People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15291 LG4 5720071 5721776 PREDICTED: disease resistance RPP13-like protein 4
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 5720189 intron_variant
A/C 5721491 missense_variant p.Ser96Ala
A/C 5721495 missense_variant p.Asp94Glu
G/T 5721653 synonymous_variant p.Arg42Arg
T/A 5721671 stop_gained p.Lys36*
T/C 5721674 missense_variant p.Asn35Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15291.1
MSIRTNKMKAVAVLMKQLTTARNKFHEKGRDESFNKKLEKLRLVLNNIKDVFVEVKKNEEKLLDTLAEVYGHLQRLDRKKLDEDMEGICKRIRDSSHNLLPTLVFDDSYKEESYKEESYKEESYKEESYKEESYKEESYKEESYKEEDDRGGEISHSSQQLVRPHQRQSWTAGDFNLLDYLLKACFERLLIFPENAIIRKRIAIDLWIAEGLIENTDNNTAEEWGEDVVHDLLKFKVIVRYGSTNDPLVNKFQIPPDIRSRQLKLYLDGDLKSIRPRPLLLYRKKVTVDEVDTKNVTSFNIFNIGTSYLNFGPQWVTDSFKNIEVLQLGRWQDSPIHHIEVGSEEFLKELIKLKRLKYLSLRGISRIFEIPSSVAKLESLLILDLKACHNLETLPDDISSMKSLTHLIMSDCCLLEGMPKGIEKLTDLQVLKGFLITTSEKTPCTISDLANNLTNLRRLSIRIGSEAVIRDGEFKSLEKFRKLKHLKISWSVSDPRYAKIPIKLPLAKYNWRKTGKYDDKFLTRIARVHTASEVP*


CDS Sequence:
>Vu_15291.1
ATGTCGATTCGAACAAACAAGATGAAAGCAGTAGCCGTGTTGATGAAGCAGTTGACGACAGCAAGGAACAAATTCCATGAAAAGGGAAGAGATGAATCATTTAATAAGAAATTGGAGAAGTTGCGGTTGGTTCTGAACAATATAAAGGATGTGTTTGTGGAAGTGAAGAAGAATGAAGAAAAACTGCTGGACACATTAGCAGAGGTGTATGGCCATCTTCAGAGGTTAGACCGTAAGAAGCTGGATGAAGACATGGAGGGCATTTGCAAGAGGATTAGAGATTCCTCTCACAATTTGCTCCCAACGCTTGTTTTTGACGACTCATATAAGGAGGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAGGAGGATGACAGGGGTGGCGAAATATCTCACTCATCACAACAATTGGTGCGCCCCCATCAAAGGCAGAGTTGGACTGCGGGAGATTTTAACTTGCTAGACTATTTATTAAAAGCTTGCTTCGAGCGTCTCCTAATTTTTCCTGAGAACGCTATCATAAGGAAAAGAATTGCAATTGATTTGTGGATTGCAGAGGGTTTGATCGAAAATACAGACAATAACACAGCAGAGGAATGGGGTGAGGATGTGGTTCATGATCTTTTGAAATTTAAGGTGATTGTACGCTATGGTAGTACAAACGATCCCCTTGTCAATAAATTTCAAATTCCTCCTGACATCCGTAGTCGTCAGTTGAAGTTATATTTAGATGGAGATCTAAAGTCTATTAGACCACGGCCGTTACTGCTTTATAGAAAAAAAGTAACAGTAGATGAAGTTGATACAAAAAATGTTACTTCATTTAATATTTTTAATATTGGCACAAGTTATCTGAATTTTGGACCGCAATGGGTCACCGATTCATTCAAGAATATAGAAGTGCTTCAACTTGGGCGTTGGCAAGATTCACCTATACATCACATTGAAGTTGGGAGTGAAGAATTCTTGAAAGAGTTGATAAAGTTAAAGCGGTTGAAATATCTGAGTCTACGTGGGATATCAAGAATATTCGAGATTCCATCCTCCGTTGCTAAACTTGAAAGTCTACTAATTCTTGATCTGAAAGCTTGCCATAATTTAGAGACACTACCTGATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCCGATTGTTGCTTACTGGAGGGCATGCCAAAGGGGATTGAGAAGCTCACTGATCTCCAAGTCCTCAAGGGATTTTTAATAACTACTTCTGAAAAGACTCCTTGCACAATATCAGATCTTGCTAATAATTTGACAAATTTAAGGCGACTCAGCATACGTATTGGAAGTGAGGCCGTGATCAGGGATGGGGAATTTAAAAGTTTGGAAAAGTTTAGAAAACTGAAGCATCTGAAAATATCTTGGAGTGTGTCTGACCCAAGATATGCTAAAATTCCCATCAAGTTGCCATTAGCTAAATATAACTGGAGGAAGACTGGAAAGTATGACGACAAATTTCTTACTAGGATTGCCCGTGTACATACTGCGTCTGAAGTACCTTAA


Promoter Sequence:
>Vu_15291::LG4:5721776-5723776(-)
TATTTTAATTTCCATAATTAGTAAATCAAAGTTTAACCTTTCAAAACAGCTTTATCTATTGTCTCTTGGGGGTGGGGGTTCATTTGATATGGTTTATGTTTTCTAATTTTTATTGACAGTTATACAATTCAATTATGCAGTTGCTATTACTGATTTGTGATCATGTATATCTTTTTCACAGGTTGATGTGATTGTTGGTCAAGCAGGTGTGAATACTTTGTATAAGGATGCACTATGAAAATAGGGGAATTGTCAGACCCTTTGTTTAATGCTTTTTCTTAATTTCTGGGTTTTGAGAGCTTTTGAACACTATAATTAGGACTTTCAGAAAGTTTAATATGGGCTTTCAAATGTTACATAAATGGGGGTTCCAGTTTGGGTTTCCATGGTTTACATTTGCAGCTGTGTTTGTTAGCAGGTGTTATTCCAGATTTTCATTTCTCCAGTAATCCTTTTAACTGTTTACTTAGATGTACCTTACTTACTATGAAGACGTCCCTTTTGATTCTAGAATAATATGCTGTTTCTTCTGCCAATGTATTTGCAGTAGTCACTCTTCGCAGTTAATGTCTTCAATTGGTAGAATAAACGATTTGTACAAACCACTTACTCACATATTGGATTAACATATTTGAAATATGAATCATGAACAAGTGGGATACGGAGAAAGTGCATCTCAAGTTACAAAACGATCGAACAATATATAATAACAATCATAACCATAAACATAACGATGACACAATCATGTAACAGTTATTTCTAAAATCTTTAAAGTTTATATTAAAATTGTAATTGATGACTATAATAATTTGTCTTGATGAACAAAAATGGGAAGTCATTATGCTAATCCGGAGTGTGTGATATGGTTTTAACTGTTCTTCTCTTCAAATTCTTTTAACATTATTCTTGGGAGAAGGTACAGGAGTCACTAACAAAATCCATGTATTTTAAAGCATAACAATTTTACAGATTTTATCTTTGAAGGAAAGTATAAATCAGGGATCGCCAAAGTCGAAGGTACTCAAAGAATGACGTGAAACTTTTGTAGTGTAATTCCTTCCTTCAAATCATATTAAAACTGGAAATTATGATGACATGATTAAGCTTCCCTCCATATCAACTATACTTTCCTTCAAAACTATCTTTAACTGTATGACATTGGATTGGAGTCGTTTATCCACAAGAGGATTATCTTCCACAATATTTTGTTAACGTTTTCCTTCTCTTGAAATTCCTCCTGGTTTTTGGTGAGATGTATCTTGAGTTCTCTTTTGTTGCTTTTCATAATAGGATTGCGCTATTTCCTAAAATCATATTGTTTTGTCAATAGCAGGGTGTAACAGAAAGAATTGGACGAAGTTACCAAGTGGACTGAATACATTCCTACATCTAGCTTTTTTTTGTCCCAACTATTTCAAAGGTTCAACTCCATTTGGTTATAACTCCATATAAATCACCTATTCTTATATCCTAAAAGAGTTTAAACTTTCTACTATATTGCATATCCTTTGAATTAAATAATTTTGAGCGTATAATTTATGTTGTTTTATTTGTAGAGAAAGTTTTATTTGAATACATGTTAGCTTATTTATGTTATGTTTTACAGTATTCACCAAACAATGTATTGTATTTGTAATGACTGATTATTCATTCTTGAGGATACTCCTTATAAGCCTGATCTTATGCAGAATACTAAATACTTAAATTTTTCCTAATTGATCAGTGAAAACTATAGTTGGTAAATGCCTGAGGTATCATGTTCCATCAAGTTTTCTACTGATGCACGCTTTTTCTTTTATTGACATCATTTTAATCATCCTAGCATAATTTCCCGAACGTATTTTGCTATTGTAATTATTATTTTCTATTTCTTCTTTTCTTTCCTGTTTTGCCTCTAAAGGTAAGTGTGAGTGTACACATACACATACAAAAAAAATAAAAGAATTTCTATAGTAAAAGAAATTAGGTGACGTAGTATCTGTGTGTTTGTTTGTAGTAAA


Gene Sequence:
>Vu_15291(-)
ATGTCGATTCGAACAAACAAGATGAAAGCAGTAGCCGTGTTGATGAAGCAGTTGACGACAGCAAGGAACAAATTCCATGAAAAGGGAAGAGATGAATCATTTAATAAGAAATTGGAGAAGTTGCGGTTGGTTCTGAACAATATAAAGGATGTGTTTGTGGAAGTGAAGAAGAATGAAGAAAAACTGCTGGACACATTAGCAGAGGTGTATGGCCATCTTCAGAGGTTAGACCGTAAGAAGCTGGATGAAGACATGGAGGGCATTTGCAAGAGGATTAGAGATTCCTCTCACAATTTGCTCCCAACGCTTGTTTTTGACGACTCATATAAGGAGGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAAGAGTCATATAAGGAGGAGGATGACAGGGGTGGCGAAATATCTCACTCATCACAACAATTGGTGCGCCCCCATCAAAGGCAGAGTTGGACTGCGGGAGATTTTAACTTGCTAGACTATTTATTAAAAGCTTGCTTCGAGCGTCTCCTAATTTTTCCTGAGAACGCTATCATAAGGAAAAGAATTGCAATTGATTTGTGGATTGCAGAGGGTTTGATCGAAAATACAGACAATAACACAGCAGAGGAATGGGGTGAGGATGTGGTTCATGATCTTTTGAAATTTAAGGTGATTGTACGCTATGGTAGTACAAACGATCCCCTTGTCAATAAATTTCAAATTCCTCCTGACATCCGTAGTCGTCAGTTGAAGTTATATTTAGATGGAGATCTAAAGTCTATTAGACCACGGCCGTTACTGCTTTATAGAAAAAAAGTAACAGTAGATGAAGTTGATACAAAAAATGTTACTTCATTTAATATTTTTAATATTGGCACAAGTTATCTGAATTTTGGACCGCAATGGGTCACCGATTCATTCAAGAATATAGAAGTGCTTCAACTTGGGCGTTGGCAAGATTCACCTATACATCACATTGAAGTTGGGAGTGAAGAATTCTTGAAAGAGTTGATAAAGTTAAAGCGGTTGAAATATCTGAGTCTACGTGGGATATCAAGAATATTCGAGATTCCATCCTCCGTTGCTAAACTTGAAAGTCTACTAATTCTTGATCTGAAAGCTTGCCATAATTTAGAGACACTACCTGATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCCGATTGTTGCTTACTGGAGGGCATGCCAAAGGGGATTGAGAAGCTCACTGATCTCCAAGTCCTCAAGGGATTTTTAATAACTACTTCTGAAAAGACTCCTTGCACAATATCAGATCTTGCTAATAATTTGACAAATTTAAGGCGACTCAGCATACGTATTGGAAGTGAGGCCGTGATCAGGGATGGGGAATTTAAAAGTTTGGAAAAGTTTAGAAAACTGAAGCATCTGAAAATATCTTGGAGTGTGTCTGACCCAAGATATGCTAAAATTCCCATCAAGTTGCCATTAGGTTTGAGAAAGTTGCATTTTGAATGTTTTCCTGGAAAGACTTTAATAGAATGTATTCCACTTTTCCATCTGTCGTTCCGTTATACGTTTCCACCTGAGCTAAATATAACTGGAGGAAGACTGGAAAGTATGACGACAAATTTCTTACTAGGATTGCCCGTGTACATACTGCGTCTGAAGTACCTTAA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1423182