATGTGCATGTTTGATAACTGACGAAATTAACGCAGTTGCAGTGCATGCATTTGATCCAAAACCTATGAAACTGCATCTATGTTTTTTTACTGATGATGATGATAAAATTTTCAGGCACTCAAGAAGAAGCAGCAGAGGCTTATGATGTTGCGGCCATAAAATTCCGAGGACTGAGTGCCGTTACAAACTTCGACATGAGCAGATACGATGTGAAGAGCATACTTGAGAGCACTACCTTGCCGATTGGTGGTGCCGCCAAGCGTTTGAAGGACATGGAACAGGTGGAACTGAACGTGGAAGCTCATAGAACAGACCAAGAAGATCACAGCAGCATCTTGAACTCTCACCTTACTCAAGGTATCAGTAACAACTATGCAGGAGGAACAGCAACAGCTCATCATAACTGGCACAACGGTCTTTCATTCCACCAACCTCAGCCTTGCACCACCATGCACTACCCTTATGGACAGAGACTATGGTGCAAGCAAGAACAGCACGACAATTCTGATACCTCTCATCCTTTGTCTTATCCTGAGATTCATCAACTACAGCTAGGGAATAACGGCACACACAACTTTTTCCACGCAAATTCCGGCTTGCACCCTATCATGAACATGGATTCTGCTTCCATTGACAATAGCTCTTCGTCTAACTCGGTGGTTTATGATGGTTATGGAGCTGGTGGGGGCTATCTGATACCTATTGGGACTGGTACTGTTGTTGCAAGTGACGGTGATCATAGTAATATAAGAGGAAGTAATGGTTTTGGTGATAATGAGATGAAGGTACTTGGTTATGAAGGTCTTTATGGATCGAATGATGCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCCCAACAACAATCAGCTTCTGTAGATGCAGTGAAGGGTAGTGCATACGATCAAGGCTCTGCATGCAACACTTGGGTTCCAACTGCAATTCCAACTCTTGCACCTAGGTCTACCAGCATGACTCTCTGCCATGGTGTTCCACCCTTCTCGTTATTGCATGAATAG