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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15140 LG4 1615263 1617600 PREDICTED: pollen receptor-like kinase 4
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 1615881 upstream_gene_variant
G/T 1616013 upstream_gene_variant
A/T 1616045 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15140.1
MLFTCFLPSLADNAQVLIHFKTFLSNADALSNWGNQSIGVCSWTGVLCFNQSFHGLRLEHMGLGGTVDVDTLLLLSNLNSFSVINNNFEGPMPELKKLVNLRALFLSNNKFSGEIPDDAFDGMNRLKRVFLAENEFTGHIPTSLAQLPKLFDVDIHGNSFEGNIPEFQQSDFRVFNLSYNKLEGPIPESLSGKDPTSFAGNPGLCGDPLGPCIGSPTPPSDTDQPPNSHTEKENKKKRIILTVVVVVGVIVLASIIALLIIRYRRKKPVLVKDAQPQNVTPFSSESKSIVVTAESKKSEDGGLNFVGNQREGIDLQDLLRASAEVLGSGSFGSTYKAMLLNGPVVVVKRFKHMNGVGKKEFFDHMSRLGKLSHPNLLPLVAFYYGKEEKLLVHDFAENGSLASHLHGRSGVELNWATRLKIIKGVARGLAYLYTEFPDQALPHGHLKSSNVVLDGSFEARLAEYGLVAVVEKSHAQQFMVAYKSPEASQSEKPSEKSDVWCLGILILELLTGKFPASYLRHGKGANEDLAAWVNSIVSEGWNAEVLDKEIPGRGSGEGEMVKLLRIGMGCCEWSLESRWGWKEAVAKIEELKESDDGGEGGSELDHLYSVSTSLDDFSLSQSIS*


CDS Sequence:
>Vu_15140.1
ATGCTCTTCACTTGTTTTTTGCCTTCACTCGCTGACAATGCTCAAGTTCTGATCCACTTCAAAACATTCTTGTCCAATGCTGATGCTTTAAGCAACTGGGGGAACCAATCAATCGGTGTGTGCAGCTGGACTGGTGTACTGTGTTTCAATCAGAGTTTTCATGGCTTGAGATTAGAACACATGGGACTGGGTGGCACTGTTGACGTAGACACGCTGCTTCTGTTGTCCAATTTGAACAGCTTTAGTGTCATTAACAACAACTTCGAGGGTCCAATGCCCGAATTGAAGAAGCTTGTCAATTTAAGGGCGTTGTTTCTGAGCAATAATAAGTTTTCTGGTGAAATCCCAGATGATGCTTTTGATGGCATGAATCGTCTCAAGAGAGTATTCTTGGCTGAAAATGAGTTCACTGGTCATATTCCTACGTCCTTGGCTCAATTGCCTAAACTTTTTGATGTGGACATACATGGAAATAGTTTTGAAGGAAACATACCAGAATTTCAACAGAGTGATTTCAGAGTGTTTAATCTGTCTTACAACAAATTAGAGGGTCCAATTCCAGAAAGCTTAAGCGGCAAGGATCCAACTTCGTTTGCTGGTAATCCAGGTCTATGCGGAGATCCTCTAGGCCCCTGCATTGGAAGCCCCACCCCACCATCGGACACTGATCAACCGCCAAATTCACATACAGAAAAAGAAAACAAGAAAAAACGCATTATCCTAACAGTTGTTGTAGTGGTGGGGGTGATTGTGCTGGCTTCAATAATAGCACTCTTGATCATCCGTTACCGTCGAAAGAAACCCGTGCTGGTCAAAGATGCACAACCCCAGAACGTTACTCCATTTTCTAGCGAGTCCAAATCCATTGTTGTGACAGCTGAATCCAAGAAAAGTGAAGACGGAGGGTTGAACTTCGTCGGGAACCAGAGGGAGGGGATTGACTTGCAAGACCTGCTAAGGGCCTCGGCTGAGGTTCTGGGGAGTGGCAGCTTTGGATCCACTTACAAGGCCATGCTTCTGAACGGGCCAGTGGTGGTGGTGAAGAGATTCAAGCACATGAACGGCGTGGGGAAGAAAGAGTTTTTTGACCACATGAGCAGGCTCGGAAAATTGTCACACCCCAATCTACTCCCTCTCGTTGCATTCTACTACGGAAAAGAAGAGAAGCTTTTGGTTCATGACTTTGCTGAAAATGGCAGTTTGGCCAGTCATCTTCACGGAAGAAGCGGAGTTGAATTGAACTGGGCAACTCGTTTGAAGATCATAAAAGGAGTGGCGAGGGGATTGGCTTATCTGTACACGGAGTTCCCCGACCAAGCTTTACCACACGGTCATCTGAAATCGTCAAACGTTGTACTGGACGGTTCCTTCGAGGCTCGTTTGGCAGAGTACGGACTTGTGGCAGTGGTGGAGAAGAGCCACGCTCAGCAGTTCATGGTGGCTTACAAGTCTCCAGAGGCGAGCCAGTCTGAGAAGCCAAGCGAGAAGAGCGATGTGTGGTGTCTGGGGATTCTGATACTGGAGCTTTTGACGGGGAAGTTCCCTGCGAGTTATCTGAGGCATGGGAAGGGAGCGAACGAGGATTTGGCGGCGTGGGTGAACTCCATAGTGAGCGAAGGGTGGAATGCGGAGGTGCTTGATAAGGAGATTCCTGGGAGAGGGAGTGGAGAGGGTGAGATGGTGAAGCTGTTAAGGATTGGAATGGGATGCTGTGAATGGAGCTTGGAGAGTAGATGGGGTTGGAAGGAAGCTGTGGCAAAGATTGAGGAGTTGAAGGAGAGTGACGATGGTGGTGAAGGTGGAAGTGAACTGGATCATCTCTACTCAGTTTCTACCAGTCTCGACGACTTCTCTCTCTCACAGTCTATTTCATGA


Promoter Sequence:
>Vu_15140::LG4:1613263-1615263(+)
TTGGGAAGAAACGGGAGAGGGTGAAGAAGGCGAAAATGGCGAGGGCTGATTGTGGTAGTTGGAGGAGCTTGTTGAAGCTAAAGGGGTCGAGTTGGGAAGCCGGGATGTGAACGAAGAGAGAAGTGAAGAGAGGGACAGTGATGGTGAGGAACACGAAGACAACATAGGAAACGAGTTTTGTGAGGAAGGAAGAGTGGTCGAGAGCACAACATTGAAGGGTTGTGCGTAGGTTTTGCAGTTCGTGGGTGGCATAAGATGGTTGTCGGAGGAGCAAGGGAATGTTGAGTTGTTGGTGTTTTTCCACGAATGATGGGCTTCTGATGGAGGAACCAATGTCGATGATGATTGTGTTGTTTGATTCTGTGGAGGGCTTCATTGTTGGGTTTCTTTTGAGTAATATGAGACACAGAAACAGAGCAAAGAAAAGTGAAGAAACAGAGCAATGGGTTTTTGAGGGTGTTCTTTACTTACTGTTTATGGAGAAAAATAGAAAGGAAAAAGACAGTAAATATCTTAGTTTAGAGTTTTAAAGAAACTTAATTGAATTATATAGTAAATTGTTTAAAAAAAGTGGCTGTTAAAAACCATTTTGCTAACTAAATATGATTTACAAAGGAATAAAGAAAGAAAAGTATAAACCTTACTTTGCGTTGTGAGAATTCTTGAGGTTACATGTTAAGCTAGGAATAATGAACGTTTCATTTAATAATAAATAAAGTCTTTATTTAAATTTAACCATAATAAAATTATATATATGTAAAGTTAGGGGGGAAATCATGAAATGATAGAGTTTAATTTTATAATAGTATATTAGTATTTAGTTGTTGTCATGCTAGTCTTCAACTGATCATTGTCTACCTGTCAATTTATTTTGCTTTCTTTTTTTTATTGATTGTAACAACAATTTAACTTTCATTATTAAATTCATTTGTGATCAAATCACTTTTTTATATATAAGCAAACAACAATAAACATAATCACAATACTAACATTATTAAAAAAAATCCTTCGAATCTCTTACACACACGACACGTTGTTTCAAATTATTTTTCTCTTCAACACTTCAATAATCCATTTTTATTTTTATTTTTATTTTTATTTTTTACATAACCATGGTTATTTTGAGTATTTGTTCTATTGGGATTTATGGTAATGTACAGGTGTTTTTTTTTTTAATTTTTTCAAAACCTTTTTTAAGATTTTAAGTGAGTATTAGATAAGAATAAATTGGATATGAGTCTTTGAATTGGAAGTAGTGTCTTGACATGAACACATAAGTGATCAAATCCTGATTAAATCATTGTATTAATCCCACATAGGATATCAATGAATCTGAAGAACAATATTTTAGAAAAATACACATATAAAAATTATTAAATGAAATGCTCACAGTTAATTGGTGTAGAGTTTTTTTAATAGAAAAAAACCCAACAACCTCGATGAAGAAATTCATAAGAATAAATCGAATCAAATACGCACGGATTTATTTTATTAAATATATCATAGGTAACAAAAAAATTAAAGAACTTAACTCTCAAAAAAACATAATAAAATAAAATAAGAAAATATGAGTAATTTGAATCTCTTTGCATGTAGTGTAACAAATTCCTATCATAACAAACACACCAGACAAATAGAAGTCACGTAAAATTGTTGTTATGCATATTTTAGAGACGACCAATGTGATAGAAGGCATCACCTTCTCCAATAACAAGAAATGACAGCTTTTAACCAGGCCACAACCAGCATTATAAATAACCATTGAACAAAAGTATCTTTGGAAATGAAGTCCAAACACTTACATTATACATAGGCCGGCCTCACCAGCTCATTCTTTGTGGGAACGATCTTGTCCTTGTCAATGTCACCCCACAAAATGCTTAACATTTCTCATATCCCTTCATCTTCTTTATCCTTTTTCTCCTGCTTCTAAACTCGCCAACAAAAACTTTTTCTCCAAGTTCTTATGGCGCATATGGTAGAGTGCTTCTGTCTTCTCA


Gene Sequence:
>Vu_15140(+)
ATGCTCTTCACTTGTTTTTTGCCTTCACTCGCTGACAATGCTCAAGTTCTGATCCACTTCAAAACATTCTTGTCCAATGCTGATGCTTTAAGCAACTGGGGGAACCAATCAATCGGTGTGTGCAGCTGGACTGGTGTACTGTGTTTCAATCAGAGTTTTCATGGCTTGAGATTAGAACACATGGGACTGGGTGGCACTGTTGACGTAGACACGCTGCTTCTGTTGTCCAATTTGAACAGCTTTAGTGTCATTAACAACAACTTCGAGGGTCCAATGCCCGAATTGAAGAAGCTTGTCAATTTAAGGGCGTTGTTTCTGAGCAATAATAAGTTTTCTGGTGAAATCCCAGATGATGCTTTTGATGGCATGAATCGTCTCAAGAGAGTATTCTTGGCTGAAAATGAGTTCACTGGTCATATTCCTACGTCCTTGGCTCAATTGCCTAAACTTTTTGATGTGGACATACATGGAAATAGTTTTGAAGGAAACATACCAGAATTTCAACAGAGTGATTTCAGAGTGTTTAATCTGTCTTACAACAAATTAGAGGGTCCAATTCCAGAAAGCTTAAGCGGCAAGGATCCAACTTCGTTTGCTGGTAAGTTGACAGCCATCTATGCTCTCTCTCTTTATAGTTTCCACCAACGGAGATTATCTACTTTACTATTTGTTCTCTTTCGTTGTTTGTTGCCGTTTATTTTAGCCTTATTTGGAACATTCGATGACATGTTCACATCAGTGTTAAATGTCGGAATCTTAATCAAGGAAATTTAATTATGGCAACGACTACCTGAAGAAAACTCTTCAGCATTTGAACATAAAATTGAATACAACCGTCCATGATAATGAATTCATGGTCAGCTCCAAGTGTACATTCACCACAGATAGCTTTTACACTAAGGTGCATTATGCTGCTTGAAATTGAATTTTCTGATCTAATTTTTCTAGTGAAACAGGTAATCCAGGTCTATGCGGAGATCCTCTAGGCCCCTGCATTGGAAGCCCCACCCCACCATCGGACACTGATCAACCGCCAAATTCACATACAGAAAAAGAAAACAAGAAAAAACGCATTATCCTAACAGTTGTTGTAGTGGTGGGGGTGATTGTGCTGGCTTCAATAATAGCACTCTTGATCATCCGTTACCGTCGAAAGAAACCCGTGCTGGTCAAAGATGCACAACCCCAGAACGTTACTCCATTTTCTAGCGAGTCCAAATCCATTGTTGTGACAGCTGAATCCAAGAAAAGTGAAGACGGAGGGTTGAACTTCGTCGGGAACCAGAGGGAGGGGATTGACTTGCAAGACCTGCTAAGGGCCTCGGCTGAGGTTCTGGGGAGTGGCAGCTTTGGATCCACTTACAAGGCCATGCTTCTGAACGGGCCAGTGGTGGTGGTGAAGAGATTCAAGCACATGAACGGCGTGGGGAAGAAAGAGTTTTTTGACCACATGAGCAGGCTCGGAAAATTGTCACACCCCAATCTACTCCCTCTCGTTGCATTCTACTACGGAAAAGAAGAGAAGCTTTTGGTTCATGACTTTGCTGAAAATGGCAGTTTGGCCAGTCATCTTCACGGTATGACCCATTCGTTATTTTACTCTTAAAAATCTGAACTTTAGATTCAGTTCCTTAAAATATCCCATACCCATTTGAGTAATGTTGTCTGTAATTGATTTGTAGGAAGAAGCGGAGTTGAATTGAACTGGGCAACTCGTTTGAAGATCATAAAAGGAGTGGCGAGGGGATTGGCTTATCTGTACACGGAGTTCCCCGACCAAGCTTTACCACACGGTCATCTGAAATCGTCAAACGTTGTACTGGACGGTTCCTTCGAGGCTCGTTTGGCAGAGTACGGACTTGTGGCAGTGGTGGAGAAGAGCCACGCTCAGCAGTTCATGGTGGCTTACAAGTCTCCAGAGGCGAGCCAGTCTGAGAAGCCAAGCGAGAAGAGCGATGTGTGGTGTCTGGGGATTCTGATACTGGAGCTTTTGACGGGGAAGTTCCCTGCGAGTTATCTGAGGCATGGGAAGGGAGCGAACGAGGATTTGGCGGCGTGGGTGAACTCCATAGTGAGCGAAGGGTGGAATGCGGAGGTGCTTGATAAGGAGATTCCTGGGAGAGGGAGTGGAGAGGGTGAGATGGTGAAGCTGTTAAGGATTGGAATGGGATGCTGTGAATGGAGCTTGGAGAGTAGATGGGGTTGGAAGGAAGCTGTGGCAAAGATTGAGGAGTTGAAGGAGAGTGACGATGGTGGTGAAGGTGGAAGTGAACTGGATCATCTCTACTCAGTTTCTACCAGTCTCGACGACTTCTCTCTCTCACAGTCTATTTCATGA

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