Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14880 LG3 53797689 53800632 PREDICTED: cyclic dof factor 1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 53798394 synonymous_variant p.Leu248Leu
G/C,A 53798611 missense_variant p.Ala176Val
T/C 53798754 synonymous_variant p.Ser128Ser
A/T 53799018 intron_variant
A/G 53799071 intron_variant
G/A 53799087 intron_variant
G/A 53799089 intron_variant
T/A 53799115 intron_variant
T/C 53799118 intron_variant
A/T 53799314 intron_variant
C/G 53799490 intron_variant
G/C 53799638 intron_variant
A/T 53799692 intron_variant
G/T 53800108 intron_variant
C/T 53800245 intron_variant
A/G 53800250 intron_variant
A/T 53800251 intron_variant
C/T 53800252 intron_variant
A/G 53800257 intron_variant
G/C 53800359 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14880.1
MSEAAKDSAIKLFGRTISLPRHNEVSANGSSSEPAPPQDYSHHHSPPSSSSFPREVTSTTNHEPDESDKEPSRKELTSTQDDEVLHEELKSPTSSCNLENPKTPSTEIETSLTKSPKKGDQSDTTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSSAASHYRQIMVPETLQNGSLHSAVLTFGSDFPLCDSMASVLNLAEKTQNGVLNGFHSPKHNASTVNNNKTGDDIKSVGASVMASSLCEKRDNATSSHEESVDKIYHQGFSPQLCLTGSSSSSSSPWPYPWNPAMASSAFYQPVSFYPTPAFWRCMPPPSWSLNYQSAPCSGPNSPTLGKHSREGDILFQKPGTESSSNMAENNNTVLIPKTLRIDDPTEAAKSSIWSTLGIEKEKGNSLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFHERT*


CDS Sequence:
>Vu_14880.1
ATGTCTGAGGCTGCTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCCACAACGAGGTTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCATCACAGTCCTCCTTCGTCTTCATCTTTTCCACGTGAAGTGACCTCCACAACGAACCATGAACCTGATGAGAGTGATAAGGAACCATCAAGGAAAGAACTCACCTCAACACAAGATGACGAAGTCTTGCATGAAGAACTGAAATCTCCAACATCTTCATGCAATCTCGAGAACCCCAAGACACCCTCAACGGAAATAGAAACTTCCTTAACGAAATCACCTAAAAAGGGAGACCAAAGCGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATCCTTCCATGCCCTCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCACTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAACAAAAACTCTTCTTCTGCTGCATCTCATTATCGTCAAATCATGGTTCCTGAAACCCTTCAGAACGGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAACCTTGCTGAGAAAACACAAAACGGTGTCCTCAACGGGTTTCATTCACCTAAGCATAATGCTAGCACTGTTAATAATAACAAGACTGGTGATGATATTAAGTCAGTTGGTGCTTCTGTTATGGCTTCATCTTTGTGTGAGAAGAGAGACAATGCTACTAGCTCTCATGAAGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAATTGTGCCTCACAGGTTCTTCTTCATCATCATCTTCTCCTTGGCCTTATCCATGGAACCCTGCAATGGCTTCTTCTGCTTTTTACCAACCTGTGTCCTTCTACCCCACACCAGCATTCTGGAGATGCATGCCACCACCATCTTGGAGTTTAAATTACCAATCTGCCCCTTGCTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGAAGGGGACATCTTGTTCCAAAAGCCTGGCACTGAAAGCAGCAGCAACATGGCAGAAAATAACAACACTGTGTTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCGATATGGTCAACACTAGGGATCGAAAAGGAGAAGGGTAACTCTCTGAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGGGGCAGTGATGACAAGAAGAACCATGTGGTGGTTGAAGCATCCCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCTCTTGTATTCCATGAGAGAACATAG


Promoter Sequence:
>Vu_14880::LG3:53800632-53802632(-)
TGTATTGGTACGAGCACGAATACATGTGTATATTGGTGGGGATGAGGATGAGACAAAAATTTCATATTCGGTGGGTTTAGGTGTAGGGATGGAGAATAATTTTTTCTTTAGAGATATGTATGAGATAAGGAAACTTGTCATTGTCTTGTTGTGATCCCTAAAGATGATGATAAAGTAACTTTTTTTTGCCATCAAGTAAGTGAGGAGAGAAAAATGTCCTTAGCAACATTAAGCTTCTAAGGTTATGTCATGTATTATAAGACCTCCCTTAAGTAAGAGAAATGCCTTCATAATAATCCTTTGATTCAATACAGGAATGATCTTAGGGGTGTTATGATGAGGAAATTTATTCCCTCTTACTATAAAAGTAAGCTTTTGAGGAAGCTCTAAATGGCCCACAAGAAGGACATCAGTATAGAGGAATATAGATAACATGTGGGATTATATATGAATAAGGCAGGGATAAGGAAGGAGGAAAATACCATTATTTTTAAGTTCTTAAGTGGGCTTAATCTAATTATAAGAGTTAAAGTTGAACTCTTAAATTCTAGAGATTTGAATGATTAATTGCAACTTTGTATCAAGGTAAAGATTTTACAAAGAGAAAATAAAGTCTTACTAATGTGATGGAAGTGATATGAGACACATGATTAGTTAAGAAATTTGGCTAATGTGATGACTTTTGAATGTCCTTTAACCTTTCACTATTTTTGGGCTTAAAGTCAAAATGTGTGATATGAATTTCTTTCCATCGTTATCGAATCCTCGCATTTATTTTCTCAACTTTTCTCCATTTGAGAGTCTGTATTTGACTATGAAGCTCAAGTAACAAAAGAACACCATTCGTATTGTTTTTCTAGAGTTCTTTTGATTGTTGCTAGTTGTTCGTCATGTTATCAATAGGTACCATGGTTTCTTGCCTCGACCGATGGTAAATGTCAAATATTCTTAGATAAGACTGAAATGATCTATACAAAACATTCAAACTTCCAATCCTATATTTCCTTTTTCATTTTAAGTCAAGTCATTTTTTGTTGTTGATATTTACAATTTAAAAAATGATGAGTTGAACTCAAATTAACTTTGAGATAAAATGCTAGCTTATTTCATTATGAACCTTATTCACAATTCAGTTCCAATATTAGGAATTAAATAATCTCCTAGTCCCCATGTACCCATCTAACAAATAATGTTGTTTAATTCTCAAGCATATTTCATACACTACTAATAAAAAAAAGATAGACCTTTACCCTAGTTGATGCATATGTTGATCATAAAGGCATTAAGTCTGGCCTTTTTCTTCCTTCCATTAGTATTTAGAAAGTTTTGTGTAAGAGCAATAAAAAAATGAGGAGGTTAAAATTGCCAAAAAGAGAAAACAGTTAAAAATGGGAAAGAAAAGAGCGAAAGCCGAAGCAGACAGCATTGAAACGAAGAAGGTTAAGGTCAAAAACGAAAGGTTGGGAAGTTATTTGACCAACTATTGAGAAAGAAGGCAGAAAAAGAAGAAAGAGGAAGAGATTGACAAAAAGGCAAAAGATGAAAGCAGATGACATGGAATGAAAAAGGGGTGGGACACACACAGAGCACTATCTTTATATGTAACTTGGGGGAATCCAACCGCACACGAAGATCTCATAGGCCACAAGAACTTGTGGCTCACAAAATTTCCCCTTTGCTGAAGTGGCATTCCATTCCAACCTTGTTAATAAACCAGTTCACACAACACTTCTCTCTCTCTCTCTTTCTTTCTTTTATCCATTTTTTCCCTGCACACGATGATCAGGTAATCAGAGAGAGAAAAGAAACAAAGCCAACACTGCTGGCTACACTTGCAACAACAACAACTACTGCTACAACTGTTACTTTTCTTTATATACGTTTGTTTCTATTTTTTTCTCATTTATTTTCAAAGAGCCTGAGAAAAAGTAGAAAAGAGAGAGAGAGATAGAGAGAGTGGTGAAGCTGAGTTGTTAGTTTAGTTACAATATAACACAGGA


Gene Sequence:
>Vu_14880(-)
ATGTCTGAGGCTGCTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCCACAACGAGGTTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCATCACAGTCCTCCTTCGTCTTCATCTTTTCCACGTGAAGTGACCTCCACAACGAACCATGAACCTGATGAGAGTGATAAGGTATGAGCCATGATGGTGTCTGTATAAGGCTTGAGCTTCAAACATGACAAAAAAACATATCATGGCCCAAGCTAATTTGTACTACTGTATTTTCCAAATTTAAGAGTGACCCTTTTTTCAGAAGCTCACGATTGATAATGGGTTCATGCAATTTTTCATCTTTTTGGCTCCTTGTTAAGGGGCCAAGCAATCTCCATGGCTGTTTTGAGAACCTTTTTGTTTGAAAACTACACCAAGTGTTTTGCATGATCACATATGGTTCATGAAATTGTTTACTTCTTTCTTTTAATTTTGCTGAATAGTTTCTTTAGTGGTTGCTACAAGTCATTGTGGGGCACTGTCATCGAAACTGGATCCAGTTCATTCCCAGAATATAATTTTGAGAATAACGAATAATATTATGTGGTTGGACTCGCTTTGCTTCTGTCCATTCTATTGGTGGATCAATAATTTTGCTTTAGACTTTTCTAATAATCCAAATTCCAAACCAGTTTTTCCAGCTCACTTTATTCATATTTGAAAAACATTTATCCTAAACTGGTTGTTAATTTGCAACTTCGAGTTCATTTCTTATTGGATCTCTTGCAGCAAGTTCTGTAGCCATTTGGATGGTTTGAACTTTGAAGATTTGTTATTGAATTTCTTGTTCTACCAAACTATAATTGCTTTTCACGCGTCGAACTTCTATTGGATCTAACTTTATTATAGTTTAACACTGTCCACATTCAATTGCTTATTTTGTTTCCGATTAAGACTTGTCACATAGAAATGCTTAAAGAATATTTCGCCTTTTTTTTTATTGTTGAACTATATTATACTCTTTTAATTTCTTGCTTAGACCTTTTCATAAGGGGTTGAAAATTTTTTTTAAAGAAAAAACAACTTGTCCCTTCAATGTTGGTTGATTTATAACAGTTGTATTCCGGATTAATTTGGTTTCTCACTTTTTGAATTCTCCTCCAATGACCATAATCTAGTTTGTTTCCTCTGAAAACTTTGTTTAATTATATAATTCAAGAAATATCAGTCAGTATTCACCTCTTTTATTCAGAAGTTACCGAAATTTCCATTATATTGTTCTGATATTCAATTGATTATCTTCTCTGTACTTTCCCACAACACTCTCTTGCATCAAGAAAAGGTCATATATGAGAGATTAAAACCTGATGAAAAAGAAGAATAAATCATATACCTAAACTCTGTTTTCTCCCCTGTTCTATCTAAAATGCTTCAAATTACCAGAAGAAAGCAATATCTTCGTGAATCCTAATCACTACAAAATACAAAATTACGTTTTGTGCCTCTAAAACATGAGACTTGAAAAACTGACATATAACACAGTTTTCTTTGCCCCTAAAGGATGTGAATTAGACCGTATAATTAGTTTCTTACATAGAAAAAATCCTATTCTTGTGATACATGATAGTTTATAATACAAAAATCTTGACAATACAAGTGCATCATGTCTTACCAAAGTATTGTGTATTAATCTCAGGAACCATCAAGGAAAGAACTCACCTCAACACAAGATGACGAAGTCTTGCATGAAGAACTGAAATCTCCAACATCTTCATGCAATCTCGAGAACCCCAAGACACCCTCAACGGAAATAGAAACTTCCTTAACGAAATCACCTAAAAAGGGAGACCAAAGCGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATCCTTCCATGCCCTCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCACTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAACAAAAACTCTTCTTCTGCTGCATCTCATTATCGTCAAATCATGGTTCCTGAAACCCTTCAGAACGGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAACCTTGCTGAGAAAACACAAAACGGTGTCCTCAACGGGTTTCATTCACCTAAGCATAATGCTAGCACTGTTAATAATAACAAGACTGGTGATGATATTAAGTCAGTTGGTGCTTCTGTTATGGCTTCATCTTTGTGTGAGAAGAGAGACAATGCTACTAGCTCTCATGAAGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAATTGTGCCTCACAGGTTCTTCTTCATCATCATCTTCTCCTTGGCCTTATCCATGGAACCCTGCAATGGCTTCTTCTGCTTTTTACCAACCTGTGTCCTTCTACCCCACACCAGCATTCTGGAGATGCATGCCACCACCATCTTGGAGTTTAAATTACCAATCTGCCCCTTGCTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGAAGGGGACATCTTGTTCCAAAAGCCTGGCACTGAAAGCAGCAGCAACATGGCAGAAAATAACAACACTGTGTTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCGATATGGTCAACACTAGGGATCGAAAAGGAGAAGGGTAACTCTCTGAATGGAGGAGGGCTTTTCAAGGCATTTGCATCAAAGGGGGGCAGTGATGACAAGAAGAACCATGTGGTGGTTGAAGCATCCCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCTCTTGTATTCCATGAGAGAACATAG