Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15290 LG4 5707626 5709817 PREDICTED: disease resistance protein RGA2-like
Map

Annotations  
category   relationship type   keyword
Cellular Component   located in   nucleus, chloroplast, nucleus
Molecular Function   enables   molecular_function
SNP Position Effect Amino acid change
A/G 5707642 missense_variant p.Val470Ala
T/G 5707668 splice_region_variant&intron_variant
G/C 5707675 intron_variant
C/A 5707678 intron_variant
T/G 5707685 intron_variant
A/G 5707729 intron_variant
G/T 5707732 intron_variant
G/C 5707733 intron_variant
T/G 5707737 intron_variant
A/T 5707739 intron_variant
A/T,C 5707741 intron_variant
C/A 5707746 intron_variant
C/T 5707751 intron_variant
C/G 5707754 intron_variant
G/A 5707801 intron_variant
G/*,T 5707805 intron_variant
C/A 5707807 intron_variant
C/A 5707810 intron_variant
T/A 5707811 intron_variant
C/T 5707816 intron_variant
T/A 5707820 intron_variant
A/G 5707828 intron_variant
T/C 5707831 intron_variant
A/T 5707875 intron_variant
A/T 5707880 intron_variant
C/T 5707883 intron_variant
A/C 5707891 intron_variant
G/A 5707904 intron_variant
T/A 5707907 intron_variant
T/C 5707939 intron_variant
C/T 5707947 intron_variant
T/C 5707957 intron_variant
T/G 5707968 intron_variant
G/C 5707973 intron_variant
C/G 5707977 intron_variant
T/C 5708015 intron_variant
A/C 5708037 intron_variant
A/C 5708038 intron_variant
G/C 5708041 intron_variant
T/C,* 5708045 intron_variant
T/C,* 5708046 intron_variant
C/T 5708312 intron_variant
T/C 5708428 splice_region_variant&intron_variant
A/G 5708430 splice_donor_variant&intron_variant
C/G 5708431 splice_donor_variant&intron_variant
G/A 5708434 missense_variant&splice_region_variant p.Pro462Ser
A/C 5708439 missense_variant p.Leu460Arg
G/T 5708440 missense_variant p.Leu460Ile
T/A 5708449 missense_variant p.Ile457Phe
C/T 5708452 missense_variant p.Glu456Lys
G/A 5708494 missense_variant p.His442Tyr
T/C 5708515 missense_variant p.Lys435Glu
T/C 5708545 missense_variant p.Met425Val
C/T 5708549 synonymous_variant p.Glu423Glu
G/A 5708563 missense_variant p.Arg419Cys
A/T 5708611 missense_variant p.Leu403Ile
G/A 5708620 missense_variant p.Pro400Ser
A/C 5708621 synonymous_variant p.Thr399Thr
A/G 5708630 synonymous_variant p.Ser396Ser
T/C 5708635 missense_variant p.Thr395Ala
G/A 5708640 missense_variant p.Thr393Ile
C/T 5708649 missense_variant p.Gly390Glu
C/A,T 5708684 synonymous_variant p.Gly378Gly
G/C 5708714 missense_variant p.Asp368Glu
G/C 5708751 stop_gained p.Ser356*
T/C 5708755 missense_variant p.Ile355Val
G/A 5708767 synonymous_variant p.Leu351Leu
C/G 5708769 missense_variant p.Arg350Thr
T/C 5708771 synonymous_variant p.Glu349Glu
C/T 5708774 synonymous_variant p.Leu348Leu
T/A 5708786 synonymous_variant p.Ala344Ala
C/T 5708789 synonymous_variant p.Lys343Lys
G/C 5708794 missense_variant p.Leu342Val
T/G 5708806 missense_variant p.Ile338Leu
C/T 5708813 synonymous_variant p.Glu335Glu
C/T 5708821 missense_variant p.Glu333Lys
C/A 5708823 missense_variant p.Gly332Val
G/A 5708825 synonymous_variant p.Ile331Ile
T/C 5708827 missense_variant p.Ile331Val
G/C 5708829 missense_variant p.Ser330Cys
A/G 5708856 missense_variant p.Ile321Thr
T/G 5708884 missense_variant p.Lys312Gln
T/C 5708888 synonymous_variant p.Leu310Leu
T/G 5708892 missense_variant p.Tyr309Ser
A/T 5708893 missense_variant p.Tyr309Asn
C/G 5708917 missense_variant p.Glu301Gln
C/G 5708944 missense_variant p.Ala292Pro
T/C 5708960 synonymous_variant p.Gly286Gly
C/T 5708962 missense_variant p.Gly286Arg
C/T 5708977 missense_variant p.Glu281Lys
A/C 5708981 missense_variant p.Asp279Glu
C/T 5708983 missense_variant p.Asp279Asn
T/C 5708984 synonymous_variant p.Lys278Lys
C/A 5708987 missense_variant p.Leu277Phe
T/C 5708991 missense_variant p.Glu276Gly
C/G 5708992 missense_variant p.Glu276Gln
G/A 5708997 missense_variant p.Thr274Ile
T/A 5709019 missense_variant p.Asn267Tyr
T/G 5709029 synonymous_variant p.Ser263Ser
A/G 5709038 synonymous_variant p.Asn260Asn
G/A 5709061 missense_variant p.His253Tyr
T/G 5709084 missense_variant p.Lys245Thr
T/C 5709092 synonymous_variant p.Lys242Lys
C/G 5709098 missense_variant p.Glu240Asp
T/C 5709112 missense_variant p.Arg236Gly
A/G 5709117 missense_variant p.Val234Ala
G/C 5709127 missense_variant p.Gln231Glu
C/T 5709128 synonymous_variant p.Pro230Pro
G/A 5709156 missense_variant p.Pro221Leu
A/C 5709159 missense_variant p.Leu220Arg
T/C 5709171 missense_variant p.Lys216Arg
G/A 5709181 missense_variant p.Leu213Phe
C/T 5709195 missense_variant p.Ser208Asn
A/G 5709200 synonymous_variant p.Tyr206Tyr
G/T,* 5709203 synonymous_variant p.Pro205Pro
G/T,C 5709204 missense_variant p.Pro205Arg
G/T,C 5709217 missense_variant p.Gln201Glu
A/C 5709218 missense_variant p.Phe200Leu
C/T 5709223 missense_variant p.Glu199Lys
A/C 5709225 missense_variant p.Leu198Trp
C/T,G 5709232 missense_variant p.Asp196His
T/C 5709234 missense_variant p.Asp195Gly
C/G 5709235 missense_variant p.Asp195His
T/C 5709238 missense_variant p.Ile194Val
T/A 5709243 missense_variant p.Asp192Val
C/T 5709244 missense_variant p.Asp192Asn
T/C 5709256 missense_variant p.Asn188Asp
A/T 5709273 missense_variant p.Met182Lys
C/T 5709275 synonymous_variant p.Thr181Thr
C/T 5709292 missense_variant p.Gly176Ser
A/G 5709299 synonymous_variant p.Ile173Ile
C/G 5709343 missense_variant p.Glu159Gln
C/T 5709352 missense_variant p.Val156Ile
C/A 5709369 missense_variant p.Cys150Phe
G/T 5709372 missense_variant p.Ala149Asp
G/A 5709381 missense_variant p.Ser146Leu
C/A 5709385 missense_variant p.Asp145Tyr
A/G 5709393 missense_variant p.Leu142Ser
A/G 5709394 synonymous_variant p.Leu142Leu
C/G 5709406 missense_variant p.Glu138Gln
C/T 5709407 synonymous_variant p.Leu137Leu
G/A 5709433 missense_variant p.Leu129Phe
T/A 5709434 missense_variant p.Gln128His
T/C 5709435 missense_variant p.Gln128Arg
G/A 5709441 missense_variant p.Ser126Leu
T/C 5709443 synonymous_variant p.Glu125Glu
G/A,* 5709450 missense_variant p.Pro123Leu
A/G 5709454 synonymous_variant p.Leu122Leu
G/A 5709455 synonymous_variant p.Pro121Pro
T/A 5709464 missense_variant p.Glu118Asp
C/T,A 5709466 stop_gained p.Glu118*
T/G 5709467 synonymous_variant p.Gly117Gly
C/G 5709468 missense_variant p.Gly117Ala
T/C 5709474 missense_variant p.Lys115Arg
G/C,T 5709478 missense_variant p.His114Asp
T/C 5709487 missense_variant p.Lys111Glu
C/T 5709490 missense_variant p.Glu110Lys
G/T 5709492 missense_variant p.Ser109Tyr
C/G 5709497 missense_variant p.Glu107Asp
C/T 5709499 missense_variant p.Glu107Lys
A/G 5709500 synonymous_variant p.Asp106Asp
G/A 5709507 missense_variant p.Ala104Val
A/T 5709509 missense_variant p.His103Gln
T/A 5709510 missense_variant p.His103Leu
T/G 5709513 missense_variant p.Lys102Thr
A/G 5709518 synonymous_variant p.Leu100Leu
T/G 5709570 missense_variant p.Gln83Pro
G/C 5709571 missense_variant p.Gln83Glu
C/T 5709578 synonymous_variant p.Lys80Lys
C/T 5709582 missense_variant p.Gly79Glu
A/G 5709584 synonymous_variant p.Arg78Arg
A/T 5709599 synonymous_variant p.Leu73Leu
G/A 5709629 synonymous_variant p.Leu63Leu
G/T 5709635 missense_variant p.Asp61Glu
T/A 5709638 missense_variant p.Glu60Asp
A/G 5709666 missense_variant p.Val51Ala
T/A 5709669 missense_variant p.Asp50Val
A/G 5709725 synonymous_variant p.Asp31Asp
C/A 5709735 missense_variant p.Arg28Ile
T/C 5709738 missense_variant p.Glu27Gly
C/G 5709742 missense_variant p.Asp26His
A/C 5709743 missense_variant p.Phe25Leu
T/A 5709747 missense_variant p.Lys24Ile
G/A 5709749 synonymous_variant p.Ser23Ser
C/A 5709757 missense_variant p.Ala21Ser
G/T 5709759 missense_variant p.Thr20Lys
A/G 5709780 missense_variant p.Val13Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15290.1
MSIRTNKMKAVAVLLKQLMTARSKFDERGRDESFDRKLEKLRLDLNKIKDVFVRVKKNEEDLLDILAEVYGHLRKLDRGKLNQDMDDICQRIRDSAHNLLPKHAFDESSEKEDHKGGEIFPLPEESVQLQQKKRWTLEDFNLLDDSLKACLLSLSVFPENAVIRKRNAINLWIGKGLIKNTMEKTAENIGEDVIDDLLEFQVIVPYGSRKDALVKKFQILPDIRHGAFYPQIKVDRLELEQKRVKVGDRYFGHTIRTVFNIGSSYLNFKPQWVTDELKDLEVLQLGRWQDSALHHIEVGSEEFLKELRYLKKLKYLSLRGISNIFELPSSIGELESLIILDLKACHNLERLPNDISSMKSLTHLIMSDCCLLEGMPKGIEKLTNLQVLKGFLTTTSEKTPCTLSDLANNLTNLRRLSIRIGSEAMIRDGEFQSLKNFRKLKHLKISWSVSDPRYAEIPILWPDGDWKREVKLML*


CDS Sequence:
>Vu_15290.1
ATGTCAATTCGAACAAACAAGATGAAAGCAGTAGCTGTGTTGCTGAAGCAGTTGATGACAGCAAGGAGCAAATTTGATGAAAGAGGAAGAGATGAATCATTTGATAGGAAGTTGGAGAAGTTGAGGTTAGATCTGAACAAGATAAAGGATGTGTTTGTGAGGGTGAAGAAGAACGAAGAAGACCTCCTCGACATATTAGCAGAGGTGTATGGCCATCTTCGCAAGTTAGACCGTGGGAAGCTGAATCAAGACATGGATGACATTTGCCAGAGAATAAGAGATTCTGCTCACAATTTGCTTCCAAAGCATGCTTTTGATGAGTCATCTGAGAAGGAGGATCACAAGGGTGGAGAAATATTTCCCTTACCAGAAGAATCGGTGCAACTCCAACAGAAGAAGCGCTGGACTCTGGAAGATTTTAACTTGCTAGACGATTCATTAAAAGCTTGCTTGTTGTCTCTCTCAGTTTTCCCTGAGAACGCTGTCATAAGGAAAAGAAATGCAATTAATTTGTGGATTGGAAAGGGTTTGATTAAAAATACGATGGAGAAAACAGCGGAGAATATTGGTGAGGATGTGATTGATGATCTTTTGGAATTTCAGGTGATTGTACCCTATGGTAGTAGAAAGGATGCCCTTGTCAAAAAATTTCAAATTCTTCCTGACATCCGTCATGGAGCTTTTTATCCGCAAATTAAAGTAGATAGGTTAGAGCTTGAGCAAAAAAGAGTTAAAGTAGGTGATCGGTATTTTGGTCACACTATACGTACTGTTTTTAATATTGGTTCAAGTTACCTAAATTTTAAACCGCAATGGGTCACCGATGAATTGAAAGATTTAGAGGTGCTTCAACTAGGACGTTGGCAAGATTCAGCTTTGCATCACATTGAAGTTGGGAGTGAAGAATTCTTGAAAGAGTTGAGATATTTAAAGAAGTTGAAATATCTGAGTCTTCGTGGGATTTCGAACATATTCGAGCTGCCATCCTCCATCGGTGAACTTGAGAGTCTAATAATTCTTGATCTGAAGGCATGTCATAATTTGGAAAGACTACCAAATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCTGACTGTTGCTTGCTGGAGGGAATGCCAAAGGGGATTGAGAAGCTCACTAATCTCCAAGTACTCAAAGGATTTTTAACAACTACTTCTGAAAAGACTCCTTGCACATTATCAGATCTTGCTAATAATTTGACAAATTTAAGGCGACTCAGCATACGTATTGGAAGTGAGGCCATGATAAGGGATGGGGAGTTCCAAAGTTTGAAAAATTTTAGAAAACTGAAGCATCTGAAAATATCTTGGAGTGTGTCTGACCCAAGGTATGCTGAAATTCCTATCCTTTGGCCAGATGGTGATTGGAAAAGAGAAGTGAAGCTGATGTTGTAA


Promoter Sequence:
>Vu_15290::LG4:5709817-5711817(-)
TTATTCGGTTGTTGAGGACTATTATTGTTCACATCTCAAAATTTGGCTTTCCCGATTCTATAAATAGATAAAGAATATATTTGGTAATTTAAATTTGGAAGTTTTCATTTGTTTAATTTCTTATAAAAATAAATTTATATGTGAAAAGAAAAAAACTCTATTTCTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGATTACGTATGAACATTAGATTTATTATGTTAAATTATGGTTATCATGTACACACAAGTGCTAAAAAAAATTGATGAAGATTACAACTATTAAAATAAATCACGACATGTATTTTCAAAAATATAGGTAGTATAATTCTTGATTTTAGTGCTTCAAGGTTGAAACATTATAAAATCCAATAATAGTAAGTAATAGAAAGAACAAAAGGTTAATAAATAATCTTTATTCTCAAATTAACATAAGAAAAAAATTTAATAAATTCATTTATTACAAACTACTATTATTTAATGGAAACAACAAATTAAAAATAAAATAAATGAATGGTACGCTAATATTTTATATAGAAACAAATAACAATGTTTATACAATAAAAACTCTAAAATAATTTTTTTTAAATAAAAAAACACTATTATATATATATATATATATATATATATATATATATATATTAAACTAAAAAAATTTATATGCAAATAACAATCATAACGATGACACAATCTAAAATCTATGAAGTTTATAATTTGTCTTGATGAAAAAAATGGGAAGTCATTATGTAAATACAGAATGTGTAATATGGTTTTAACTGTTCTTCTCTTTAAGTTCATTTTTCTTGGGAGTCACTAACAAAATATTTGTATTTTAAAGCATAAAAAGTTTATAGATTCTCTCTTTGAAGGGAAAATCAATCGTGGGATCATTAAAGTAGGAGGTACTCAAAGAATAACGTGAAACTTTTGTGGTGTAATTCCTTCCTTCAAATCATACTAAAACTTGAAATTATGATGCCATGAATTAGCTTCCCTCCATATAAAGTATACTTTCCTTCAAAACTATCTTTAACTATATGACATTGTATTTGTATCGTTTAAAGCATCTTAAGTACTTGAGATTGTTCTATTCACAAGAGGATTATCTTCCACAATATTTTGTTAACGTTTTCTTTCTCTTGAAATTCTTGGTGTTTGGTGAAATGTACGTTGAGTTCTCTTTTGTTGTTTTTCATAATATATATGTTTATGTGTATATGTGAGTGTGTTTATTTTCTGAAATTGATTATTATAATATATTAACGTTCAGTTTTCAATCATGTACTAATTTTGATATTTTCTAAAATCATATTTCTTTTGTGAGTAGCAAAATTTAATTGAAAGAGTTGGACGAATTATCTAGTGGACTCAATACATTCTTACATCTAATTTCTTTTGTCCCAATTATTTCAAAGGTTCGACTCCATTTTGTTATTGATATTAATTATAAATAATAAACATTTATATGATGCTTTAAATTATGGTTATAACTCCATATAAATCACCTATTGTTACATCTCATAATTTATGTTGTTTTATTTGTAGAGAAAGTTTGATTTGAATACATGTTAGGTTATTTATATTATGTTTGTATAAATTCACGAGAAATGTATTATATTTAGTAATGATTGATTATTCATTCTTGATGATTGTCATTACAAGTTTGATGTTATGTAGCATACTAAATAACTAAACTTTTTTTCTAATTGTTCAGTGAAAACTGTTGTTTGTTCATGCATGATGTTTTATACTCATGCACGCTTTTTCTCTTATTGACATCATTCTAAAGAGCCTAGCATAATTTTCAGTATTTGATATTGTAATTATTGTTTTCTATTTCTTGTTTTCTTTCTTGTCTTTGCCTCTAAAGGTAGGTGTGAATGCATAAATAGAACGGCAAAAAAGAATTTTTGAAGTAAAAAAATAGGGTGATACTGTGTGTATGTGTTTGTTTGCAGTAAA


Gene Sequence:
>Vu_15290(-)
ATGTCAATTCGAACAAACAAGATGAAAGCAGTAGCTGTGTTGCTGAAGCAGTTGATGACAGCAAGGAGCAAATTTGATGAAAGAGGAAGAGATGAATCATTTGATAGGAAGTTGGAGAAGTTGAGGTTAGATCTGAACAAGATAAAGGATGTGTTTGTGAGGGTGAAGAAGAACGAAGAAGACCTCCTCGACATATTAGCAGAGGTGTATGGCCATCTTCGCAAGTTAGACCGTGGGAAGCTGAATCAAGACATGGATGACATTTGCCAGAGAATAAGAGATTCTGCTCACAATTTGCTTCCAAAGCATGCTTTTGATGAGTCATCTGAGAAGGAGGATCACAAGGGTGGAGAAATATTTCCCTTACCAGAAGAATCGGTGCAACTCCAACAGAAGAAGCGCTGGACTCTGGAAGATTTTAACTTGCTAGACGATTCATTAAAAGCTTGCTTGTTGTCTCTCTCAGTTTTCCCTGAGAACGCTGTCATAAGGAAAAGAAATGCAATTAATTTGTGGATTGGAAAGGGTTTGATTAAAAATACGATGGAGAAAACAGCGGAGAATATTGGTGAGGATGTGATTGATGATCTTTTGGAATTTCAGGTGATTGTACCCTATGGTAGTAGAAAGGATGCCCTTGTCAAAAAATTTCAAATTCTTCCTGACATCCGTCATGGAGCTTTTTATCCGCAAATTAAAGTAGATAGGTTAGAGCTTGAGCAAAAAAGAGTTAAAGTAGGTGATCGGTATTTTGGTCACACTATACGTACTGTTTTTAATATTGGTTCAAGTTACCTAAATTTTAAACCGCAATGGGTCACCGATGAATTGAAAGATTTAGAGGTGCTTCAACTAGGACGTTGGCAAGATTCAGCTTTGCATCACATTGAAGTTGGGAGTGAAGAATTCTTGAAAGAGTTGAGATATTTAAAGAAGTTGAAATATCTGAGTCTTCGTGGGATTTCGAACATATTCGAGCTGCCATCCTCCATCGGTGAACTTGAGAGTCTAATAATTCTTGATCTGAAGGCATGTCATAATTTGGAAAGACTACCAAATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCTGACTGTTGCTTGCTGGAGGGAATGCCAAAGGGGATTGAGAAGCTCACTAATCTCCAAGTACTCAAAGGATTTTTAACAACTACTTCTGAAAAGACTCCTTGCACATTATCAGATCTTGCTAATAATTTGACAAATTTAAGGCGACTCAGCATACGTATTGGAAGTGAGGCCATGATAAGGGATGGGGAGTTCCAAAGTTTGAAAAATTTTAGAAAACTGAAGCATCTGAAAATATCTTGGAGTGTGTCTGACCCAAGGTATGCTGAAATTCCTATCCTTTGGCCAGTAAGTTTGAGAAAGTTGCATCTTGAATGTTTTCCTGGAAAGAGTCTTCTAGAATTTCTTCCTGGTGAAGAGATTTTTCCAGAATATTTACATATACAGAGTGAATATGAAATACTAGAGCTAAATATAACTGGAGGAAAACTGGAAAATATATTTTTCCACCGGATAGGGAGGAATGTGAACATACTGCGTCTAAAGTACCTTAAGCAATTGAATGTCGATATAGACGATTTGAAAATATTCTTTCCTTTCCTACAATATCTAGAAATTAAACAAATCTCAAACCATTCATATATTGAGTGTAGATATGAAAATTTTGCAAATTTTGCAAATTTTGCAAATTCAGCATACGTATTGGAAGTGAGGCCGTGATAAGGAATTGGGAAATCCCAATTTTGCAAATTTTTCCATCACTAAAGCATCTGAAAATATCTTGGAGTGTGTCTGACCCAAGGTATCCTAAAATTGGTATCCATTTGCCAGTGAGTTTGAAAAAGTTGCATCTTGAATGTTTTCCTGGAAAGAGTCTTCTAGAATTTCTTCCTGAAGAGTTTTTTGCAGAATTACTAGAGCTAAATATAACTGGAGGAAAACTGGAAAATATATTTGTAAACAGGATAAGGGGGCGGGCGAAAATACTGCGTCTAAAGTACCTTAAGCAATTGAATGTCGATATAGACGATTTGAAAATATTATTTCCTTTCCTACAATATTTAGAGATTAAACAAATTTCAAACCATTCATACATTGAGCGTACATATGAATAGGATGGTGATTGGAAAAGAGAAGTGAAGCTGATGTTGTAA