Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14841	LG3	53254788	53260269	PREDICTED: transcription factor BIM2 isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	transcription, DNA-templated, transcription, DNA-templated, transcription, DNA-templated, transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, identical protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein dimerization activity, identical protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding

SNP	Position	Effect	Amino acid change
T/C	53254920	3_prime_UTR_variant
C/T	53254927	3_prime_UTR_variant
T/C	53254942	3_prime_UTR_variant
C/T	53255045	3_prime_UTR_variant
T/C	53255054	3_prime_UTR_variant
G/C	53255253	intron_variant
G/C	53255396	intron_variant
G/A	53255551	intron_variant
A/T	53255608	intron_variant
A/G	53255762	intron_variant
T/A	53256156	missense_variant	p.Lys287Ile
A/T	53258114	intron_variant
G/T	53258979	intron_variant
C/G	53259045	intron_variant
G/A	53259219	intron_variant
G/C	53259585	upstream_gene_variant
A/C	53259586	upstream_gene_variant
G/A	53260110	5_prime_UTR_variant
G/A	53260259	5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14841.1

MRAGKGNQEEDEYDEEDFGSSKKQGTSSAPNTNKADGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWGQEPSKLMPWRNSHWRVQSFAGQPSAVKNGLGTVSPFPGKFDESSVSISPTMLSGTQNTIDPDQSRDIVNKTAERQPDLVSKGIPLPLPMHSNMSVPVRSDGVLAHPLQGTVSDAQSTECPTTSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANRGLSCGTSSPKNHDNPLSNNQTIAHFRDSGSGEDSDQTQKRMKTYK*

>Vu_14841.3

MRAGKGNQEEDEYDEEDFGSSKKQGTSSAPNTNKDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWGQEPSKLMPWRNSHWRVQSFAGQPSAVKNGLGTVSPFPGKFDESSVSISPTMLSGTQNTIDPDQSRDIVNKTAERQPDLVSKGIPLPLPMHSNMSVPVRSDGVLAHPLQGTVSDAQSTECPTTSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANRGLSCGTSSPKNHDNPLSNNQTIAHFRDSGSGEDSDQTQKRMKTYK*

>Vu_14841.2

CDS Sequence:
>Vu_14841.1

ATGAGAGCAGGGAAGGGGAATCAGGAAGAGGATGAGTACGACGAAGAAGACTTTGGTTCTTCCAAGAAACAAGGCACTTCTTCTGCCCCCAACACCAACAAAGCAGATGGAAAAGCCATTGATAAGGCCAGTGCGATAAGATCGAAACATTCTGTGACCGAGCAGCGGAGAAGGAGCAAGATAAACGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACGGCATCATTTTTGTTAGAGGTGATCGAGTATGTTCAGTACCTGCAGGAGAAGGTACAAAAGTATGAAGGTTCATATCCAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCTTCGGCTGTAAAGAATGGTTTGGGTACTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAGTGTTAGTATCTCTCCAACTATGCTTAGTGGCACACAGAACACGATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTCTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCTCAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCTAAGAATCATGACAACCCTCTTTCAAATAATCAAACAATTGCACATTTTAGAGATTCAGGAAGTGGAGAAGACTCGGATCAAACGCAAAAACGAATGAAAACATACAAGTGA

>Vu_14841.3

ATGAGAGCAGGGAAGGGGAATCAGGAAGAGGATGAGTACGACGAAGAAGACTTTGGTTCTTCCAAGAAACAAGGCACTTCTTCTGCCCCCAACACCAACAAAGATGGAAAAGCCATTGATAAGGCCAGTGCGATAAGATCGAAACATTCTGTGACCGAGCAGCGGAGAAGGAGCAAGATAAACGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACGGCATCATTTTTGTTAGAGGTGATCGAGTATGTTCAGTACCTGCAGGAGAAGGTACAAAAGTATGAAGGTTCATATCCAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCTTCGGCTGTAAAGAATGGTTTGGGTACTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAGTGTTAGTATCTCTCCAACTATGCTTAGTGGCACACAGAACACGATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTCTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCTCAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCTAAGAATCATGACAACCCTCTTTCAAATAATCAAACAATTGCACATTTTAGAGATTCAGGAAGTGGAGAAGACTCGGATCAAACGCAAAAACGAATGAAAACATACAAGTGA

>Vu_14841.2

Promoter Sequence:
>Vu_14841::LG3:53260269-53262269(-)

TTTTAACATATTTTTACATATTTAATAATATGTTAAAGAATATATTATATTTAAAGTATTATTTTTTATATAGTCTTTTTTTCTTTTATGATTTCTATTACTTAATCATTTAATAAAATTAAATTTAAAAAAACATATTTTACTTTTATTACTTAAAATAATATTATTTAAAAAGTAATATATGTTTATTGATAAAAAAATATAAAAATTTGTGATAAAAAATTTTGTCTTAAAAAATTTATTATTAATTTTTTATGTGAAGGGTTTCTTTTATTAATATTTTATTATTAAATAAAGTTTTCTTAGCAAAACGAAACCGTTGAACGGGAACTAGAGAAGAGAAAAGAGTAGATACTGTTTTCACAGTTAACTGAACCGAAATTCTTATAAGTTCAGTTTTTAAAAACTAAACCATAAAATAGTATACTGAACTTTTAGTAAAAGTGGATCGGTTTCTTTTAAGTATAATATAATATAATTAACTATAATACAATACAAATAAGTTATTTTTGCCCAATCCTACTGGTTGGAATAGTACATCAATTCTCCAATAACCAAGGTAATATCTTTCATTTCTTTTTATTTTTTAATTTTGACAAAACGAAAAACATTATTACATATGAGAGAATGGATGTAATATATGGATATTACATTCAAGCACAACCTATGTAAAACTATATCATGTCATCATATATTTTTTTATATATCGATTTCGTCATAACTGACCTAAAATATTTGTTATAATTTCTGTATTTCAAAATTAGTACTTTTCTCTTGTATATCTAGAACTTGTCTCTTTATATGTAACTTAATAATACTTACTACTCACACGCTTTGTTTCTTTAACAAATCTCTCGTCTTAATTCTTCGTAAGTTGAAATCGTTATTTTCATTACACTTTTCAATATTAGATGTAAAGCACAAATTCCAGTAACATATTAATTTGTTTCGCTCAAATGTCGAATAAACACAGAAAAAAACGAAAAAAGGGTAAAAAAAATGCTAATAACATGGAGATGAGATATCGTATTTCAATAAGAAATAGATGAATATAAAAGTATACAGCCATCAACCCAGAGTCACCAAGAAAAAAAAAACCTTATATAAGGGACAGGGATATGCATAAAAAAAAACTAAATAACACCTAACAAGTAAAATAATAGAGTATGAACACTAAATGGTCTAATGTTTCATGAAACTGTCCACTACTAAATATTTTCAAAGTAAAAAGCTACAATAAAAAATTGAGTAACATCACAAAGTTAACTTGTCATGAAATGATAGGATTTTAACTTTTAAAATTTAAATTATTATTTATGTTGTATTATTATTTTCTTTTCTAACTGATAATAAGTGTAACATTTATATACAAAATACAAACATATTTACTATCGCAATTTGTAATCAAATGGAAATATGATTTCAATAACATTAGCACAATCTAATTAAATTTACGACTAATACGTTTGTGTTTTTATTATGTTATTTCATTTTATTGAATTAAAATTTAATTGCTATGATAGTTTTAATGATTTTACATATTAATTTTAGAATTTATACTTTTTAATATATTTTTATCTATTTTGATGTTATTTTGTTTAAATCAAAATGTTATTTAAGAAATTTAAATTTAAAACTAAAGGAATTTAAAGTGATATAACAAACGGACTAGAATTAAAGAATATTGGTTTTGGAAGATATATAAAATGGAGATCTAGAAAAGGAGAAATAATTCGTTTTAAATGTTATTTAAAAAGTGATAAAATAAAATAATTTTACCTAAATTAAGAAATTACTAGGAATTAAAATGTGTACTTAAAATAAAGAAGTTTATTATACGTATAGTTATAGATTACAATAAAATAATAATAATAATTATTATAGTACATGTAGATGTCATTCCTTCTAAGTACCAACCAAATTATAGTTTATTTTTTATTTTTTATTTTTTTGTAATTATGATGATTCAGGTAAATACTCCCAAAATTTTGATGCGAAGA

Gene Sequence:

>Vu_14841(-)

GAAGACAGAACGGGAGAGGGTGGTTTGGTTTATTGTCAAATGAAGAAGGCTCACGAGACACGCATGGGCTCACCCACATCCTATCCGTCCTTCTCTCTCAGCTGCTGACTCACACATGTCCGTCGCCGGAAAAACCAGCTGCCACCTTAACGCCGCCGGCGAACGCCCTTCGCAGAATCTCAGCCGACGACGTTCCCTTTCTCAATTCCCCATCTGGGTATCCCTGTTTCCCCCAAAGTTCTCTTTTTTCTCTTGATTCAGAAGAACTGGTCAGTGATACCCTTTTTTTAGAACAATGAGAGCAGGGAAGGGGAATCAGGAAGAGGATGAGTACGACGAAGAAGACTTTGGTTCTTCCAAGAAACAAGGCACTTCTTCTGCCCCCAACACCAACAAAGGTACCCCTTTTAATTTTCGTGGACAAACATGATTGTAGTATTACATGTCATTCCTACGCTCTTGTTAGATCCAATTGTCGGGCGGTTCTTTGTTTCATTCGAGGTTGTGGCTGTTCTTGGTTTTCCCGAGTATTTTTTTTATGATATTGATTGTGTTAAATCTACTGATGTGTGCGTGCTTCTAAAAAACAGTCTTTTTGTGAGGTTTTCTGTATTTGGTGAATTTAATTAGTGGGGGGAAGCTTTTGTTTAGCTTCTGAAATGTAGAATTGGATTCATTTGCGATCTCAAGTTCATGTTTGAATGAAATTAGAGTTGTGGTTGTTATAGCAGATGGAAAAGCCATTGATAAGGCCAGTGCGATAAGATCGAAACATTCTGTGACCGAGCAGCGGAGAAGGAGCAAGATAAACGAGAGGTATGTCTTGTGTGCAACTCTTATTGATTAGTCAGTGCTCTAGTGCATTGGGTGTTCTACTGTAAGTTGCTAGAAAACAAACAACAACAAAAATATAGCTTATTATTGGTAATTTATGGTTTAAAATTGAATAATTGTTGATTGTCTGATGCACAACAACAACAAAAGGAAAATAACAAAGCCTTATTCCACTAGGTGAGATCGGTTAGATGAATCACATGATGCCACTTGACTCGGTTAAAGACCAAAGTTTCCGAGATATATGAGAAATATTTTATTTGATGGACGGTGAGCTAAAGGTTGATATGTTCATTAGAAGTTTTACATTGCTGTAGATCTTGTCATTTCATTGCTTTTGTTTATTTTCAGTTTTTTATCCTGCTGCAGAAGTGGTTGTAAGCATTTTGGGAGTATGTTATGATTTAGGCGCTTCTTCATATTTGGAATGAAATCCATGTTAATGATTGTGAATGGCTTCGTTTGTGTTGTAAAGAGCAATAACATCTTGAAATCTATATTTTAGAGCATTCATGTTAATGATTGGTAACCTTTTCCTCCAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACGGCATCATTTTTGTTAGAGGTAAAGTTTGTAAAGTGAGAAATGATTATGTTTTTATAATTTAAATTGGTTAAGAATATATCTAAAACCTGTCAATCTGTCGTGTACCTTTGTAGGTGATCGAGTATGTTCAGTACCTGCAGGAGAAGGTACAAAAGTATGAAGGTTCATATCCAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGGTAAATTAGAAAAACCATAATGTTTTAGGATCTTTTGCTATTGAGTACCAGGATGAAAAGAAAATTATCAATGAAACGTAAGGAATAGGGAAATATAGTGAAATGGAAAATCAACGTTTTCTTCCTTTTTACATACTTTTTCATTATATTCATCTCAACTTTGGTTTAAATTTCTACTTTTGGTGCATTATTTACAAATTGATAACAATTACTTGGTTTGTTATATAGTCAAAGTAGAGTAAATAAGTGAGGGACAATTCTCAGCTTATGAGCTAGCTTTTGGAGATGAGTTAAGTCCAAAGCAAAACTTTTAAGATCGTATGTGATGATTTTGTTGAACCTTTCAAGCCATCTGTTATCAAATTAGCCACTTGCTAACACACCTGCAAAACCTCAGTCACAAGATGTGCTCAAGTGAGAGCTGTGTGGTTGAGATCTTGTATAGTCTACTAATATAGCCAAAATAGCCGAAATAGTGTGTATTGGTGAAGGGGCCAACCCTCACATTGTGAGCTAAGTTTTTGGGTTTGGTTAGGTTCAAGCCCAAATTCTTTGAGTAGTCCTTTATCATAGAGGAGTTCTAGCAAACCAATTTCTAACACACTCCTTCGAACCAATTCTATTATTGGTTAAAATTTGTTTAAAACTACAAAAATAGGTGGAAGACTCATTAAATAAGAAGATACCTATGAAAATTTGTATTTTCCAATAAATTCCATTCTATAGTAATGTGTTCAAGATAACAGTTAGAAAATGTGCTACTAATATTTTTCTTTATCCTAGGAGCTTCCTCCATTATCATTAAGTTTGTTTGGATGACTTATTAACTTTGGTACATAACTGATAATATAGAATAATGTTGGCTTGTTTAGTTGAACTTCTCTATACGTACTTCTAGGAGAAAAGTGTAAGAAGGAACTAATGTTTCTCTAAACTGATTGGTGGAAGCTCTTTCGTATTAGCCTCTTCAAATTTAGATTTTTAACTTATAAATAAGTCAGCAAAAGCTTAGCTTTTTTGTTCGCATTTTCTTCTCTTAGAAGTGTTTATGGAGATATTTACACAAATAAGCCCTATGTATGTTTTAAGCTTGCTTACTTAGTGTAATAATACAGAGAAATAGTCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCTTCGGCTGTAAAGAATGGTTTGGGTACTGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAGTGTTAGTATCTCTCCAACTATGCTTAGTGGCACACAGAACACGATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTCTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCTCAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTGGGTAATTGCTTAAAATTTATTTCTGTTGTTATTGTATTTATTATTATTATTATTATTTCTGTAAAATTGTATGGTTTTGTTGATAAAGATGTTTGATACACAGATTTTTAGAAGAACTTTCTTTTTGTTATGGTTTTAAAAGTCCTTCATTGTTTGAGTTATGATCTAAGTCTTGTCCATATTACATTTTTGCAAAGACCTAGATAGTGTTATCATATTTGACAATTGCAAGGCTACATGTATGTTGATTTCACGTACCCAAGTTGTTAGATTTTATTCTCTATTTTACTTATGCATGATCATGGAGGAGAAAATCTGAGCTGTGGCTTTCTTTATCATGATTGAGGGGACTAGCCAAATAGATGGCTCTTTACTTTTATGAAAGAAAAGGGAAAAGGGAACGTTCCATGACCACTGGTGACCCCAAAGTAATTTGTCAATTTGCGTTTTTTCCCCCATTTTGACGAGTGCTAAATTTAGTTGATTGGTACTGTATTCTGTATATGTTCATTGTAGGGATCGTCAAAAGGTTGGATTGCTATTGCTCACATTACTCCCTTTTCCCCTAGCATGTCTTTAAATTATGGACGTTTGTGACATTCTGAAAACAACAGTTATTCAGGTTAAGAACTCCAATAAATGGCATCTGTAAAAGTTAATGTTTCTTGCAGTTTTGTAAAGATTTATAATGGTCTTGAGTATGAGTACCAGCTCAAGTCATTCATTCTAAATTTCTATTATCATTAAGTTTCAGTAGTACTATTTTGAACCCTCTAGATGCTTCTTCAAGCGTTTAGAATTAAAGTCTTTTGTCATCTTTTAATAACACCCAAGTTTCAAACCATTTGAAAAGCAGGTTGTTGAACAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCTAAGGTATATAATGGCATGTTGTCTTTATTTATCGATGTATCTTCTCGTTTTAGGATGTCTAAGAAGATTTTGTTACACTATCAATGTTGTTGGAAGGAACATGGCATGTTGTCTTTATTTATCGAGAAAACATTATGTCATGCATACTTATTATTTTTTATGAAATTATGGGATTCATTTGACAGATATTTTAATGAAGTCTGAATTTTATATTCTAGAATTACAAGCATTACGACAATTACAATTATGATCTTAGTATCTTCAATTCATAACTAAAATTAGTTTTGAGACTTTTATAAGTTTGAAGATCTCATATTGGAAAATACTTATGTCTCATGTGTTTAGGCTGTTTCTACTATATTGATTTAGGGAGAAATTAGGTGAATCTTACTTGTGGCTTAAGGTAGTGATAAAATTTGTTTCTGAACTTTAATATTTGACTATCATTATTGTCACATATAGTGCCCTCTCCCGTTTATACCTGTAAAGATACAAACAAACTTTTTGTTTTTATAAAAATCTCTCAAACATAAACACTAGATTATTTTCATTTGACGTAAGCATCACTTTTTTAATCTGTAACAAATGGACCCATAATCCTTAGAGGCCATTGTAATCATATGAATTGAAGATATAACTCAAATTTTAACTTAGCCATGAAGATACATTGTTTTATCAATATGGCCTGCCGATTTATGATAAACATTTTATTTCAATAACTACTCAATGTTATGAGTACTAATATTTGAAACTAAAACTAGGTGGGTTCTTTGATAATATGCTTCTCAATTATTTATTTGGTGAAAGTTTGATTAGTGGTATCCTCCAAAGCCCAAAATATGGAAAATTTCAAGGACTTGGTCATGTGTATGGCTGATCCTTTCTTATTTGTGTTATGCAGAATCATGACAACCCTCTTTCAAATAATCAAACAATTGCACATTTTAGAGATTCAGGAAGTGGAGAAGACTCGGATCAAACGCAAAAACGAATGAAAACATACAAGTGATGTAGCATTTTCACGAGACATCCAGATTTCTTGCTTGTTCCTGGCATAACACATTCCCTGTGGCTACTGTACATCCTTCCCCATATGTTTGACTTTTTAATGGTTATTTCAGAACCATATAAAACATGAAAACGACAATTTGTGGAGATATTGAAGCTTCTACTATAGTAGGCCATGCCGTATATTATAGCTGTATGATACATATTATATCATGGCAATTATTATTGAGCGTTTGTTTGGAAATTTTATGATATATATATACACACGTTTATTTTGAATGCATTTGGAGAGCGCTTGAAAAAAGAGAGGTTCTTTTATG