Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_15358	LG4	7109603	7112296	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	N-terminal protein myristoylation, N-terminal protein myristoylation, N-terminal protein myristoylation, N-terminal protein myristoylation, N-terminal protein myristoylation
Cellular Component	is active in	cellular_component
Molecular Function	enables	ADP binding, ADP binding

SNP	Position	Effect	Amino acid change
A/C	7109623	synonymous_variant	p.Thr7Thr
G/C	7109632	missense_variant	p.Glu10Asp
T/A	7109688	missense_variant	p.Leu29His
G/A	7109864	missense_variant	p.Ala88Thr
A/C	7109869	missense_variant	p.Gln89His
C/A	7110480	missense_variant	p.Thr293Lys
A/C	7110506	missense_variant	p.Thr302Pro
C/T	7110624	missense_variant	p.Ala341Val
A/G	7110712	synonymous_variant	p.Arg370Arg
G/T	7110719	missense_variant	p.Gly373Cys
A/G	7110729	missense_variant	p.Asp376Gly
T/A	7110803	missense_variant	p.Cys401Ser
C/T	7111022	synonymous_variant	p.Leu474Leu
C/T	7111169	stop_gained	p.Gln523*
C/T	7111183	synonymous_variant	p.Asn527Asn
C/G	7111196	missense_variant	p.Leu532Val
T/A	7111207	missense_variant	p.Asn535Lys
G/A	7111287	missense_variant	p.Arg562Lys
G/T	7111315	synonymous_variant	p.Gly571Gly
T/C	7111380	missense_variant	p.Leu593Pro
C/A	7111780	missense_variant	p.Asp726Glu
G/A	7111842	missense_variant	p.Ser747Asn
G/A	7111991	missense_variant	p.Gly797Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_15358.1

MMDFVGTVLEIIIRLWDCCAHVRDYEENLSCLRDMASDLLGLWVDVSVKVQMAEDQHLRRLNEVNDWLVKVEAMQREVQAIQQRVAHAQETRSRCLTNFPTNFRMGRIVSRKIGEIRELIDKGHFDVVAREMPHAVVDEIPLEVTIGLESSFDELSECFDDNNVGIIGLFGMGGVGKTTLLKKFNNEFLPTKFYDVVIWVVVSKEADVGSVQQSIGNKLNVPVGKWGGKSIDDRAIVLYNFLKRKKFVLLLDDLWERIDLLKLGIPLPDTENGSKVIFTTRSMEVCRSMEANTCIKVECLATNEAFALFREKVGEETLNSHPEIFHLAKIVAKECEGLPLALITVGRSMARKTLPEWKRAARTLKIYPSRFSGMVDYVYCLLEFSYDSLPSASHKSCFLYCSIFPEDYDIRKDELIQLWIGEGLLAEFGDDVYEARIQGEEIIASLKFACLLEDSERENRIKMHDVIRDMALWLACDHGSNTRFVVRDGACSGSVETYNQAKWKEVEKLSMWRHSIQKLSGKQDCSNLLTMLVRNTEITSFPEEIFLTANHLRVLDLSGNKRVRELPSSIGELVQLQHLDLSGTDIQNLPRELQNLKNLRCLLLNYICNRLVFPRNLISSLVSLQVFSKLPWEDQFILPDLGEPEEAVLLKELECLEYLQDISIALFCFSSVQVLLNSPKLQRCIRHLRVLSPFTSTPHIILFSLLTKMQHLEVLSMSVSSPSSLDHVRKKGSPSSQCSITECIPMSSKLTEHGYIVGLRELSLEGCDMLNLNWLTRAQSLQLLRIYNCPSLEEVIGEEFGHSENVFSSLEIVDLDSLPKLRSICSQVLQFPCLKEICVADCPKLIKLPFDSNSARNSLKHINGQKSWWRKLQWEDEATRDHFASRYVPLRKIRKIR*

CDS Sequence:
>Vu_15358.1

ATGATGGACTTCGTAGGCACAGTGTTGGAGATCATAATTCGCTTGTGGGACTGTTGTGCCCACGTCCGTGATTATGAAGAGAACCTTTCTTGTTTGAGGGACATGGCGTCTGACCTTCTAGGCCTTTGGGTTGACGTGAGTGTGAAGGTTCAAATGGCCGAGGACCAGCACCTGAGGCGTCTGAATGAAGTGAATGATTGGTTGGTTAAAGTTGAAGCCATGCAAAGAGAAGTTCAAGCTATTCAGCAGAGAGTTGCTCATGCTCAAGAAACACGTAGCAGATGTTTGACAAATTTTCCAACAAACTTCAGGATGGGAAGGATTGTAAGTAGAAAAATAGGTGAGATTCGTGAACTTATTGATAAAGGGCACTTTGATGTAGTGGCTCGGGAAATGCCACATGCTGTGGTAGATGAAATCCCTCTAGAGGTCACAATAGGTCTAGAATCTAGCTTTGATGAACTTAGTGAATGTTTTGATGATAATAATGTGGGAATTATTGGCTTGTTTGGAATGGGGGGTGTAGGAAAGACAACCCTGCTCAAAAAGTTCAACAATGAGTTTCTTCCCACAAAATTCTATGATGTAGTCATTTGGGTTGTGGTGTCTAAAGAAGCAGATGTAGGGAGTGTTCAACAAAGCATAGGAAACAAATTAAATGTTCCTGTTGGTAAATGGGGTGGTAAGAGCATTGATGACAGAGCTATTGTTTTATACAACTTTTTGAAGAGGAAGAAGTTTGTGTTGCTGCTAGATGATTTATGGGAGCGTATAGATCTTCTGAAGTTGGGGATTCCTCTCCCTGATACAGAAAACGGATCTAAAGTGATATTCACAACAAGGTCCATGGAGGTTTGCAGGAGCATGGAAGCCAACACATGCATCAAAGTAGAATGTTTAGCAACAAATGAAGCATTTGCATTGTTCAGAGAGAAAGTGGGTGAAGAAACTCTCAACTCTCATCCTGAAATATTTCATCTGGCCAAAATTGTGGCCAAGGAGTGTGAGGGACTTCCTTTAGCTCTCATCACAGTTGGAAGATCTATGGCTCGAAAGACTCTCCCTGAATGGAAACGAGCAGCACGAACTTTGAAGATTTATCCATCAAGATTTTCAGGTATGGTTGACTATGTTTATTGTTTGCTAGAGTTTAGCTATGACAGTTTACCAAGTGCCTCGCACAAGTCTTGTTTCTTGTACTGTTCCATCTTCCCTGAGGACTATGATATTAGAAAAGATGAACTCATTCAACTGTGGATTGGGGAAGGTCTTTTAGCTGAATTTGGTGACGATGTCTATGAAGCACGAATCCAAGGAGAGGAAATCATCGCAAGCTTGAAGTTTGCTTGTTTGTTGGAGGACAGTGAGAGAGAAAATAGGATTAAGATGCATGATGTGATCAGAGACATGGCTTTGTGGCTAGCTTGTGATCATGGATCCAATACCAGGTTCGTGGTGAGAGATGGTGCATGCAGTGGTTCAGTTGAAACATATAATCAGGCAAAGTGGAAAGAAGTAGAGAAACTATCAATGTGGCGGCATAGCATTCAGAAACTATCAGGAAAACAAGATTGCTCAAACCTCTTGACAATGCTAGTTAGAAATACCGAGATAACCAGCTTCCCAGAAGAGATCTTTCTGACTGCAAATCATCTTAGAGTGTTGGACCTGTCAGGTAATAAAAGAGTAAGAGAATTACCTTCCAGCATTGGGGAGTTAGTTCAATTGCAGCATTTGGATCTATCAGGTACTGACATACAAAATTTGCCAAGAGAGCTCCAGAACTTGAAAAATTTGAGGTGCCTGCTGCTGAATTATATTTGCAACAGGCTTGTCTTCCCAAGGAATTTGATATCAAGTTTGGTGTCATTGCAAGTGTTTAGCAAATTACCATGGGAAGATCAGTTTATTCTTCCTGACTTGGGGGAACCTGAGGAAGCTGTCTTGTTGAAAGAACTGGAATGCTTGGAATACCTTCAAGACATAAGCATTGCTCTCTTTTGCTTTTCTTCTGTGCAAGTATTGCTGAACTCTCCCAAGTTGCAAAGATGCATTAGACATCTCAGAGTACTTTCTCCATTCACTTCAACGCCACATATTATATTATTCTCACTTTTGACAAAAATGCAACATCTAGAGGTATTATCCATGTCAGTTTCTTCTCCTTCAAGTTTAGACCATGTCAGGAAAAAGGGGTCTCCATCATCACAGTGTTCTATCACAGAGTGCATTCCCATGAGTTCAAAACTTACTGAGCATGGTTACATTGTTGGCCTCCGTGAGTTATCCCTTGAAGGGTGTGACATGTTGAACTTGAATTGGCTCACTCGTGCTCAAAGCCTTCAACTCCTTAGAATATACAATTGTCCCTCCTTGGAAGAAGTCATAGGTGAAGAATTTGGCCATTCAGAAAATGTTTTTTCGAGTCTTGAAATTGTTGATCTAGATTCTTTACCAAAGTTAAGGAGCATATGCTCACAGGTTTTACAATTTCCTTGTCTTAAGGAGATCTGTGTAGCAGATTGTCCAAAGCTGATAAAGCTCCCTTTTGATTCCAATAGTGCAAGGAACAGTCTGAAGCACATTAATGGACAGAAAAGTTGGTGGCGTAAATTGCAGTGGGAAGATGAAGCCACAAGGGATCACTTTGCTTCAAGATATGTACCTTTGCGCAAAATTCGCAAAATACGTTGA

Promoter Sequence:
>Vu_15358::LG4:7107603-7109603(+)

CCTTGCGCTTCCCGGCGAGGGCAAAATGGGAAATTGTGGACGCTAGGAGGAGAAAGAGAAGGAGAGTGTGAAGGCGTTCGAATGTCATTAGGAAGAAGATGAAATGAATGTGAAAGGATTGGAAATAAGCTTATTGGTGAAGAGTGTGGTGTGAGTGAGTTTTGTAAGAAGTGTTGTGTATCATGATTTAGGACTCATCAGAAGAGATGAATAAATTTACTACTAAATAACAGATAATATTAATATAAATCAAATTTGGTACTCAATATTCTTTGTATTTTTTTAAGCTTTTATTTATCTTAGTATATTTTAAAAAAATTGAACTTCAATAATCTGTCTTTAAATTAGAATAATTATGTTAAGTGAATATTTTTTTAGTATGAAAGTGAAAGTGTTTTTAACAGTTATTTTCCATCAAAATGTGAACTAGATGAACTACCAACAATGGTCACCATGAATAAGAAAACTAGAAGAAAAAAATATTTTGCTAAAATTAAAATTCATATACATAAAAGTTTCTTATTTACTATTCAAAAAAATTGTTAGTTTACTATTTAAAAAACTTATCCTTGATATGTTAAAATTAAAATTTATATACAAATAAACTCTTTTATTATGGATCCACAAGATGTAAGATGATATGTTGTTGCTGGGGCAACCAGATATTTTAAACAAACAACAATGCATATTCCAAAGCCATTGTTGAGCTTGGATCAGAATTCGAATTTAGCATTATTATTCATTGCACTAAGAAAATGCTGATCTCAAACAAAATGTTTAGCCTTCTGAGTATACTTTTTTCTGTAGTTAAGCTAAATTGAGATATCTCTAGTTTTTGTAGCAATTCTTGTTTTTTTTTTTCATTTTTATTACTGTAATTAACTTGAACTAATATAAATTTGAATGCAATGAACTTCAACCTATTATTCTTATCTTTCTCATCTGCTTATTCTGGACTCCACAAGTTTCTCATGATATTTGCAGGAGTGACAAAACGAATTCAGAGATAGATTTAAAAGATGGTTGATATTCAGTTAAAAAAATCAAATTTGCAAAATGATTTAAGATGACTGAGAGAAGTTTATATAGTTAATTACAAGAATAGGGTGTGAAATATACTTTGAATGAGATAAGAGATAGAATACTACTGAGTGTCTAATAATAGAATGCCTAAGTCTAAGATAAAATTTTAAGTGTCTAATGGAGAGGAAGTGTATTATTTTTCATATGTAGTCAAATTTATATTACAAAAGTATAGTAGTTGTGTAAAGGTATTTATATTGCTATTTAACTATGAATCATTATAGAAAGATTATTGCTTTTAATAATAACTAATTTAAAGTCATTTTTTAGAATAATTTCCAATTGATTAAAAGTATAAATTACATAAAATGAAAGTTTTAAACTCTTTCTATTTAATTTTGATTAATTTGATGAAGTTAATGATGAAACCAAATGAAAATGTGCATGGAAGTGTCTTATCATTACTGTAATCTGCCTTAATCTAAATGTTTTATTTCTCACTCACACTTAAAAAAACTAGTTGCAAATCTGTGCGATGAATCTCTTGTATGACATGATAGGTGGGAGAAACGATGAGAATGAGGTGGGCTTATCGAGAATTTTTTACTTCTTATGCTATACTCATTGATAATAACAAGCACTAGAATTTGGTGGAAGTGAACTAGAATTCAACGAGCTAATAACCCACCTTTTTGAACCAATGAAAAACATGACCAGGATTTCAAATCCTAGACCACAACGATGGAGCATACTACAATGACATAGTGTTCTTCTTCCTCGTAGAGCCATTGTTATGTCTGTTCGGTTGCTAACACGCCACAGGGTTGTTGTTGGCAGCATATTTTTATTTTGGGATGTCGTAGTATAAAGACAAACAGGAGCAACCTGAATTCCTTGTTCCACTTGTTGTGGTTTCACAAACAATACTCTTTCTGTTCTCTGTCACTTTTCTTTTCTTGAGTTCGATCTATCATCCA

Gene Sequence:

>Vu_15358(+)