Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15286 LG4 5664492 5666726 PREDICTED: transcription repressor MYB6-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of flower development, regulation of flower development, regulation of flower development, regulation of flower development, regulation of flower development
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 5664807 missense_variant p.Ala202Val
C/T 5664945 missense_variant p.Gly156Asp
A/T 5665217 upstream_gene_variant
G/A 5665251 upstream_gene_variant
G/C 5665266 upstream_gene_variant
C/T 5665343 upstream_gene_variant
T/C 5665362 upstream_gene_variant
G/C 5665394 upstream_gene_variant
G/C 5665542 upstream_gene_variant
C/G 5665557 upstream_gene_variant
G/C 5665566 upstream_gene_variant
C/T 5665588 upstream_gene_variant
G/A 5665596 upstream_gene_variant
T/A 5665635 upstream_gene_variant
G/A 5665734 stop_gained p.Gln62*
A/T 5665777 synonymous_variant p.Ser47Ser
T/A 5665801 upstream_gene_variant
T/G 5665806 upstream_gene_variant
T/A 5665978 upstream_gene_variant
G/T 5666049 upstream_gene_variant
A/T 5666356 upstream_gene_variant
C/T 5666357 upstream_gene_variant
A/G 5666532 upstream_gene_variant
C/A 5666539 upstream_gene_variant
T/C 5666601 synonymous_variant p.Pro42Pro
T/C 5666712 synonymous_variant p.Pro5Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15286.1
MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTQEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPRTHEPLVSSPSYPFHKAHASVSTRHMAQWESARLEAEARLSNESTRFSHNTTNPNSDTKTTDSDYFLRIWNSEVGEAFRNVVHHKADDNKITTTSSCPSPLSAGSSSNKCESVGINADLASIAQETTPSNIVKQEFEWRIRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL*


CDS Sequence:
>Vu_15286.1
ATGGGAAGAACACCATGTTGTGACAAGAAGGGTTTGAAGAAGGGACCTTGGACAGCTGAAGAAGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTATCTCAGACCTGACATCAAGCGTGGTCCCTTTACTCAAGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCTTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCTCGAACTCACGAGCCATTGGTCTCATCTCCATCTTACCCCTTCCACAAGGCACATGCATCTGTGTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCAACAAGGTTCAGCCACAACACCACCAATCCTAATTCAGATACCAAAACCACTGACTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTGTTCATCACAAAGCTGATGACAACAAAATCACCACTACCAGCTCCTGCCCCAGTCCCCTCTCTGCAGGATCATCTTCCAACAAGTGTGAGTCAGTTGGAATAAATGCAGATTTGGCTTCCATTGCACAAGAAACCACGCCCTCTAACATTGTGAAACAAGAGTTTGAGTGGAGGATTCGTGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTATGTGTCCACTTTAG


Promoter Sequence:
>Vu_15286::LG4:5666726-5668726(-)
ATTGTGGGTATTCCTGTCCTTGCATATGGAGTTAACCTCCTAATAATCTAAACCTAAAATATATAATTATAAGGTTAAGTATTATGCTTTCATTCAGTTAATTTAATCATCAGTTACTGTAAGAGAAGAACTTATGTTGAATGTGTTTTGGAAGGTGACAGTGAAGAAAGAACTCCATTTTAACTTATAGCCTGTTCGAATAACAAAAACTAACTATTTGTAGAAATATGTAAAAAAGATTTATAAATTAAAAAAAAAAATTACACATAAAGTCATTTTGATTTATAAAACTATTAATTTCTTTCTTTCATATAGAAATATTTATATTTGATGTTGCATGTTCTTTAGTTGAGCTTGAGATGGCCCTATTGTCATTTATGTTCAAATAGGATTTGATGTGATTTCTCTTCTTAAAATAAAAGAACAACTGTAACTTTTCTACTATATTTATAATTTAGTTCTCTTGCAGTTTGGTACACAAATTTTATACAAATGTAACATCACATTATTTTAGGAATCTGACAAGTTCTATGTATTCATTAAATTCAATCATTAAATAAGGTGAACATGTGTAATTGCATGATATATTGTTGAATTATTTTATATACAAATCAACTTCTTTTATTCAATTTGAGAGGAATGTATTGGATTTTACTCCTGAAAACCTTTTTCCAAAATAAATTATATGTTATTCTAAAACAATAATTCACAAAAGGGTATGAGATTATCAACAAGTTATGATTACAGAATATGTAATTTAGGCATATCAATGCTCTCAAATCTCTACATACTCCTTTTATCATCAGTCTTTCTCAGCATCCACTCCTCACCAAAATAATCATCATGTAACTCTAATTGTGATTACTTAAAAAATTATTCAAATGTAAAAAATGGAAGTTATTTATCAGCAGTGTAAATCACAAAATCCACCTTTAGACACCAAATCAAACTTATTGCTTTGACTATGAGGTAAAAGATTTTCAATTTACTGCAACTATATTTTTGTGAGGTAACTGTGACCTCATCCACAATGTTTTTCCACAATTAAACTGCAGTATTAAAGATTTGTGACTAAATTATAACCACAACTTAAAACAATACACAAGTCCTTGATTCATACATAGTTTTGTAAATTAAAGCCTGTGTTAGTGTCACTAAACTCTTTAAGTTCGTATCATGCTATTCTTTATGCTTGATTGAAGTAAACTTTGAACGTAGTAGATAGTGAAGAATTATTAATAGGTGATAATATTATGTTTCTAATTAAGAAAAATAAGGATAAGGTGTTGTTCATGGTCTTGTTTGCAATAAAGAAGAAAGAGAAACATCATGTGTTGTGTTGTAGTAGCATTCATTCATTTCCTGGTGTGTGTTCGTACCCTGCAATGCATGTCATTAATTGGACCCCCATTAATGTTCATGTCCTTCCCTTTAACTGTCTCTGTTGGTTTTTAATCCTGCACTGACTTTTCTGGAAGAGAATCCGCCATTAATGCATTCTATTTTTTCATTTCCACACTCTCCACATTTAATGCTGTCACTGTCATCTTCACTGCAATCTGCTTCTCTCTCACCCCACTTCTGTGCAAAATAAAAACCAAAAAATGCAAAACGCACACCCTCATAAAGACCCTCCACTTTCATTGTTTGTGCAAGTTCTTCGCCTCAATGATGATGCAACTTCTCAATGCTACAGCACACGCATTTATTGCTTGTCTCAGCTGGAAACTCGCTGATCATACTTGCAAGCAAGCCCCCATCCAATAGCAATGCCACCTCAAATCAACTTTTCAATTTTTCATCATCTCCAACGCCTTCACTATTTATTTGTCCTCTCATTGCTTTGAGTGCCTCCAGTTCCTTCTGGGGTGTTTCTGTAGTGTCGAAAATACAGGGAGAACTTGTCTGCATCAAAGGGTTCTCCAAGTTTTCTGCTTGTGATATATATTTGCTTTGTTGATGTGCTGTGGTGTGTGTTTTTGTTGAGAGTTTAAAAGAGA


Gene Sequence:
>Vu_15286(-)
ATGGGAAGAACACCATGTTGTGACAAGAAGGGTTTGAAGAAGGGACCTTGGACAGCTGAAGAAGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTTTTGCTCTTTTGCTGGTACTTTGATTAGTTTTTGTTTCTGTTAAAATCAGCTAAACTGAACTTCAACAACCACTTTAGTCTCAACCTGTCTTTCTAATGGTATAGAGCATAGATATATATATATTTCTTGAAGAAAGCTTTTTTTTATGGTTGCTAAATATATATTAACATAACTTTTTTACTTTAAAACCAGCTTTAATCCTTGTTTCCAAGTGGTTTGAATGGTTTTTTGTTTTGCCCTTTTACACCCTTTTACATTTCTATGGCTGGATTCACATTCTTGGTGTGCTGCGATGATAACATTGCCCATCATATCATATCCCAATTTAACAACTATTGAACAAATGAAGAGAAGCTATACCTCTTGACTCCTTTTTACCTTTTCCTCCACTCTTCTTTTTCAAGTTCTTAAATGTTAAAAGGCAGGAATATAAATAGGCAAGTAATTAAGTGCAAGAGAAATTAAATGCAGTACTTGGAGCATTCTGTATCATGTTTACATTACCCTTTTTCATGTTATGCTACGATCTTATTTTTTTCTCTGTTGTTTTCTGTCTGCATCCTAATCCTGACCAAAACTTGTGCTACCTTTTGACTTCATTATATTTCTATTGCGGATTTAGTAGCCACATGCCCCATGACCCTTTCACTTTGGACACTTTTCCTCGCAAAATCTTTGTTCTTTTTATTTTTTTCATAGCCTTGTGAAACAAGTGTGACAATGCTTAACCATTTATTCTGTTTTTCAACTAAATGACATGATCTCCATGTTTCCATAGGTTATAAGATTATCTGTCATTTTCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTATCTCAGACCTGACATCAAGCGTGGTCCCTTTACTCAAGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTAAACAATTTATTGACCATTATATTTCTGTCTTTTCAATATTTTTTTGAAGATATTCTAGAAAAGGTAAATATTGTTTAATATTTCCTATACAAAGATTAATAATCAAACCGTAAAAATATGATAACAAACAGAAAAACTCTTAAACCAAACATGCAGTAATTTGGATCTTTGTGAGTTTGGAAACCCATTTGGGATGATAATATTGAATGGAAGTTTTTTTACATTTTCAAAGCACAACCTTTTTTGCTTTGCCTCACAAATCTATGATATTGGAATTCCCCACATAACATAAAACAAAGAAACAACTGTGTTAACTTTTCTGTTTTCTGCAAGATCCACTCATTTTGAAACTGTTAATCTCTTTGGCAAAACTTCATAATAAAGCATAGATCTTTTTGGCGAATAACTGTACAAAGTACATAAAATTTTCTGGTTTGTTCTGAATCAGTTCAAATTCTTACTTTGAATGCACTTGACAAGAAATCTTGAACAAATTTTCAGGTGGGCTGCAATAGCTTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCTCGAACTCACGAGCCATTGGTCTCATCTCCATCTTACCCCTTCCACAAGGCACATGCATCTGTGTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCAACAAGGTTCAGCCACAACACCACCAATCCTAATTCAGATACCAAAACCACTGACTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTGTTCATCACAAAGCTGATGACAACAAAATCACCACTACCAGCTCCTGCCCCAGTCCCCTCTCTGCAGGATCATCTTCCAACAAGTGTGAGTCAGTTGGAATAAATGCAGATTTGGCTTCCATTGCACAAGAAACCACGCCCTCTAACATTGTGAAACAAGAGTTTGAGTGGAGGATTCGTGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTATGTGTCCACTTTAG