Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15292 LG4 5728641 5730100 disease resistance protein RPM1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 5728645 missense_variant p.Pro376Ser
A/C 5728647 missense_variant p.Leu375Arg
A/C 5728650 missense_variant&splice_region_variant p.Phe374Cys
C/G,T 5728657 splice_region_variant&intron_variant
A/T 5728658 splice_region_variant&intron_variant
C/A,T 5728660 splice_region_variant&intron_variant
C/G 5728662 downstream_gene_variant
T/A 5728663 downstream_gene_variant
T/C 5728695 downstream_gene_variant
C/T 5728713 downstream_gene_variant
T/G 5728724 downstream_gene_variant
C/G 5728733 splice_donor_variant&intron_variant
A/T 5728742 synonymous_variant p.Ser370Ser
G/A 5728768 missense_variant p.His362Tyr
C/T 5728772 synonymous_variant p.Leu360Leu
C/A 5728777 missense_variant p.Ala359Ser
T/G 5728778 synonymous_variant p.Pro358Pro
G/T 5728779 missense_variant p.Pro358Gln
T/A 5728785 missense_variant p.Asn356Ile
T/A 5728786 missense_variant p.Asn356Tyr
T/C 5728788 missense_variant p.Glu355Gly
C/G 5728789 missense_variant p.Glu355Gln
A/C 5728791 missense_variant p.Leu354Trp
A/T 5728792 missense_variant p.Leu354Met
C/A 5728797 missense_variant p.Arg352Leu
A/C,* 5728801 missense_variant p.Phe351Val
C/A 5728807 missense_variant p.Gly349Trp
C/T 5728810 missense_variant p.Asp348Asn
G/T 5728814 synonymous_variant p.Ile346Ile
A/C 5728836 missense_variant p.Leu339Arg
C/T 5728851 missense_variant p.Arg334Lys
A/G 5728855 synonymous_variant p.Leu333Leu
A/T 5728856 missense_variant p.Asn332Lys
T/C 5728858 missense_variant p.Asn332Asp
T/C 5728861 missense_variant p.Thr331Ala
A/C 5728868 missense_variant p.Asn328Lys
T/A,G 5728870 missense_variant p.Asn328Tyr
G/C 5728872 missense_variant p.Ala327Gly
T/C 5728880 synonymous_variant p.Ser324Ser
G/C 5728887 missense_variant p.Thr322Arg
G/A 5728894 missense_variant p.Pro320Ser
A/C 5728895 synonymous_variant p.Thr319Thr
A/G 5728904 synonymous_variant p.Ser316Ser
A/G 5728906 missense_variant p.Ser316Pro
T/C 5728909 missense_variant p.Thr315Ala
A/G 5728910 synonymous_variant p.Thr314Thr
A/T 5728921 missense_variant p.Phe311Ile
C/T 5728923 missense_variant p.Gly310Glu
T/C 5728925 synonymous_variant p.Lys309Lys
T/G 5728931 synonymous_variant p.Val307Val
G/C 5728937 synonymous_variant p.Leu305Leu
T/C 5728942 missense_variant p.Asn304Asp
C/A,T 5728958 synonymous_variant p.Gly298Gly
G/C 5728982 missense_variant p.Cys290Trp
C/G 5728988 missense_variant p.Lys288Asn
T/C 5728990 missense_variant p.Lys288Glu
C/T 5729035 missense_variant p.Asp273Asn
A/T 5729036 synonymous_variant p.Pro272Pro
A/T 5729107 missense_variant p.Ser249Thr
T/G 5729113 missense_variant p.Ile247Leu
C/G 5729116 missense_variant p.Glu246Gln
T/G 5729138 synonymous_variant p.Leu238Leu
T/C 5729150 synonymous_variant p.Lys234Lys
C/G 5729191 missense_variant p.Glu221Gln
T/C 5729208 missense_variant p.His215Arg
C/T 5729234 synonymous_variant p.Gly206Gly
T/C 5729251 splice_region_variant&intron_variant
A/C 5729255 splice_region_variant&intron_variant
T/C 5729265 downstream_gene_variant
A/G 5729297 downstream_gene_variant
A/G 5729319 downstream_gene_variant
A/T 5729320 downstream_gene_variant
T/A 5729342 downstream_gene_variant
C/T 5729355 downstream_gene_variant
T/A 5729366 downstream_gene_variant
T/A 5729367 downstream_gene_variant
A/G 5729383 downstream_gene_variant
A/C 5729387 downstream_gene_variant
C/A 5729422 downstream_gene_variant
G/T 5729466 downstream_gene_variant
C/G 5729471 downstream_gene_variant
G/A 5729483 downstream_gene_variant
A/C 5729501 missense_variant p.Phe200Leu
A/G 5729502 missense_variant p.Phe200Ser
T/A 5729504 missense_variant p.Lys199Asn
T/C 5729506 missense_variant p.Lys199Glu
A/C 5729513 missense_variant p.Asp196Glu
C/T 5729515 missense_variant p.Asp196Asn
A/G 5729535 missense_variant p.Leu189Ser
C/A 5729540 missense_variant p.Glu187Asp
T/G 5729549 missense_variant p.Lys184Asn
T/C 5729551 missense_variant p.Lys184Glu
C/A 5729552 missense_variant p.Lys183Asn
T/G,* 5729565 missense_variant p.Glu179Ala
C/T 5729578 missense_variant p.Glu175Lys
T/C 5729593 missense_variant p.Asn170Asp
T/C 5729605 missense_variant p.Arg166Gly
T/A 5729635 missense_variant p.Ile156Phe
C/A,* 5729656 missense_variant p.Asp149Tyr
G/A,C 5729657 missense_variant p.Asn148Lys
T/G,* 5729658 missense_variant p.Asn148Thr
T/A,* 5729659 missense_variant p.Asn148Tyr
G/T 5729664 missense_variant p.Pro146Gln
G/T,* 5729674 missense_variant p.Leu143Ile
C/*,G 5729675 synonymous_variant p.Pro142Pro
G/A,C 5729676 missense_variant p.Pro142Leu
T/C 5729680 missense_variant p.Asn141Asp
A/C 5729681 missense_variant p.Phe140Leu
A/C 5729683 missense_variant p.Phe140Val
T/C 5729685 missense_variant p.Asp139Gly
C/T 5729688 missense_variant p.Gly138Glu
G/A 5729691 missense_variant p.Ala137Val
C/G 5729692 missense_variant p.Ala137Pro
C/A 5729697 missense_variant p.Trp135Leu
A/G 5729699 synonymous_variant p.Ser134Ser
T/G 5729701 missense_variant p.Ser134Arg
T/C 5729703 missense_variant p.Gln133Arg
G/T 5729704 missense_variant p.Gln133Lys
C/T 5729706 missense_variant p.Arg132Lys
C/T 5729708 synonymous_variant p.Gln131Gln
A/T 5729711 missense_variant p.His130Gln
G/A 5729715 missense_variant p.Pro129Leu
C/T,G 5729717 missense_variant p.Gln128His
T/G 5729718 missense_variant p.Gln128Pro
C/A 5729722 missense_variant p.Val127Leu
C/T,* 5729732 synonymous_variant p.Ser123Ser
G/T,* 5729733 stop_gained p.Ser123*
A/G 5729737 missense_variant p.Ser122Pro
T/G,C 5729739 missense_variant p.His121Arg
G/C,A 5729740 missense_variant p.His121Tyr
G/A 5729742 missense_variant p.Ser120Phe
A/C 5729743 missense_variant p.Ser120Ala
T/G 5729748 missense_variant p.Lys118Thr
G/C 5729780 missense_variant p.Asp107Glu
C/A 5729815 missense_variant p.Ala96Ser
C/G 5729868 missense_variant p.Arg78Pro
C/G 5729879 missense_variant p.Gln74His
T/C 5729886 missense_variant p.His72Arg
T/G 5729907 missense_variant p.Lys65Thr
C/A 5729912 synonymous_variant p.Leu63Leu
G/C 5729914 missense_variant p.Leu63Val
G/C 5729963 missense_variant p.Asn46Lys
T/C 5729985 missense_variant p.Glu39Gly
A/G 5729989 synonymous_variant p.Leu38Leu
C/T 5729998 missense_variant p.Asp35Asn
C/G 5730042 missense_variant p.Arg20Thr
C/G 5730044 synonymous_variant p.Thr19Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15292.1
MSIRTNKMKAVAVLMKQLTRARNKFHEKGRDESFDKKLEKLRLDLNRIKDVFVEVKKNEEKLLDKLAEVYGHLQRLDRKKLDEDMEGICKRIRDSAHNLLPTLVFDDSYKEEDDRGAKISHSSKQLVQPHQRQSWTAGDFNPLDNPFNDFLLRLLIFPENAIIRKRIAINLWIAEGLIENTEKKTAEELGEDVVHDLLKFKVLQLGRWQDSALHHIEVGSEEFLKELIKLKRLKYLSLRGISRIFEIPSSVAKLESLLILDLKACHNLETLPDDISSMKSLTHLIMSKCCLLEGMPKGIEKLTNLQVLKGFLITTSEKTPCTISDLANNLTNLRRLSILIGSEAVIRDGEFRSLENFPALKHLKISWSVSDPRISS*


CDS Sequence:
>Vu_15292.1
ATGTCGATTCGAACAAACAAGATGAAAGCAGTAGCCGTGTTGATGAAGCAGTTGACGAGAGCAAGGAACAAATTCCATGAAAAGGGAAGAGATGAATCATTTGATAAGAAATTGGAGAAGTTGAGGTTGGATCTGAACAGAATAAAGGATGTGTTTGTGGAAGTGAAGAAGAATGAAGAAAAACTGCTGGACAAATTAGCAGAGGTGTATGGCCATCTTCAGAGGTTAGACCGTAAGAAGCTGGATGAAGACATGGAGGGCATTTGCAAGAGGATTAGAGATTCCGCTCACAATTTGCTCCCAACGCTTGTTTTTGACGACTCATATAAGGAGGAGGATGACAGGGGTGCCAAAATATCTCACTCGTCGAAACAATTGGTGCAGCCCCATCAGAGGCAGAGTTGGACTGCGGGAGATTTTAACCCGCTAGACAATCCATTCAACGATTTCTTGTTGCGTCTCCTAATTTTTCCTGAGAACGCTATCATAAGGAAAAGAATTGCAATTAATTTGTGGATTGCAGAGGGTTTGATCGAAAATACAGAGAAGAAAACAGCAGAGGAATTGGGTGAGGATGTGGTTCATGATCTTTTGAAATTTAAGGTGCTTCAACTAGGGCGTTGGCAAGATTCAGCTTTGCATCACATTGAAGTTGGGAGTGAAGAATTCTTGAAAGAGTTGATAAAGTTAAAGCGGTTGAAATATCTGAGTCTACGTGGGATATCAAGAATATTCGAGATTCCATCCTCCGTTGCTAAACTTGAAAGTCTACTAATTCTTGATCTGAAAGCTTGCCATAATTTAGAGACACTACCTGATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCTAAGTGTTGCTTGCTGGAGGGAATGCCAAAGGGGATTGAGAAGCTCACTAATCTCCAAGTACTCAAAGGATTTTTAATAACTACTTCTGAAAAGACTCCTTGCACAATATCAGATCTTGCTAATAATTTGACAAATTTAAGGCGACTCAGCATACTTATTGGAAGTGAGGCCGTGATCAGGGATGGGGAGTTCCGAAGTTTGGAAAATTTTCCAGCACTGAAGCATCTTAAAATATCTTGGAGTGTGTCTGACCCAAGAATTTCTTCCTGA


Promoter Sequence:
>Vu_15292::LG4:5730100-5732100(-)
AATACTTTGTATAAGGATGCACTATGAAAATAGGGGAATTGTCAGACCCTTTGTTTAATGCTTTTTCTTAATTTCTGGGTTTTGAGAGCTTTTGAACACTATAATTAGGACTTTCAGAAAGTTTAATATGGGCTTTCAAATGTTACATAAATGGGGGTTCCAGTTTGGGTTTCCATGGTTTACATTTGCAGCTGTGTTTGTTAGCAGGTGTTATTCCAGATTTTCATTTCTCCAGTAATCCTTTTAACTGTTTACTTAGATGTACCTTACTTACTATGAAGACGTCCCTTTTGATTCTAGAATAATATGCTGTTTCTTCTGCCAATGTATTTGCAGTAGTCACTCTTCGCAGTTAATGTCTTCAATTGGTAGAATAAACGATTTGTACAAACCACTTACTCACATATTGGATTAACATATTTGAAATATGAATCATGAACAAGTGGGATACGGAGAAAGTGCATCTCAAGTTACAAAACGATCGAACAATATATAATAACAATCATAACCATAAACATAACGATGACACAATCATGTAACAGTTATTTCTAAAATCTTTAAAGTTTATATTAAAATTGTAATTGATGACTATAATAATTTGTCTTGATGAACAAAAATGGGAAGTCATTATGCTAATCCGGAGTGTGTGATATGGTTTTAACTGTTCTTCTCTTCAAATTCTTTTAACATTATTCTTGGGAGAAGGTACTTCAGGAGTCACTAACAAAATCCATGTATTTTAAAGCATAACAATTTTACAGATTTTATCTTTGAAGGAAAGTATAAATCAGGGATCGCCAAAGTCGAAGGTACTCAAAGAATGACGTGAAACTTTTGTAGTGTAATTCCTTCCTTCAAATCATAATAAAACTGGAAATTATGATGACATGATTTAGCTTCCCTCCATATAAAGTATACTTTCCTTCAAAACTATCTTTAACTATATGAGGCTGTATTTGAATTGTTTAAAGCATCTTACCTAAGGCTGTATTTGAATTGTTTAAAGCATCTTACCTATTAGAGATTGTTCTATCACATGAGGATTATCTTCCACAATATTTTGTTAACGTTTTCCTTCTCTTGAAATTCCTCCTGGTTTTTGGTGAGATGTATCCTGAGTTCTCTTTTGTTGCTTTTCATAATATATATATATATATATATATATATATATATTTCATTTCTGAAATTGATTAAAATAATTTGTTAACGTCCAGTTTTGGATCATATACTAACTGGGATTGTGCTATTTCCTAAAATCATATTGTTTTGTCAATAGCAGGGTGTAACAGAAAGAATTGGACGAAGTTACCAAGTGGACTGAATACATTCCTACATCTAGCTTTTTCTTGTCCCAACTATTTCAAAGGTTCAACTCCATTTTGTTATTGATATATTAATTACAAATAATAAACTTTTATACGATGCTTCAAATGATGGTTATAACTCCATATAAATCACCTATTCTTATATCCTAAAAGAGTTTAAACTTTCTACTATATTGCATATCCTTTGAATTAAATAATTTTGAGCGTATAATTTATGTTGTTTTATTTGTAGAGAAAGTTTTATTTGAATACATGTTAGCTTATTTATGTTATGTTTTACAGTATTCACCAAACAATGTATTGTATTTGTAATGACTGATTATTCATTCTTGAGGATACTCCTTATAAGCCTGATCTTATGCAGAATACTAAATACTTAAATTTTTCCTAATTGATCAGTGAAAACTATAGTTGGTAAATGCGTGATGTATCATGTTCATCAAGTTTTCTACTGATACACGCTTTTTCTTTTATTGACATCATTTTAAACATCCTAGCATAATTTCCCGAACGTATTTTGCTATTGTAATTATTATTTTCCATTTCTTCTTTTCTTTCCTGTTTTGCCTCTAAAGGTAAGTGTGAGTGTACACATACAGATACAAAAAAAATAAAAGAATTTCTATAGTAAAAGAAATTAGGTGACGTAGTATTTGTGTGTTTGTTTGTAGTAAA


Gene Sequence:
>Vu_15292(-)
ATGTCGATTCGAACAAACAAGATGAAAGCAGTAGCCGTGTTGATGAAGCAGTTGACGAGAGCAAGGAACAAATTCCATGAAAAGGGAAGAGATGAATCATTTGATAAGAAATTGGAGAAGTTGAGGTTGGATCTGAACAGAATAAAGGATGTGTTTGTGGAAGTGAAGAAGAATGAAGAAAAACTGCTGGACAAATTAGCAGAGGTGTATGGCCATCTTCAGAGGTTAGACCGTAAGAAGCTGGATGAAGACATGGAGGGCATTTGCAAGAGGATTAGAGATTCCGCTCACAATTTGCTCCCAACGCTTGTTTTTGACGACTCATATAAGGAGGAGGATGACAGGGGTGCCAAAATATCTCACTCGTCGAAACAATTGGTGCAGCCCCATCAGAGGCAGAGTTGGACTGCGGGAGATTTTAACCCGCTAGACAATCCATTCAACGATTTCTTGTTGCGTCTCCTAATTTTTCCTGAGAACGCTATCATAAGGAAAAGAATTGCAATTAATTTGTGGATTGCAGAGGGTTTGATCGAAAATACAGAGAAGAAAACAGCAGAGGAATTGGGTGAGGATGTGGTTCATGATCTTTTGAAATTTAAGGTGATTGTACGCTACGGTAGTACAAAGGATCCCCATGTCAATAAATTTCGAATTTCTCCTGACATCAAGTTTTATGTTGATCGATATATAAATTTTATTAGACCACCCTGTTTATTGCTTGATAGAAAAAAATTTACAATAGGTGGAATTGATACAAAAGGTGTTACTTTAATTAATTTTTTTAATATTGGTTCAAGTTATCTAAATTTTAAACCGCAATGGGTCACCGATCAATTGAAAGATTTAAAGGTGCTTCAACTAGGGCGTTGGCAAGATTCAGCTTTGCATCACATTGAAGTTGGGAGTGAAGAATTCTTGAAAGAGTTGATAAAGTTAAAGCGGTTGAAATATCTGAGTCTACGTGGGATATCAAGAATATTCGAGATTCCATCCTCCGTTGCTAAACTTGAAAGTCTACTAATTCTTGATCTGAAAGCTTGCCATAATTTAGAGACACTACCTGATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCTAAGTGTTGCTTGCTGGAGGGAATGCCAAAGGGGATTGAGAAGCTCACTAATCTCCAAGTACTCAAAGGATTTTTAATAACTACTTCTGAAAAGACTCCTTGCACAATATCAGATCTTGCTAATAATTTGACAAATTTAAGGCGACTCAGCATACTTATTGGAAGTGAGGCCGTGATCAGGGATGGGGAGTTCCGAAGTTTGGAAAATTTTCCAGCACTGAAGCATCTTAAAATATCTTGGAGTGTGTCTGACCCAAGGTATGCTAAAATTGGTATCCGTTTGCCAGTAAGTTTGAAAAAGTTGCATCTTGAATGTTTTCCTGGAAAGAGTGTTGTAGAATTTCTTCCTGA