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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15412 LG4 7747027 7749242 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 7747180 missense_variant p.Leu52Phe
G/A 7747528 missense_variant p.Val168Ile
C/A 7748377 stop_gained p.Cys381*
T/A 7748421 missense_variant p.Phe396Tyr
A/T 7748423 missense_variant p.Ser397Cys
A/T 7748894 upstream_gene_variant
A/G 7749121 missense_variant p.Lys529Arg
C/A 7749149 missense_variant p.Asn538Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15412.1
MEFHPYIYILCIILFLQMFPESANSQQAYLNSTVYDCSENPSAPKGYLCNGLQKSCTSFLVFRSKSPYDNPVSIAYLFGSEASTIASINNISKDDKIPSNKSIIVPVFCSCSGNIYQHITPYTATKNDTYFKLVTEIYQGLTTCQALMGQNYYASDGITVGAELTVPVVCACPTENQTARGVTSLLVYSVKNGDTVKSIGEAYGVDEQSMLEANGLSVPSTADNIIIIYATTPILVPLRGKSCKEDPDSFYCTCSQGTVANGTFMGFQCNESDAESFPTKLVASLGVGLGVGFLCLFLLGYKSYQYIQKKRESIRKENLFRKNGGYLLQEKLSYYGKGEMAKLFKAEELQKATDNYNRSRFLGQGGFGTVYKGMLPDGTIVAVKKSKEIERNQIETLVNEVMILSQINHRNIVKLFGCCLETETPLLVYEFIPNRTLSHHIHRRDNEPSLSWESRLRIACEEDEGQNLIAEFLCVMKENKVYEILDGRVVKEARKDEILAIANLAMRCLRLNGKKRPTMKEVSLELEALKKLQSSLEINHDQEYTTSETVQEITDESMPLFSELDSTSF*


CDS Sequence:
>Vu_15412.1
ATGGAGTTTCATCCTTACATTTACATTCTCTGCATAATTCTGTTCTTACAGATGTTTCCTGAATCTGCTAACTCTCAGCAAGCATACCTCAACAGCACTGTCTATGACTGCTCTGAGAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCCAAATCTCCCTATGACAACCCTGTAAGCATTGCCTACCTTTTTGGCTCTGAAGCATCTACCATAGCCTCAATAAACAACATCTCAAAAGATGATAAGATTCCTTCCAATAAGTCAATCATTGTTCCTGTATTCTGTTCATGTTCTGGAAATATCTACCAGCATATCACACCTTACACTGCCACCAAGAATGACACCTACTTCAAGTTGGTTACAGAAATTTACCAAGGCCTCACCACCTGCCAGGCCCTGATGGGTCAGAATTACTATGCCTCTGATGGCATTACAGTTGGTGCTGAGCTCACAGTTCCAGTAGTATGTGCTTGTCCCACTGAAAATCAGACAGCAAGAGGGGTCACTTCCTTGCTGGTTTACTCAGTGAAAAATGGTGATACTGTTAAGTCCATTGGAGAGGCTTATGGTGTTGACGAACAAAGTATGCTAGAGGCCAACGGGTTGTCAGTGCCGTCAACTGCAGACAACATCATAATCATCTATGCCACAACTCCTATCTTGGTTCCTCTCAGAGGGAAGAGTTGCAAAGAGGACCCTGACAGTTTCTATTGTACTTGCTCCCAGGGAACGGTTGCGAATGGAACCTTCATGGGGTTCCAATGTAATGAATCTGATGCTGAAAGTTTTCCTACCAAATTGGTTGCTTCCTTAGGTGTTGGACTTGGTGTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTATATACAGAAGAAGAGAGAAAGTATCCGAAAGGAAAACCTTTTCAGGAAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCTTATTATGGGAAAGGAGAAATGGCAAAGCTGTTTAAAGCCGAGGAGCTACAGAAAGCAACAGATAACTATAACAGAAGTAGATTTCTTGGTCAGGGTGGCTTTGGCACTGTGTATAAAGGAATGCTACCAGATGGAACCATTGTTGCTGTTAAAAAGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTAGTGAATGAAGTGATGATTCTATCACAGATCAACCACAGGAACATTGTCAAACTCTTTGGCTGTTGTCTTGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTCCCAATAGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGAAGATGAGGGTCAGAATCTGATTGCAGAGTTTCTTTGTGTGATGAAGGAGAACAAAGTTTATGAGATTTTAGATGGCAGGGTTGTTAAGGAAGCAAGGAAAGATGAGATTCTTGCAATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCATTGGAATTAGAAGCATTGAAAAAGCTGCAAAGTTCCTTAGAGATCAACCATGATCAGGAGTATACAACTAGCGAGACAGTTCAAGAAATCACAGATGAAAGCATGCCACTGTTCTCAGAACTGGACTCCACATCCTTTTAG


Promoter Sequence:
>Vu_15412::LG4:7745027-7747027(+)
TGTGGATAACAAAGTCTGCATTTCTCCACAAGAACATCAGTTGAAACTTAGAAATACTCTTAGTTCATAATAGACAAATCCTCATTCATACTTCTCCACTTTGTTGTTGCCTCGTTGAAGTGGCCTTTTGGAATGGGCTATAATAAACTAACGAACATGTTATATATTTTATAATTTTAATTTTTTAACGTATTACTATATGGCAAAGAAAAGAGCCTATTAAAAATTGAGATTTCCATAATTGAAGCTGCAAAAATGGAAGGATGAAGCACGTTGAGCGATAGAAAAATTTCAAAGTCAAAGCTTGAAACATGCAACATAAAGCATGTTGAAAATTTCAAAGATATACAATATCACAATTTGATTCCTCTAGGGATATATTTTAGTGGATAAAATGTGCTCTCAATATTGATTCAAATAAATAAAGGGTTGAGAAACTTGACAAAATCAAACACATAATTAATAAAATTTAAATTAATAAAAATATCAATAACTGATCTTCTAAAAAGTTTCATATTTCATGAAATTTTTCTTACAAATTTGTTATAAAATTTTATAAGAAAAAACTTTTTTTTTATTTCATGACAGATAATTCCTTCATGAATAATTATTTATAAAATTATAAAATTATAAAATTTGTAAGTATTATTTACAAAATTTTCTGTAAAAGATGTTTTATGCATAATATTTTGTACAATAACTAAAAACAATTTTTATAAATTATTATTCATAACAAAATTTATAAGTATTTTCTTGGAAAAAAATTTCAAAAGAAAATTAGTAAAAATATTTTTTTAATAGTGTATTATATGTGTCGACTAATACGAATCAATCAAATATCATAATCGATGGTACAATTAGATCGACTTTAGTCAAAAGCTTATGTATAAAACTAAAAATAAGTCAAAGATATACTTATTGAAACTTTTTACAATACATTTATTACAACATCAATCGCATCATAATATTTTTAGTATGTACATCCAATTAATTGGAGAATAAAATATGCCAATAGGATGATGATAGCCAAAGAATAAGTGATAGAAGCATGATTTTAAATGAACATTTCGAGCCTACACCTGAAACAAAACAAGTAGTAATAGATGTTAACTTGTTTCTATCTTCTTTTTTCTATCCTTTGTTTTTCTTAGTTACAAAAACGGGTCTTCTATACTCTATCTGCAATAAGACAAAATACACTTGCGTGTTTGAACCTTTCTTGATATAAGAAAAAAAAAATGCCTAAAACAAACATTCTAACACGAATGAGTACACATCATGAGACCAGTGTTGTCATTTTCGTAAACGATATCTCATAATTAGTTAGAACCCAGATAAGGAAGATTAACATTTCAACGCAATAGATAATCTAAAATTAAATTTAAAGGTGATGGTTATATGACATCTATGCCAAAAAAAAAGTGAACTATAATAACATCAAACTTTGCAAGCATGCAAAAACTGATTGATAAAATTAACTATTCTTATAGATTTGATTTTCTAAAATGTAAAGTGTATAGTTTTAGTTATTGTTTAAAAAATTAGGATTATAATTCTATTATAGCCAAACTATTTAACACGAATTCAAGGTTTAACAACCAGTTTGGTTCTGTTACATGATACTGATCTAGTTTTACATTCCGACAACCTATGCATTTGGCTACTTTGATGATTTTCAAATGCATGACCAAGGCAGCCATTGAAAAGTCAAAGTGCTCAGGAGAAACAAAATTTCGTTACTCAAAGTGTCTGATTATTGACTTTATTTAGAGGGATCAACACTAACTCACACCATGTTATAATTGTTTCTTCAACGTTGAATGATTCAAATCGTTTATTTTGTCTATGAATCCGAGATCCTATGAAGCATGTCTCTACCGCTAAAAAAGTAATAACAAATTTTCCATAAAATAAGAAAGCACAACACGGTATCATGAATGCATTAGATCTTAAACAGCTCTACCAAATTTACTTTGTCTTCTCCAGAGACAATAGGTTCA


Gene Sequence:
>Vu_15412(+)
ATGGAGTTTCATCCTTACATTTACATTCTCTGCATAATTCTGTTCTTACAGATGTTTCCTGAATCTGCTAACTCTCAGCAAGCATACCTCAACAGCACTGTCTATGACTGCTCTGAGAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCCAAATCTCCCTATGACAACCCTGTAAGCATTGCCTACCTTTTTGGCTCTGAAGCATCTACCATAGCCTCAATAAACAACATCTCAAAAGATGATAAGATTCCTTCCAATAAGTCAATCATTGTTCCTGTATTCTGTTCATGTTCTGGAAATATCTACCAGCATATCACACCTTACACTGCCACCAAGAATGACACCTACTTCAAGTTGGTTACAGAAATTTACCAAGGCCTCACCACCTGCCAGGCCCTGATGGGTCAGAATTACTATGCCTCTGATGGCATTACAGTTGGTGCTGAGCTCACAGTTCCAGTAGTATGTGCTTGTCCCACTGAAAATCAGACAGCAAGAGGGGTCACTTCCTTGCTGGTTTACTCAGTGAAAAATGGTGATACTGTTAAGTCCATTGGAGAGGCTTATGGTGTTGACGAACAAAGTATGCTAGAGGCCAACGGGTTGTCAGTGCCGTCAACTGCAGACAACATCATAATCATCTATGCCACAACTCCTATCTTGGTTCCTCTCAGAGGGAAGAGTTGCAAAGAGGACCCTGACAGTTTCTATTGTACTTGCTCCCAGGGAACGGTTGCGAATGGAACCTTCATGGGGTTCCAATGTAATGAATCTGATGCTGAAAGTTTTCCTACCAAATTGGTTGCTTCCTTAGGTATTTTTTCTGAACCGTATATAGAATTAAATCTAGTTTTGTTTGAATTTTGGTTTTTAGCATGGCCGTAGTATGTAGCTGATGCAATTTAATGAGGTAAAACATGGTTTACAGATTGCCAATAATTATTTTCTTTTTGATAGAGCAATTATAGAGATGATTTTGGTAGTTGCTTAAAAATTTTGTCCTTGTTTGTGTATTTGCAGGTGTTGGACTTGGTGTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTATATACAGAAGAAGAGAGAAAGTATCCGAAAGGAAAACCTTTTCAGGAAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCTTATTATGGGAAAGGAGAAATGGCAAAGCTGTTTAAAGCCGAGGAGCTACAGAAAGCAACAGATAACTATAACAGAAGTAGATTTCTTGGTCAGGGTGGCTTTGGCACTGTGTATAAAGGAATGCTACCAGATGGAACCATTGTTGCTGTTAAAAAGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTAGTGAATGAAGTGATGATTCTATCACAGATCAACCACAGGAACATTGTCAAACTCTTTGGCTGTTGTCTTGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTCCCAATAGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTGTTCCCATTTTCCATAGAGACATCAAACCTACCAACATACTTTTAGACAGCAACTTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAGACTCACTTGACCACAGCTGTAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTTCAGTCTAGTCAGTTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAGTGCTGGTAGAACTTATAAGTGGGAGAAAGCCAATTTCCTTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCAGAGTTTCTTTGTGTGATGAAGGAGAACAAAGTTTATGAGATTTTAGATGGCAGGGTTGTTAAGGAAGCAAGGAAAGATGAGATTCTTGCAATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCATTGGAATTAGAAGCATTGAAAAAGCTGCAAAGTTCCTTAGAGATCAACCATGATCAGGAGTATACAACTAGCGAGACAGTTCAAGAAATCACAGATGAAAGCATGCCACTGTTCTCAGAACTGGACTCCACATCCTTTTAG

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