Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14894 LG3 53959282 53960124 PREDICTED: zinc-finger homeodomain protein 10-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, glucosinolate metabolic process, glucosinolate metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein homodimerization activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
C/A 53959292 missense_variant p.Thr4Asn
C/T 53959299 synonymous_variant p.Asp6Asp
C/G 53959391 missense_variant p.Thr37Ser
C/G 53959403 missense_variant p.Pro41Arg
C/T 53959431 synonymous_variant p.Ser50Ser
C/A 53959511 missense_variant p.Ser77Tyr
C/A 53959517 missense_variant p.Ser79Tyr
C/T 53959674 synonymous_variant p.Pro131Pro
G/A 53959793 missense_variant p.Gly171Asp
G/T,A 53959938 synonymous_variant p.Gly219Gly
G/A 53959946 missense_variant p.Gly222Glu
G/T 53959971 missense_variant p.Glu230Asp
T/C 53960052 synonymous_variant p.Asp257Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14894.1
MDLTNDANDTNSQTQTPQQLTTTTTTNGSLKRHRPTTVPPPSQPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTHQYQNNHSNPRPNFISFYHSPPPPHHGPGLCTSSSPGPSPSPSPLSSPSPPPLSHRFPGSRPVQGLFGQGNEHHLTSFNLSESPSGKKRFRTKFSQEQKEKMQNFSENLGWRMQKGDEGLVQDFCNEIGVSRGVFRVWMHNNKNSSRKRSLEPDEKINVNASDTLNNNPYSTTDDTH*


CDS Sequence:
>Vu_14894.1
ATGGACCTCACCAACGACGCCAACGACACAAATTCTCAAACTCAAACCCCCCAACAGCTCACCACCACCACCACCACCAACGGATCCCTCAAGCGCCACCGCCCCACCACCGTTCCTCCTCCCTCACAACCACCGCCCGCGGTGGTTTCCTACAAGGAGTGTCTCAAAAACCACGCTGCCAGTATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCCCGCTCGCTAACGTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACATCAGTATCAAAATAATCATTCCAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCGCCACCCCATCATGGCCCCGGCCTGTGTACTAGCTCAAGCCCAGGCCCGAGTCCAAGCCCAAGTCCGTTGTCAAGCCCAAGCCCGCCGCCTCTCTCCCACCGTTTCCCAGGTTCGAGACCGGTCCAGGGGCTCTTCGGCCAGGGAAACGAGCATCACCTTACGAGTTTCAATCTTTCCGAGAGCCCCAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAATTTCTCTGAGAATTTGGGGTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAGGGTGTGGATGCACAACAATAAGAACAGTAGCAGGAAGAGATCGTTGGAGCCTGATGAAAAGATCAATGTCAATGCTTCTGATACTCTTAATAACAATCCATACAGCACCACCGATGACACTCACTGA


Promoter Sequence:
>Vu_14894::LG3:53957282-53959282(+)
GTGGAAAAGGAAGCTCTTGATCACAGGATCGCCTAGGAAGCTCCAGATCACCGATCAGACGAACCACTGATGAGAAATTTTAGAGGGAAGGAGGAGAAAAGAAGAAGCTTGAGTTTTAGAGAGATATAAATTCTGAGAAAATTATATGAGTTGTGCTTTGGAAAAATTCTATAAAATGCTCAAACTCTTTTATTTGAGACATATATCCTTCCCTTCCATATGTCATTTTAAGGGTGATTGACAATAAAAATATTTCAATGTGTTTTTCTACTATGAAAATGAAGTAAAGAGCTTGCAAATATAAATATATTTTTTTTACGTCAAATCACTTATAGATTTAAATAAGTGAAGTAATTTATATAGGTAATTAAACATCCAACATAAATTATAATATATAACCGTTTTACTAATTTACAAAAATATTATTATGTTTATTGTTACTTTAAATAAATAAGGTGATGTGAAAGACATTTGTATTAATGAATATTTAGATAAGTGTAAAACATCCTTATATTTAATTTAAAAAATCAAATATTATTCATATATCCATTATATTTAACCAACATAAAATTATACATTAAAAATTAAAATTTATTCAAATAATGTAACCAAAGACGGATTTATTCATTATATCTGATGAAACCAAAGTCATGTGCGTATACATAAACTATTCATGAGATTTTCTAAGGGTGAGATAATTAATTATTTGAATGGTTTCGTGGATTAAGGAGGACCTAGGTAGCTAACCACACATTTCCTTAGTCAAAGTTTAATTTGAATTAGTGATCATTGTTATGCTATCACTAATCCCCGTCACATGAAGGAAACAAGAACTGTTCGATTTGAACTTCCATTCTTAATAATCACCACAAATGTACAACCGCGCATTAAAGAACTCAAGACTTAACTTTTGATTTTTCTCTCTGCAAATGGGTTAGTGGTAGGGAGACCTTTCAAGTCACGTTAATATCGTTAAAGAACCCAAAATATTCTTATTAATTAGTGCTCCATTTTAAATAAATTATTCTTACAAAATATATCCAATCTATGTTTTCAACAACTTAGTCTGAATTATAAAAAAATTAGTTATATTATTAGATGTGTTACATGTAATATTAAAAAGGGTGATAATTATAATTAACCTACGAAATTAGCAATACATAGTTTACAATATAAAGTCAAAGGAAAACCAAAACTAACAATAAGAGAGTCTAATTAACTAATAGTAACAGTGTTTTTGGTCTGATTATTCCACCGTTGACGCTTGACCCTTGCTCCACAAAGTAACTCACATTGACCGCTTTATCCACATCGTTTACCATAAAATGTAGTTAACTTTTTCATTTACATCACGTAAGAGGTTTGAATCCTTGGATGAATGTAAATTAGTGTTAGGGTTGAAGCAAATGAAGAGAAGATTTTTGGGTGGAGATAGGAACACGAAGAATGAAATGAATATTTGTCGGAAAGTATTGCATTTGGTATTTATTTGCAGATGTCTCACAGCTACGCAGCACTTCCCAAAGGCCGCCACGTACCCTCCAACACTCACTGTCCCTTCAACACGAATCAAACAAATTTATTGCCCCCAACAAACTCATGTCAACTTTCAAAAGTAAAATCGAAACTAAACCTTAATTACCACCATAATTTTACAAACACATCGTGTCTTAACTTCACTTCTCCTTTGCCTTCTTATCTCAAATCATTGTTAGAGATTTTTGGACCCTTTGGATTCGCTTTCTGCATCTCATTCCCCATTTAAACCTAAGATTTTGTCATCACTTCACATTACAAATCATCATCATCATCACTTCCACCGCCATCCACCCCCTTCCAAACTCTTAGCTTTAGATTCCTTTCCCTTTTTTTTCCCTTTCTAATGACACAATTCAACTCTTCAAACAACACTTTAATCATGTCAAAACTCTAATAACCCCTGTTTCTCTGTCTTTTCCCTTTTATATCAATCACTCCCACTTTTCACAAACTCACATACA


Gene Sequence:
>Vu_14894(+)
ATGGACCTCACCAACGACGCCAACGACACAAATTCTCAAACTCAAACCCCCCAACAGCTCACCACCACCACCACCACCAACGGATCCCTCAAGCGCCACCGCCCCACCACCGTTCCTCCTCCCTCACAACCACCGCCCGCGGTGGTTTCCTACAAGGAGTGTCTCAAAAACCACGCTGCCAGTATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCCCGCTCGCTAACGTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACATCAGTATCAAAATAATCATTCCAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCGCCACCCCATCATGGCCCCGGCCTGTGTACTAGCTCAAGCCCAGGCCCGAGTCCAAGCCCAAGTCCGTTGTCAAGCCCAAGCCCGCCGCCTCTCTCCCACCGTTTCCCAGGTTCGAGACCGGTCCAGGGGCTCTTCGGCCAGGGAAACGAGCATCACCTTACGAGTTTCAATCTTTCCGAGAGCCCCAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAATTTCTCTGAGAATTTGGGGTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAGGGTGTGGATGCACAACAATAAGAACAGTAGCAGGAAGAGATCGTTGGAGCCTGATGAAAAGATCAATGTCAATGCTTCTGATACTCTTAATAACAATCCATACAGCACCACCGATGACACTCACTGA