Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14853 LG3 53406537 53409534 PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 53407160 missense_variant p.Glu208Asp
T/A 53407531 intron_variant
G/T 53407551 stop_gained&splice_region_variant p.Gly269*
A/C 53407714 missense_variant p.Lys323Thr
T/A 53408108 intron_variant
C/T 53408113 intron_variant
G/A 53408462 intron_variant
T/C 53408485 intron_variant
G/A 53408490 intron_variant
A/T 53408691 intron_variant
T/C 53408798 intron_variant
C/T 53408802 intron_variant
A/T 53408810 intron_variant
T/G 53408845 intron_variant
C/T 53408854 intron_variant
T/A 53408862 intron_variant
C/A 53408863 intron_variant
C/T 53408896 intron_variant
C/T 53408899 intron_variant
G/A 53408923 intron_variant
C/T 53408935 intron_variant
G/A 53408953 intron_variant
C/T 53408969 intron_variant
C/G 53408981 intron_variant
A/G 53408983 intron_variant
C/A 53408984 intron_variant
C/T 53408993 intron_variant
G/A 53408997 intron_variant
A/G 53409001 intron_variant
A/G 53409013 intron_variant
G/A 53409016 intron_variant
T/C 53409031 intron_variant
T/C 53409037 intron_variant
G/A 53409039 intron_variant
C/T 53409052 intron_variant
A/C 53409055 intron_variant
T/A 53409078 intron_variant
G/C 53409079 intron_variant
T/G,C 53409110 splice_region_variant&intron_variant
A/G 53409133 missense_variant p.Ser341Gly
C/T 53409135 synonymous_variant p.Ser341Ser
G/T 53409173 missense_variant p.Arg354Leu
T/A 53409177 synonymous_variant p.Pro355Pro
T/C 53409195 synonymous_variant p.His361His
G/A 53409200 missense_variant p.Arg363Gln
C/G 53409208 missense_variant p.Arg366Gly
T/C 53409230 missense_variant p.Ile373Thr
C/T 53409239 missense_variant&splice_region_variant p.Ala376Val
T/A,G 53409253 intron_variant
A/T 53409259 intron_variant
C/T 53409263 intron_variant
T/C 53409264 intron_variant
T/C 53409267 intron_variant
C/T 53409294 intron_variant
A/T 53409301 intron_variant
G/A 53409310 intron_variant
C/T 53409321 intron_variant
G/A 53409322 intron_variant
G/A 53409325 intron_variant
A/G 53409333 splice_region_variant&intron_variant
G/A 53409334 splice_acceptor_variant&intron_variant
A/G 53409352 stop_retained_variant p.Ter382Ter
A/G 53409382 missense_variant p.Gln392Arg
T/C 53409392 synonymous_variant p.His395His
C/T 53409393 missense_variant p.Pro396Ser
T/C 53409407 synonymous_variant p.His400His
T/C 53409419 synonymous_variant p.Ile404Ile
A/G 53409421 missense_variant p.Asp405Gly
T/C 53409428 synonymous_variant p.Phe407Phe
A/G 53409431 synonymous_variant p.Arg408Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14853.1
MSSNKNMGKTVGAKTARACDGCIRNRARWYCAADDAFLCQACDSSVHSANPLARRHHRVRLKIISHINSGNDLSSGMSNSRVPSWHKGFTKKPRTPRHGRHTNKGVKSPFNVVPEACPQETIWNSHEESTDQLLYRVPATPSSEQGVSMTDERKVVFLGCESAIEIAEFSADVESLLGKGLESEFVGMEELGLVGAKEVEEHVKVEEEALELDKNQQVLKENYQLKKKILLLQLDYEAVISAWTTQKSPWTTGAKPNLGTQQFWPHFMGTCGVEFCHLRGELGELSGCHSTMGDDGREARVLRYREKRRKRLFSKKVRYEVRKMNAEKRPRMKGSKENLVQPSAFFLASSAPSAASSPTTPSTRPPTGDNDPNRVGGPINETKESRSPRDDDSHDIHTASIVAGLMVFDASLFGSAPGTTQGMATHARVAAYKVCWKGGWNG*


CDS Sequence:
>Vu_14853.1
ATGTCTTCCAACAAGAACATGGGAAAAACTGTCGGCGCAAAAACGGCAAGAGCATGTGATGGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCGGCCGACGACGCGTTCCTATGCCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCCATTAGCGCGTAGACACCACCGCGTTCGCTTGAAAATCATTTCGCACATTAACTCCGGCAATGACTTATCTTCTGGAATGAGTAATAGTCGTGTTCCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACACCACGTCACGGGAGGCACACTAATAAGGGTGTCAAGAGCCCCTTCAATGTGGTACCGGAAGCGTGTCCCCAAGAAACAATTTGGAATTCACATGAAGAGAGCACAGATCAGCTTCTTTACAGAGTACCCGCAACTCCTTCATCTGAACAAGGGGTATCCATGACCGATGAGAGGAAAGTTGTTTTTTTAGGATGTGAAAGCGCTATTGAGATTGCGGAGTTTAGTGCCGATGTTGAGAGTTTGTTGGGGAAGGGACTAGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTGCCAAGGAGGTGGAGGAGCATGTGAAGGTGGAGGAGGAGGCGCTTGAATTGGATAAGAACCAGCAAGTACTCAAAGAAAATTATCAGCTGAAGAAGAAGATACTATTGTTGCAGTTGGATTACGAGGCTGTAATCAGTGCTTGGACGACCCAAAAATCACCATGGACAACTGGTGCTAAACCAAACTTGGGCACTCAGCAGTTTTGGCCTCATTTCATGGGAACATGTGGAGTCGAGTTTTGCCATCTTCGTGGGGAATTGGGTGAATTATCTGGGTGTCATTCAACAATGGGAGACGATGGAAGAGAAGCAAGAGTATTGAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAAAAAGTAAGGTATGAGGTTCGAAAGATGAATGCGGAGAAAAGACCCAGAATGAAAGGGAGCAAGGAAAACCTAGTGCAGCCGAGTGCCTTCTTTCTCGCGTCGTCTGCTCCGAGTGCGGCCTCGTCCCCGACCACTCCATCGACGAGACCTCCGACGGGCGACAACGACCCCAATCGTGTCGGCGGTCCTATTAACGAGACTAAGGAGTCTAGATCCCCTCGCGACGATGACAGTCACGACATCCACACAGCCAGCATAGTCGCAGGATTGATGGTTTTCGACGCAAGTCTTTTTGGTTCGGCACCCGGAACGACGCAAGGGATGGCGACGCATGCGAGAGTCGCTGCTTACAAGGTTTGCTGGAAGGGAGGGTGGAATGGCTGA


Promoter Sequence:
>Vu_14853::LG3:53404537-53406537(+)
CAAACAAAGAAGGACTCAAAACTTACCTCGATGGTTTGTGAGGCAGCTAACAGTTTAGGGTCTCTCGACAACCATGCACTCTCTATCGATGAAGATACAACAAGCAAGGACCTTCGACAACAACAATCCCTCTAATTACGACAACAACAATCCCTTAATGAAGGATGCCACAACCATGCACTCTCCCTTAACAGAAATAATCCCTTGACAACAATAAAAATTCTTGAGAACTCCCAATTCCAAACATATAACACCCAATTACGAAGAACAAGGGCTCAATTTTTAGGTTCATTGTAAAAAACAGAACATACCTCGACTAGGAACCCTCAAACAAGCTCCCAAACATGCACGAACAACCCTCAACCAAGAACCCTCCACCAACAAGCTTCAAACCATCGAGCAACACCCTTGGAACTAAAACCCTAACGTCATAGCATCAGGCTCCCAATGGCAGCGTCAACGAAGGACAAACCCTCCACCAAAATCATTGAAACCTCCAACTAGAACGAAGCTCTGTCTCTAAGATCAACGAATGAGGGAGACAATCCTTGAGGGAGACGACCTCTGCCACTTCGAATCCGGGAAGAATACAATGAATGACCAATATAGAAAAGCAAGAATAAGGTTGGAACGAGCTTCGTAGAGGAGAAGAAGAGCGAAAATGAAATTGAGAGAAAACTGATTTCTCAAATCCATAATTAACTTAATTCTGGTACTTACCGATGAATCTTTACTCTGGTACTTAACTAAAATAAGATGACATAAATTATCAGTAATTTTTATCAATAAATATAGGTTACTAACAAATTTATAATTGTCGGTAAAGATTGGTTGATAACTTTAGTAATTCTTAGATGTAAGTTGATATATTTAAAAAAAAATTAAATAAAAAGGAATTAAGTGAAATATTTTACCAAATGACTACGTATAAAAGTCATGATTACAATAACAACTTTGTTTTTCAAGAAATTTGAATATAAAATGCTCCCACAGTAATAAGAAGATTTGAAATCATAGGTATTCTTCTTTTCATGTTCAGTTTAAGATTTTCAGCTTGGGTTGATTTCTTCTCTAATTTTCATATTTTTTTTTTCATAATTTTCTTTCTAAAACAAAAATATAATTAAATATTAAACAATAGTTAATAAGAGGAAACGTGTTTGTTATTTATTAATTGGTAATCAAATAATAGTATGTTTGAATATATTATTTTAAATTTTTTATTTAAATAAAAGTTATACATGATCTCAAATTAAAATGAAAATATATTGTTAGCCGTTACTTTTAAAATTCATATTATACATAAAATAACTTTTAAAATAGTACTCAATTAGTATATTGAATTAAGAAATTTGGCATGAGTACTTAACTTAACTGATAAGATAAAATTATTTTAGATTATTATAGAAAAAGTAATGATTACTAATCACACTGTAATCCAAATTATTGGAGAAATTATGATTTTGAATATGTTAAATTAAGATAAGATGAGTTTAGTGAAATTATTTATAAAGAAAATTATTAAAATATAAAAATTTAATCTAATTAAAAAACATTACCAGAAAGAGTTTTGCTTTATTTAACATAGCATGAAACAGCTTAAAAAAAATCTACATTTACGAATTTAGAAACCGCAGAGATCTTCCACTGTTATAAAGAAAAAAAGAAAGAAAAAACAAGAGGGTCCATCCCCTACAGGAAAAGTGCTGCTTGTACGACTCGCTGACACACGCGCCCCTTCTCCCTCACTTGTCATTCATCCTACACGATCATCATGATTATTACATAATAATTGTGTTCCACGGTCTTCATATTTTCTTGAACAACCTTTCCCCCATAAGCAGCATTCAGAAACTTCCCAGAAATTCCGATATATAGTCCAATCAAACCCAATGATGTTTTGCTCGGAAACCAACTCAACATCATTTCTCACCGGATTCAACTCTCAGTCGTTGTAGGCTCCGATCACCCTCTCAGAATTTTTTTTCTGTAAGCAAGTA


Gene Sequence:
>Vu_14853(+)
ATGTCTTCCAACAAGAACATGGGAAAAACTGTCGGCGCAAAAACGGCAAGAGCATGTGATGGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCGGCCGACGACGCGTTCCTATGCCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCCATTAGCGCGTAGACACCACCGCGTTCGCTTGAAAATCATTTCGCACATTAACTCCGGCAATGACTTATCTTCTGGAATGAGTAATAGTCGTGTTCCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACACCACGTCACGGGAGGCACACTAATAAGGGTGTCAAGAGCCCCTTCAATGTGGTACCGGAAGCGTGTCCCCAAGAAACAATTTGGAATTCACATGAAGAGAGCACAGATCAGCTTCTTTACAGAGTACCCGCAACTCCTTCATCTGAACAAGGGGTATCCATGACCGATGAGAGGAAAGTTGTTTTTTTAGGATGTGAAAGCGCTATTGAGATTGCGGAGTTTAGTGCCGATGTTGAGAGTTTGTTGGGGAAGGGACTAGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTGCCAAGGAGGTGGAGGAGCATGTGAAGGTGGAGGAGGAGGCGCTTGAATTGGATAAGAACCAGCAAGTACTCAAAGAAAATTATCAGCTGAAGAAGAAGATACTATTGTTGCAGTTGGATTACGAGGCTGTAATCAGTGCTTGGACGACCCAAAAATCACCATGGACAACTGGTGCTAAACCAAACTTGGGCACTCAGCAGTTTTGGCCTCATTTCATGGTATGACTACAATCTATGGCTTTAATTACCCTTTATGGTTGCTTTTTCTTACGTTGGTTTAATTTATTATTCATTTTCTTCCACGATGAACTTGGACAACATACATACATAGCTAGAGTATGGGGCATTTATTGGGGATTTTTTTATGACAATAGGTGATTTGAAAAATTTTATAGTGAGATTGTATTATTAATCCTAATCTATTAACAGGGAACATGTGGAGTCGAGTTTTGCCATCTTCGTGGGGAATTGGGTGAATTATCTGGGTGTCATTCAACAATGGGAGACGATGGAAGAGAAGCAAGAGTATTGAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAAAAAGTAAGGTATGAGGTTCGAAAGATGAATGCGGAGAAAAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGATCTTGCATAGCGACACCACCCACTGTTCCCTTGTTAAACAGAAAATAAGAGAGTATGAAAAAAGGGTGCATGGACCGTGCCACCTTTACATTTTTGTTTGAAATTAATGTCTTAGTTTCATCTCTGAATTCGAATGTATATACAAATTGAATAGCATAAAGTAATAAAAGGTTAAAATTACCATGTTTCGGTAATCAGAAATGTTACTTTATGGAACATGATATTTTGACCATTTTGACATGGATTTTTAATTTTTTTTAAAGCTATTAGAGCTGGAAAACGTAGCACTGAAAAATGAAAATTGCTGAATACACGTTTTCTTCCTTCCTTCTTTTGGTTGTTTTTCTAGCTTCTGTCGTTTTTCTTGTGTTTCTTATTTTTGCTTCTTCGCTTGCTTTATTGAAATTCATCATTATTTTGTTTCTCCATTGTTTTGTTGTGTTTGCAATTGAACATAAAAACCAAAAATCCCTTTGCGAGCAAAAATGATAAAGGAGACCTCCTTATTTTTTTTTGTCTACCATCATTCACTCGTAATAAAAAAAACTTTCTATGATTATTTGTTCTGTATATATTTAAATCCTTACTTTCTTAACTGATAAAAATATAGGTTAAACATTGTTTAAAATTTCATTTCAACAAAGAAAATTTGAACCATGAATGGTATGTGATTCTTTTCCATGACGTAGGTTACCACAGTTAAAAAAATAATTAAGTGCTTTCATTGAATCATTCCTTTGCAAAAAATTTAAACCAGACTAGGTATGATAGATAAGTCGAGTGCAACAAACAAATAAATGGGAGGAGCAACTTTTTGTACATGTTTAACAAAATTTCATCTGATGATGCTTTTAACCAATGGGATTCATATCTACCATTGATAACTCAATTTCTATACTCCCACATTCAAACTTATTACACTCCTTTAGCTTCTTTGTCTCATTTACTTTTTAGTTTTAGCCTAGATTTGTGAATCTTAGAAAGTTTTCACTAATAAAAAATCGTATTTTTAACTTGCATATTACGCTTCGATTTCAGCAAAACCGAAGCGTATCAAAACGTGGTGGCAGTTTCGTAATATTTAGAACACCATATGCCTCAGTTGTCAAGCAACCAATGTCTAAAGAGAATACTGCCTCGGTTGGAAGGGTTAACCGAGGCATAAACCCCACAGATATTATATTAATTAGACCTTTCACCTGGTACGTTTGTGGTGGCAACGATACTGCCTCGGTTGACAGGAAGGACCAAGGCATATAAGCCTTTATTGCCTTGGGGGCAAGAAGGACTGAGGCATATAAGCCTTTCTAATATTGGAAAGATGAAATTTTTCCCCAAATGCCTCATTCAAGCAAGGAAAACCTAGTGCAGCCGAGTGCCTTCTTTCTCGCGTCGTCTGCTCCGAGTGCGGCCTCGTCCCCGACCACTCCATCGACGAGACCTCCGACGGGCGACAACGACCCCAATCGTGTCGGCGGTCCCTTTAACATGAACGAACTCTAGTGCTTCCAACTGGAACAGAAAGTTGATCGGAGTCAGGTTCTTTGCCAAGGGTTGCGAGGCCATGTTAGGTCCTATTAACGAGACTAAGGAGTCTAGATCCCCTCGCGACGATGACAGTCACGACATCCACACAGCCAGCATAGTCGCAGGATTGATGGTTTTCGACGCAAGTCTTTTTGGTTCGGCACCCGGAACGACGCAAGGGATGGCGACGCATGCGAGAGTCGCTGCTTACAAGGTTTGCTGGAAGGGAGGGTGGAATGGCTGA