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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14766 LG3 52224439 52226630 PREDICTED: dentin sialophosphoprotein-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 52224959 missense_variant p.Thr409Ile
T/A 52224960 missense_variant p.Thr409Ser
A/G 52225029 missense_variant p.Tyr386His
C/A 52225030 missense_variant p.Lys385Asn
T/G 52225031 missense_variant p.Lys385Thr
T/A 52225119 stop_gained p.Lys356*
T/A 52225421 missense_variant p.Lys255Met
C/A 52225909 missense_variant p.Arg92Ser
T/A 52225929 missense_variant p.Asn86Tyr
G/T 52226337 5_prime_UTR_variant
A/G 52226525 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14766.1
MSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMMSENSALGNAERSNATNGMFKLNGRGKRKRDLGSEENGGGGGGGATYGLRENPKKTTRFVHSNSSLQLEKFCKECGKGFLSLKALCGHMACHSEKDKGGNRFESSSSGFAEKQKLAMDSQSDTETSTPRRSKRKRFKTLSNSNNQAQSSVSEVEQGQEEVARCLMMLSKDSSYKGRFSLFTESSDNNSVVLEVKSPSPDTKVTMMNSDGKNFVSGAYEEKKLEQSKEFKYAEVGYDSDNSDSGYFRYGPKEVDSTDSNNGNFKNEVQSSKVGCFSGFEDYDVESRKVPSRSVEFKKFVVENWENDRQDGGAARKFDSKKSKKPNYESLGQNLVRVSSRKMGNGSGNDKVNKYECLTSERDNGYDDSAYESDENSTDSDSYPAPKAYSKRNLSGQKGKKKLKSKKSKAHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPGAAAVPCLIDLNLPAPVDE*


CDS Sequence:
>Vu_14766.1
ATGTCGTATCAATCAATGGAGGAGAGAAAGTTTGTTTGCAAGTATTGCAGCAAGAGGTTCCCGTGTGGGAAGTCTCTCGGTGGCCACATCAGAACTCACATGATGAGTGAGAATTCAGCTTTAGGTAATGCAGAGAGGAGCAATGCTACTAATGGTATGTTCAAGTTGAATGGCCGGGGAAAGAGGAAGAGAGATTTGGGGTCTGAAGAAAACGGTGGTGGTGGCGGTGGTGGGGCTACTTATGGTCTTAGAGAGAACCCCAAGAAGACCACGAGGTTTGTACATTCCAATTCCAGTTTGCAGCTTGAAAAGTTCTGCAAAGAATGTGGGAAGGGATTTCTGTCATTGAAGGCTCTTTGTGGCCACATGGCTTGCCACTCTGAAAAGGACAAGGGAGGCAATAGGTTTGAGAGCAGTTCTAGTGGGTTTGCTGAGAAGCAGAAATTGGCTATGGACAGTCAATCTGACACCGAAACTTCTACGCCAAGGAGGTCCAAGAGAAAGAGGTTCAAGACCCTTAGCAATAGCAACAACCAAGCTCAATCTTCTGTTTCGGAGGTTGAGCAGGGTCAGGAAGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAGGATTCTAGCTATAAGGGTCGTTTTTCTTTGTTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTAGAGGTTAAGTCACCTTCACCGGACACTAAGGTTACTATGATGAATAGTGATGGTAAGAACTTTGTGTCTGGTGCTTATGAGGAGAAGAAGTTGGAGCAGTCCAAGGAGTTTAAGTATGCTGAAGTTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTTAGATATGGTCCTAAGGAGGTTGACTCCACTGATTCAAATAATGGGAATTTCAAGAATGAGGTTCAGTCTTCGAAAGTGGGGTGCTTTTCTGGGTTTGAGGATTATGATGTTGAGTCAAGGAAAGTGCCAAGCAGGAGCGTTGAATTCAAGAAATTTGTTGTGGAGAATTGGGAGAATGATAGACAAGATGGTGGAGCTGCAAGGAAATTTGATTCAAAGAAAAGTAAGAAACCCAACTATGAGTCTCTTGGGCAGAATTTAGTAAGGGTTTCTAGCAGGAAGATGGGGAATGGTTCTGGCAATGATAAGGTGAACAAGTACGAGTGCTTAACCAGTGAAAGAGACAATGGTTATGATGATTCTGCTTATGAGAGTGATGAAAACAGCACAGACAGTGATTCTTATCCAGCTCCGAAGGCTTACAGCAAGAGGAACCTCAGTGGCCAAAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAATGCCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAGAGATCCCATTTTATTGGAGGTTCTGAAGAGAACACCCTAGTGATAAGACCAGGAGCTGCTGCTGTTCCTTGCCTCATTGATCTCAACTTACCAGCACCAGTTGATGAATAG


Promoter Sequence:
>Vu_14766::LG3:52226630-52228630(-)
TATAAGATAAATTTTAATCAATTTATCATCATAAGAAAAATCATGAATAGTACATAAGAATTAAAGTGTGTTCTGTTCTACAATTTTACAATATTAGAACGAAAAGAAAAATTATGAAAGGTGAAGAAGAGAAAAGAAACTAAAAGAGATTCATGATAAGAAGAAGATAAATCTCAGAAAGTATAGATTTTTATTTTAGTTATAGAAGTTATTTTTGTTTCTTCAGTAAAAGTTTTTAGTTCTTAAAACTTGTATTTAAACTTATTTACTCTATTTTTTTTAACTTTTAAGGAAAAGAAAATTGAGTGAAACAATGCGAGAATGTTGCTAAACTCTAATATATTAATTACATTGACTAACCAAATCAACCTTTTAGAGGATGTAAGTGTAGAAAATGAAGCACCATTAGTGATGCTTTGCACCAAAAATAGGTAGAAGAATAAAAGTAGCCTCTTGTAACAAGCAAATTACATCTCTGCAACAGTGTTTGACTTAATCTAAGAGAAGTTATAGAAATTTGTGGTGCCAAGTGCAGTCAAAAATTTAGCATATTCTAATTCAACATTGTTAAGAGTGTTAGGATTTTTCTAGTTTAACACTATTATTGTTTTTTTTACTTCATATATTAGAATATATAATATTGAGGGTTTTTCTTATATGTTTTTAACCACACATAATTTATACCAATATAATAATTAAAAAAAATAAGTAACTCAATTTTTTTTGTTATCTTATAACACACATGCAAACATGAAAAATGTAAGTGATGTGTATCTATATATAATTTTTTTTCTTTCTAAGAACTATGTCTTGTACTCATAGTCACAATGCACATATGAATTGAAACTGTGGGCAAAAACAGGGGAAAAGATTCCAATCCCATGAATTCTAGTATTATTTTGTACCCCTTAATTACCATTTAGCATTTATATAAAGATCAGCATATATTTACAAATTAAGATTTTTTAAAGTTTTATCACTATTACATACATAGAAATATTGGATAATATTGGTAGCAACACAACTAAAAGGAATATAATTATTATAAAAGAAAGAGTATATTCTCAATTGAGTAAGTCATAAATAGACCTCACCAGAATGGGTATAATCAATCCACTAAAAGATGTTATCCATGATTTATAAATATGTCAGAATTCAAATTCAGCGTCTCTTCCAAATATTTTATTAACTACTGATATAATTCTCTATTTAACACTTACATAACAAAATTGCTCATTTTCTTAGAAGATACCATTGTTGTTTCAAAAGTTAAATTGAAATTTTGATAAGATGTAAGACAATTTTAAAGAAATATAATACACATGTAATAAATAAATTGCCGGTAAGGTAAAAATATAAATCTTGTAACTAAATAATAATATAAAAAGCAAAAACACCATTCAAATTTTCTGAGAATTTGTTTTGAACTGACACCATGCATCCCAAGTAGAACTTTTATATAGATCAATACTTTTTTAATTATTTAATTTCTCATTAAGTGAAATAATAGTGGATATAAGGTTATAAAAAAAATTAAGAGAAATAAAGGTAAAAACATATTGTTAGAATAAATAATATGCTATAAATTAAATTGATTATATGATTTTTAGAAAAAGAAGAAGTGAAAGAGGTGCTTTGCTTAAAAATCCAAAAGTAGGAGTTTCTGACATTGAACTCGTGTGAGCTGAGAAACAAGATGATCAAAGGTGTAGTTTGGATGTTTCAATTTTTTGATTTGCCATACATCTTCCAATTTTGACTGTGCAAAGAACCACCGAACTGTGCTCAACAGAGTACACGTGTTTCAATATTTTGTTTTCTCTTTAAAACTACCTTTTTACTTTATTTTATTTTTATTCCATGCATGGAATTCTCCTCCGACTTCAACACCACCAAAATGAGAGAACTACCAAAAAAAGAGATATAATATATATATATATATATATATATATATATAAATATAAATATATAGAGAGAGAAAAAAGAGAAGAGAGTGATGG


Gene Sequence:
>Vu_14766(-)
TTAGTTCTAGCTCTTCTTCTTTGGTGCCTATTGAGTAGTAGCAGCAACAACAACAAACAACAACAACCCATTTTTCAAAATTGGATTTTTTCCATGGCACCTCCATTGATTTTGTTTGCTTAGGAGAAACAAAATTTAGGGTGTCTGGTTCTGCCTTTTCTCGGGTCTAATCTCTGTACTTATGGATACGTCGCATCGGAACGCTTTGATTCTCTTTTGATCATCATCTGGTCAGAAAAGAAGAAGCTTTGTGATCTGTTTCTCTGAACTTGATCTGAATTTGTGGTTTACAGCCCCTTCCTCCTGTGTGTTCACATGATCACGGAATGTGCATATGCATATAGTCCTTGCGAATTTTGAGGTAAGTGTTAAAAAGCTTGTTGATCTTGTTTTGTTTTGCTTGGTGGATACAATAATATTTGGATTAGATTCGTTCGTTATTCATCATGTCGTATCAATCAATGGAGGAGAGAAAGTTTGTTTGCAAGTATTGCAGCAAGAGGTTCCCGTGTGGGAAGTCTCTCGGTGGCCACATCAGAACTCACATGATGAGTGAGAATTCAGCTTTAGGTAATGCAGAGAGGAGCAATGCTACTAATGGTATGTTCAAGTTGAATGGCCGGGGAAAGAGGAAGAGAGATTTGGGGTCTGAAGAAAACGGTGGTGGTGGCGGTGGTGGGGCTACTTATGGTCTTAGAGAGAACCCCAAGAAGACCACGAGGTTTGTACATTCCAATTCCAGTTTGCAGCTTGAAAAGTTCTGCAAAGAATGTGGGAAGGGATTTCTGTCATTGAAGGCTCTTTGTGGCCACATGGCTTGCCACTCTGAAAAGGACAAGGGAGGCAATAGGTTTGAGAGCAGTTCTAGTGGGTTTGCTGAGAAGCAGAAATTGGCTATGGACAGTCAATCTGACACCGAAACTTCTACGCCAAGGAGGTCCAAGAGAAAGAGGTTCAAGACCCTTAGCAATAGCAACAACCAAGCTCAATCTTCTGTTTCGGAGGTTGAGCAGGGTCAGGAAGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAGGATTCTAGCTATAAGGGTCGTTTTTCTTTGTTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTAGAGGTTAAGTCACCTTCACCGGACACTAAGGTTACTATGATGAATAGTGATGGTAAGAACTTTGTGTCTGGTGCTTATGAGGAGAAGAAGTTGGAGCAGTCCAAGGAGTTTAAGTATGCTGAAGTTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTTAGATATGGTCCTAAGGAGGTTGACTCCACTGATTCAAATAATGGGAATTTCAAGAATGAGGTTCAGTCTTCGAAAGTGGGGTGCTTTTCTGGGTTTGAGGATTATGATGTTGAGTCAAGGAAAGTGCCAAGCAGGAGCGTTGAATTCAAGAAATTTGTTGTGGAGAATTGGGAGAATGATAGACAAGATGGTGGAGCTGCAAGGAAATTTGATTCAAAGAAAAGTAAGAAACCCAACTATGAGTCTCTTGGGCAGAATTTAGTAAGGGTTTCTAGCAGGAAGATGGGGAATGGTTCTGGCAATGATAAGGTGAACAAGTACGAGTGCTTAACCAGTGAAAGAGACAATGGTTATGATGATTCTGCTTATGAGAGTGATGAAAACAGCACAGACAGTGATTCTTATCCAGCTCCGAAGGCTTACAGCAAGAGGAACCTCAGTGGCCAAAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAATGCCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAGAGATCCCATTTTATTGGAGGTTCTGAAGAGAACACCCTAGTGATAAGACCAGGAGCTGCTGCTGTTCCTTGCCTCATTGATCTCAACTTACCAGCACCAGTTGATGAATAGGGAGAAACGTGGCATGTCATTCTGGGTTTTGCAGTATTTTGAAGCATCTGTTGTTGAGGTAGCTGAATGTTTGGAATTCTAAAAGCATTGTGTCTTTATCCCATATGATGAAAGCAATGACAATGTACAAACAAGTGGGTAGCTGATTTTTGTTCCTAAGGCCTTAGATCCATTGTTTTGGTTTAGGGTAGTCTTTCTTTTCATGTTTATAGAGCATGAGAACTTACTACTTTCTCAATTGATATTTCTTTG

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