Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14857	LG3	53443110	53445663	PREDICTED: ethylene-responsive transcription factor ERF118-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of developmental process, regulation of transcription, DNA-templated, cellular localization, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding

SNP	Position	Effect	Amino acid change
A/T	53443306	5_prime_UTR_variant
T/G	53443665	5_prime_UTR_variant
C/T	53443824	5_prime_UTR_premature_start_codon_gain_variant
G/A	53443825	5_prime_UTR_variant
T/G	53443863	intron_variant
G/A	53443976	5_prime_UTR_variant
T/C	53444391	missense_variant	p.Val75Ala
G/T	53444440	missense_variant	p.Lys91Asn
T/C	53444539	synonymous_variant	p.Ile124Ile
T/A	53444549	missense_variant	p.Phe128Ile
C/T	53444955	missense_variant	p.Ala263Val
G/C	53444957	missense_variant	p.Ala264Pro
G/T	53444968	missense_variant	p.Glu267Asp
T/G	53444971	synonymous_variant	p.Thr268Thr
G/A	53444975	missense_variant	p.Gly270Ser
C/A	53445093	missense_variant	p.Pro309Gln
C/T	53445096	missense_variant	p.Ser310Phe
G/T	53445179	missense_variant	p.Ala338Ser
A/G	53445327	3_prime_UTR_variant
G/A	53445335	3_prime_UTR_variant
T/A	53445444	3_prime_UTR_variant
G/A	53445545	3_prime_UTR_variant
C/T	53445606	3_prime_UTR_variant
C/T	53445633	3_prime_UTR_variant
A/G	53445645	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14857.3

MLEALNQSAKTMKKLKQKRNPFHDSKMTRKLRIICDDPDATDSSSDEEEHFGNGRKVKRTMVEIALPPVPVNSLVAAETSTESSNNEELNKKRVLAKNPSVKRQTCGKYKGVRMRKWGKWAAEIRDPFKGARVWLGTYNTAEEASQAYETKRLEFEAMAKALSDGRSNNNNNTGTNNNNNHVVASVVTVGASEKKNSNYCVSSAAESATDSKSATIDYSESSILSHTSPYSVLELDTSASNLTVSGKVSGNEVVETKGLETEAAEIETEGLKAESFEAEFAELDIPDLSMLSVPHPSAVASNAANVGAPSQFEFDWFALDSLEHGFDEELGFDDDLAALEDIQIYGFDDGQPSELPDYDFDDIGADEFAGWIEEPLNIPCV*

>Vu_14857.2

>Vu_14857.1

CDS Sequence:
>Vu_14857.3

ATGCTGGAGGCTCTTAATCAATCGGCTAAAACGATGAAGAAATTGAAGCAGAAGCGAAATCCATTTCATGACTCCAAAATGACAAGGAAACTGCGCATCATTTGCGATGATCCTGATGCCACCGACTCATCATCGGATGAAGAGGAGCATTTTGGGAACGGTAGGAAGGTGAAGAGAACTATGGTTGAGATTGCTCTTCCACCAGTTCCAGTTAACTCTCTCGTTGCAGCTGAAACTAGCACCGAGAGTTCCAACAATGAGGAACTGAACAAGAAGAGGGTTTTGGCCAAAAATCCCTCTGTGAAGAGACAAACTTGTGGCAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCAGAAATTCGCGATCCTTTCAAGGGTGCGCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCAGGCCTATGAGACCAAAAGGCTTGAATTTGAAGCCATGGCCAAGGCTTTGTCCGATGGGAGGAGCAACAACAACAACAACACTGGCACCAACAACAACAATAACCACGTTGTTGCATCTGTTGTAACTGTGGGAGCCTCAGAAAAGAAGAACTCCAACTACTGTGTTTCTTCTGCTGCAGAATCTGCAACAGACTCCAAGTCTGCTACTATCGACTACTCAGAGAGTAGTATCCTGTCACACACATCTCCATATTCCGTGCTTGAGTTGGATACCTCTGCTTCCAATTTGACTGTGAGTGGTAAGGTTTCAGGCAATGAAGTTGTTGAGACTAAAGGTTTGGAGACTGAAGCTGCTGAGATTGAGACTGAAGGTTTAAAAGCTGAAAGTTTTGAAGCTGAATTTGCTGAGCTAGATATTCCTGATTTGAGTATGCTGAGTGTGCCACACCCATCTGCTGTTGCTTCCAATGCTGCCAATGTTGGTGCTCCATCTCAGTTTGAATTTGATTGGTTTGCATTAGACAGTCTGGAGCATGGATTTGATGAAGAGCTTGGGTTTGATGATGATCTTGCTGCCTTGGAAGACATTCAGATATATGGCTTTGATGACGGTCAGCCTAGTGAGCTTCCTGATTACGATTTTGATGACATTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAA

>Vu_14857.2

>Vu_14857.1

Promoter Sequence:
>Vu_14857::LG3:53441110-53443110(+)

TAATATAAAACTTTTATATATATAATGTAATTGTTTATTATAAAGGTTTAGTTCGTTTTATAGTTAATATTGTTGCTAAACTCTTAATTAAAAGAAGTCTTACTCACTTTACAATATTTTATATAACATGTATGTTCTACCAACATAAATATATTTAATTATTAACAAAAACATTGAATATAATATTTTTAAAATAATTTTAATGTAATAACTTTACTTTTTCTATAAATACATTATTTATATATATAAAGGCAACTATCTGTTTTATATTCACATTTGTTTTCCAAATTTACACTTTAGATAAAAAAAATTATAATTATAATAATTATTTTATTAATTTTATCATTTTTTAAAAGTTAAAATTTTTTTAACTTAACTTTTTTAATTATAAAACTATCTATAAAATAAATGCAATTTATTTACAATAAATTTATAAAAAATATTTATATTTAATTTCTTGACAATAATAATAATAATATTTCTTTATTATTATGCACATGTATTTTCACTAGTTTTTAATAAAAAATAATAAAAGAATATTTTAAAACATTTTAACAGAAAAATAAAGTGAAAACATAAATCACAATGAGACTTTTTATTATACTATTGAAATTACAACTTTGGAAAATAATAATTAAATTTTATTTCACATCACCTCTCTTATATGTTTAACAAATATTTTATTTTAAAACGAAGAAAATCTTACGATATTTGGTTCCAAATTAAAGCTTAAAGGCTAATAGGAATATAAACTAAAAAATTTCAATATATACATTTATAATTAAAGTAATTTAACAATATATTTTGTAATCACGATTATTAATTCAAATTCAATTTTCAAACCCAATACCATCAATATTTGAAGATAACATACATTTAGTTAGAAAAAAATTAACGTTTGAAACTTAATTAAGTAACTTATGTATACTTATTTCTCTAATTGATTACATAGAAGTGCATTTAAAATAATAATAAAAGTACATTCTTGAAAAATAAATCTCTTCTTTAAGTGCATGTCTGGATACTCAATAAAGAAATAAATAGCATGCGTTCATCTTAATACAATGTATTACCTTTTTCAAGAATAACGCCAATTTTCATTATCATATAACGCTCAATCAAACATATTAAAACAAATTACTCATTTTACAAGACAAAATAATAACTAAAACGCGTTTTTCTTAACACATCTTACAAATATCGAGGTGAAATACAACCCGTTCAACGAAATTAATATGCTTAAAAATAATAAATTTATATTAAGAAAATAAAACAAATTATATTAATTACTGAGAGAAATGTTAGGAATAATGTCTTCCAAACACCTCTTTTCTTTCTTAATAACTAAAACTTATTAAAAATAACAATTTTTTATACTTACCCTAAATCAAAGTATCGCTAAATAAGAAATAAAACTTCAACGTTGACCATTTTTAATAAATTATAACTCTTAATAAAGGAAATGGAGGAAGACTGAGTTAAAAATGTAACTTACGCAAAAATTATTTTATTGAATAAATTTGAAATAAAAAATTTATTTTATAATTCATAATTAGATTTATATGTTATTTTTCATATTATATATGTGTGTGTATGCATATATAAATTACATATATATAATTTTGAAAATATACTAAAATATGAATGATGTAAATTATGACTATTTTAAAATTTAATTCAGTAGGTAAGATAATATATGTTTAATTCAAGAGTTGGGTAAGTTAAAATTATGTTATCTATAAAGGTATTAAATGTGAAATATTTAGTAGAAGTAAATTGAACAGCTGTCATTTAATATTTTCTTTAAATTGACAATATGTTAGTTGCTTTATTTTATTATTTTAGGAGACAAAAATGCTAAATGAAAAATCAATACCATACATGCATGTCTTAGAAATAGAACAGTTAGAAAAGGAACATATTTAATTTTGTAATAAATAGTTGGCAAATATATCTTCCAAAAAAACATAAAAATCTACAGAAGAGGTTTAGAGAGAGCA

Gene Sequence:

>Vu_14857(+)

ACACATTCATCATTCACACAAAGGAATGATGAAAAAAAAATGAAAAGGGTGGTATAAGAGATAGTAGAAAAAACAGAGGAGAGAGAATAAGCAGAGTGAAGAGAGAGTGAGAAACCTCAGGGAGAAAGCGACAGGGCAGAGAAAAAAAGGGTTGGGTGCCAGCCACCACAACAGTGAATTCTGAATAATACACACAAACATACAATTACAAACAAAACCAGGTAAATTTACCCTCAGAAAAGTCTTAAAGATTCTCGTGGCATAAACAAGGTAGTGATACTTTTCAATATGCAACTGGGTTGTCTAATGTTTTATAGAGATCTGCGTCTGTGTCTGTTTTAATCCGTGTGCCAAGGTCGCCGCTTTTTTTTCTTTTGTTTTTTCTGTTAACTCAGACATAGGTGAGTAAAAAATGTATTTTGGGACAGAAAAATCTTGGCCATAGATTTATAATCTTTTCATCTAATAATACTGTCCTGTGTTGTGTTTCTATATATACTGTGTAACTCTATCGCTAAAAGTTTCTCTCTTTTTGGTCAGAGGGGAGAGTGGTGTTTTTTTCCTGGGATTTCTGTGAGGAATCCACTGAAGGAGGAAGAGCAGGAGATTTATGTCTTCTTGGTTTTATTTGGAAGTAGTGATTGGAGCTCTGTTGCAGCTCGGGTTTGGTTATGCTTGTGTTTGCTGCATGCTACTCTGGCTAGTGTTCAATACCGCTGTTTCGATGAGTTTGAGGCCAAAACGGTATGTGGGTTTTGTGCTTTTTGTTGTTGATGCTTTGGATTTGATGTTGTGTTGGAGTTTGAGGTTTTTCTTGTGGTTGTGTTTTTGGTTGTTTTATTTTGCAGGACATGTCATGGAGTTGTGTTTTGTTATGGAGGCTTTCAGATAAAAAAGTTCTCTAGTTTCTTCCTCCTTCTGAGAGTGGATCTCACCTGATATTCTTGAAATTTTGAGGTTTTCTTTTTGTTTTATTTAATTAAAATTTTGTTTTTGTTTTGGTAAGCAATTTTCTGGGTGTTTGAGGGGTTTTAGGGGTTTTGACCCAAATTTTCACCATGCTGGAGGCTCTTAATCAATCGGCTAAAACGATGAAGAAATTGAAGCAGAAGCGAAATCCATTTCATGACTCCAAAATGACAAGGAAACTGCGCATCATTTGCGATGATCCTGATGCCACCGACTCATCATCGGATGAAGAGGAGCATTTTGGGAACGGTAGGAAGGTGAAGAGAACTATGGTTGAGATTGCTCTTCCACCAGTTCCAGTTAACTCTCTCGTTGCAGCTGAAACTAGCACCGAGAGTTCCAACAATGAGGAACTGAACAAGAAGAGGGTTTTGGCCAAAAATCCCTCTGTGAAGAGACAAACTTGTGGCAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCAGAAATTCGCGATCCTTTCAAGGGTGCGCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCAGGCCTATGAGACCAAAAGGCTTGAATTTGAAGCCATGGCCAAGGCTTTGTCCGATGGGAGGAGCAACAACAACAACAACACTGGCACCAACAACAACAATAACCACGTTGTTGCATCTGTTGTAACTGTGGGAGCCTCAGAAAAGAAGAACTCCAACTACTGTGTTTCTTCTGCTGCAGAATCTGCAACAGACTCCAAGTCTGCTACTATCGACTACTCAGAGAGTAGTATCCTGTCACACACATCTCCATATTCCGTGCTTGAGTTGGATACCTCTGCTTCCAATTTGACTGTGAGTGGTAAGGTTTCAGGCAATGAAGTTGTTGAGACTAAAGGTTTGGAGACTGAAGCTGCTGAGATTGAGACTGAAGGTTTAAAAGCTGAAAGTTTTGAAGCTGAATTTGCTGAGCTAGATATTCCTGATTTGAGTATGCTGAGTGTGCCACACCCATCTGCTGTTGCTTCCAATGCTGCCAATGTTGGTGCTCCATCTCAGTTTGAATTTGATTGGTTTGCATTAGACAGTCTGGAGCATGGATTTGATGAAGAGCTTGGGTTTGATGATGATCTTGCTGCCTTGGAAGACATTCAGATATATGGCTTTGATGACGGTCAGCCTAGTGAGCTTCCTGATTACGATTTTGATGACATTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAAGTTTTGCAGCTATAGAGGAACGAGCTATGTCCGATAGAGTAGTAGTATTACATTTCAAGTTTTGTGGTATTTGGTTACAATTGTTGTAGTTTTGTGAGATCTGAGGATTAAATCTGGTCCCGGGTAGTGTTTTGTCAGTTGAGTTTTAATTTATTTGTTTCTTTAGAGAGATAGAAGATGTATGAGAGGCAAAGGGAGAATTGCCTTGGGTTTTCTTGTGCTATTAGAGCCGTCCAAGGGGGTTCTCCATAGACTGTAATCATGAGTTCTTTGAGTGTGTAGAAGACATTTCCGTTGTTCACAAATTTATTATCTCCGCCCATCAAACACAAATTCTATGGTATCCTCAC